RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 PRRC2BQ5JSZ5 2229 aaKnown RBP22.13■■□□□ 1.13
PTCD3-220ENST00000627371 GOLGA6L22H0YM25 854 aa22.13■■□□□ 1.13
PTCD3-220ENST00000627371 MEFVO15553 781 aaPredicted RBP22.13■■□□□ 1.13
PTCD3-220ENST00000627371 ITGB1P05556 798 aa22.13■■□□□ 1.13
PTCD3-220ENST00000627371 THP07101 528 aa22.13■■□□□ 1.13
PTCD3-220ENST00000627371 GALTP07902 379 aa22.13■■□□□ 1.13
PTCD3-220ENST00000627371 CXCL8P10145 99 aa22.13■■□□□ 1.13
PTCD3-220ENST00000627371 ALDH7A1P49419 539 aaKnown RBP22.13■■□□□ 1.13
PTCD3-220ENST00000627371 ADGRE1Q14246 886 aa22.13■■□□□ 1.13
PTCD3-220ENST00000627371 SLC10A6Q3KNW5 377 aa22.13■■□□□ 1.13
PTCD3-220ENST00000627371 SLC39A11Q8N1S5 342 aa22.13■■□□□ 1.13
PTCD3-220ENST00000627371 SMARCE1Q969G3 411 aa22.13■■□□□ 1.13
PTCD3-220ENST00000627371 CPSF3Q9UKF6 684 aaKnown RBP22.13■■□□□ 1.13
PTCD3-220ENST00000627371 PCDHA5Q9Y5H7 936 aa22.13■■□□□ 1.13
PTCD3-220ENST00000627371 TGFB1I1O43294 461 aa22.12■■□□□ 1.13
PTCD3-220ENST00000627371 FGF18O76093 207 aa22.12■■□□□ 1.13
PTCD3-220ENST00000627371 KCNE1P15382 129 aa22.12■■□□□ 1.13
PTCD3-220ENST00000627371 SLC11A1P49279 550 aa22.12■■□□□ 1.13
PTCD3-220ENST00000627371 SNRPFP62306 86 aaKnown RBP22.12■■□□□ 1.13
PTCD3-220ENST00000627371 NAB2Q15742 525 aa22.12■■□□□ 1.13
PTCD3-220ENST00000627371 KNOP1Q1ED39 458 aaKnown RBP22.12■■□□□ 1.13
PTCD3-220ENST00000627371 GLRA4Q5JXX5 417 aa22.12■■□□□ 1.13
PTCD3-220ENST00000627371 ARMCX5Q6P1M9 558 aa22.12■■□□□ 1.13
PTCD3-220ENST00000627371 ERCC4Q92889 916 aaPredicted RBP22.12■■□□□ 1.13
PTCD3-220ENST00000627371 PPP1R10Q96QC0 940 aaKnown RBP22.12■■□□□ 1.13
PTCD3-220ENST00000627371 CBWD1Q9BRT8 395 aa22.12■■□□□ 1.13
PTCD3-220ENST00000627371 RPF1Q9H9Y2 349 aaKnown RBP22.12■■□□□ 1.13
PTCD3-220ENST00000627371 PLEKHA5Q9HAU0 1116 aa22.12■■□□□ 1.13
PTCD3-220ENST00000627371 SPG21Q9NZD8 308 aa22.12■■□□□ 1.13
PTCD3-220ENST00000627371 SMIM28A0A1B0GU29 152 aa22.11■■□□□ 1.13
PTCD3-220ENST00000627371 TTC26A0AVF1 554 aa22.11■■□□□ 1.13
PTCD3-220ENST00000627371 KIAA0391O15091 583 aaKnown RBP22.11■■□□□ 1.13
PTCD3-220ENST00000627371 GRM6O15303 877 aa22.11■■□□□ 1.13
PTCD3-220ENST00000627371 FOSL2P15408 326 aa22.11■■□□□ 1.13
PTCD3-220ENST00000627371 POU3F3P20264 500 aaPredicted RBP22.11■■□□□ 1.13
PTCD3-220ENST00000627371 ACOT2P49753 483 aa22.11■■□□□ 1.13
PTCD3-220ENST00000627371 POU5F1Q01860 360 aaKnown RBP22.11■■□□□ 1.13
PTCD3-220ENST00000627371 PLCB3Q01970 1234 aa22.11■■□□□ 1.13
PTCD3-220ENST00000627371 TUSC3Q13454 348 aa22.11■■□□□ 1.13
PTCD3-220ENST00000627371 ENOX2Q16206 610 aaKnown RBP22.11■■□□□ 1.13
PTCD3-220ENST00000627371 HS2ST1Q7LGA3 356 aa22.11■■□□□ 1.13
PTCD3-220ENST00000627371 LMAN2LQ9H0V9 348 aa22.11■■□□□ 1.13
PTCD3-220ENST00000627371 ALG13Q9NP73 1137 aaKnown RBP22.11■■□□□ 1.13
PTCD3-220ENST00000627371 AGPAT3Q9NRZ7 376 aa22.11■■□□□ 1.13
PTCD3-220ENST00000627371 CGNQ9P2M7 1197 aaKnown RBP22.11■■□□□ 1.13
PTCD3-220ENST00000627371 MYO7AQ13402 2215 aa22.11■■□□□ 1.13
PTCD3-220ENST00000627371 NT5C1B-RDH14C9J2C7 533 aa22.1■■□□□ 1.13
PTCD3-220ENST00000627371 KIF20AO95235 890 aa22.1■■□□□ 1.13
PTCD3-220ENST00000627371 LDHAP00338 332 aaKnown RBP22.1■■□□□ 1.13
PTCD3-220ENST00000627371 ALDH2P05091 517 aa22.1■■□□□ 1.13
PTCD3-220ENST00000627371 ADRB2P07550 413 aa22.1■■□□□ 1.13
PTCD3-220ENST00000627371 UBE3AQ05086 875 aa22.1■■□□□ 1.13
PTCD3-220ENST00000627371 PPP2R3AQ06190 1150 aa22.1■■□□□ 1.13
PTCD3-220ENST00000627371 CRELD2Q6UXH1 353 aaPredicted RBP22.1■■□□□ 1.13
PTCD3-220ENST00000627371 TMEM173Q86WV6 379 aaPredicted RBP22.1■■□□□ 1.13
PTCD3-220ENST00000627371 SPPL3Q8TCT6 385 aa22.1■■□□□ 1.13
PTCD3-220ENST00000627371 SAAL1Q96ER3 474 aa22.1■■□□□ 1.13
PTCD3-220ENST00000627371 ZMAT2Q96NC0 199 aaKnown RBP22.1■■□□□ 1.13
PTCD3-220ENST00000627371 LMCD1Q9NZU5 365 aa22.1■■□□□ 1.13
PTCD3-220ENST00000627371 FAN1Q9Y2M0 1017 aa22.1■■□□□ 1.13
PTCD3-220ENST00000627371 EYSQ5T1H1 3165 aa22.1■■□□□ 1.13
PTCD3-220ENST00000627371 NRP1O14786 923 aa22.09■■□□□ 1.13
PTCD3-220ENST00000627371 EXTL3O43909 919 aa22.09■■□□□ 1.13
PTCD3-220ENST00000627371 IGFBP4P22692 258 aa22.09■■□□□ 1.13
PTCD3-220ENST00000627371 OR1G1P47890 313 aa22.09■■□□□ 1.13
PTCD3-220ENST00000627371 PTPROQ16827 1216 aa22.09■■□□□ 1.13
PTCD3-220ENST00000627371 CD302Q8IX05 232 aa22.09■■□□□ 1.13
PTCD3-220ENST00000627371 C12orf56Q8IXR9 622 aa22.09■■□□□ 1.13
PTCD3-220ENST00000627371 GUF1Q8N442 669 aaKnown RBP22.09■■□□□ 1.13
PTCD3-220ENST00000627371 GOLGA5Q8TBA6 731 aa22.09■■□□□ 1.13
PTCD3-220ENST00000627371 POF1BQ8WVV4 589 aa22.09■■□□□ 1.13
PTCD3-220ENST00000627371 TMEM169Q96HH4 297 aa22.09■■□□□ 1.13
PTCD3-220ENST00000627371 IGSF21Q96ID5 467 aa22.09■■□□□ 1.13
PTCD3-220ENST00000627371 FAM213AQ9BRX8 229 aa22.09■■□□□ 1.13
PTCD3-220ENST00000627371 GTPBP4Q9BZE4 634 aaKnown RBP22.09■■□□□ 1.13
PTCD3-220ENST00000627371 KCTD10Q9H3F6 313 aa22.09■■□□□ 1.13
PTCD3-220ENST00000627371 PCIF1Q9H4Z3 704 aa22.09■■□□□ 1.13
PTCD3-220ENST00000627371 SLC38A7Q9NVC3 462 aa22.09■■□□□ 1.13
PTCD3-220ENST00000627371 LZTS1Q9Y250 596 aa22.09■■□□□ 1.13
PTCD3-220ENST00000627371 MTCH2Q9Y6C9 303 aa22.09■■□□□ 1.13
PTCD3-220ENST00000627371 LACTBL1A8MY62 500 aa22.08■■□□□ 1.13
PTCD3-220ENST00000627371 KRT17Q04695 432 aa22.08■■□□□ 1.13
PTCD3-220ENST00000627371 ZNF658Q5TYW1 1059 aaPredicted RBP22.08■■□□□ 1.13
PTCD3-220ENST00000627371 GPD1LQ8N335 351 aa22.08■■□□□ 1.13
PTCD3-220ENST00000627371 ZSWIM2Q8NEG5 633 aa22.08■■□□□ 1.13
PTCD3-220ENST00000627371 BCL7CQ8WUZ0 217 aaPredicted RBP22.08■■□□□ 1.13
PTCD3-220ENST00000627371 MRPL38Q96DV4 380 aaKnown RBP22.08■■□□□ 1.13
PTCD3-220ENST00000627371 TSPAN18Q96SJ8 248 aa22.08■■□□□ 1.13
PTCD3-220ENST00000627371 MARCH5Q9NX47 278 aa22.08■■□□□ 1.13
PTCD3-220ENST00000627371 HSPBP1Q9NZL4 362 aa22.08■■□□□ 1.13
PTCD3-220ENST00000627371 STXBP5LQ9Y2K9 1186 aa22.08■■□□□ 1.13
PTCD3-220ENST00000627371 PRG3Q9Y2Y8 225 aaPredicted RBP22.08■■□□□ 1.13
PTCD3-220ENST00000627371 CASTOR2A6NHX0 329 aa22.07■■□□□ 1.12
PTCD3-220ENST00000627371 CLIC2O15247 247 aa22.07■■□□□ 1.12
PTCD3-220ENST00000627371 DNAJB1P25685 340 aa22.07■■□□□ 1.12
PTCD3-220ENST00000627371 CAMK1Q14012 370 aa22.07■■□□□ 1.12
PTCD3-220ENST00000627371 COBLL1Q53SF7 1204 aa22.07■■□□□ 1.12
PTCD3-220ENST00000627371 BRSK2Q8IWQ3 736 aa22.07■■□□□ 1.12
PTCD3-220ENST00000627371 SMYD4Q8IYR2 804 aaPredicted RBP22.07■■□□□ 1.12
PTCD3-220ENST00000627371 CLSTN2Q9H4D0 955 aa22.07■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms