RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 CELF4Q9BZC1 486 aaKnown RBP7.05□□□□□ -1.28
VPS29-210ENST00000552130 XYLT2Q9H1B5 865 aa7.05□□□□□ -1.28
VPS29-210ENST00000552130 NOL6Q9H6R4 1146 aaKnown RBP7.05□□□□□ -1.28
VPS29-210ENST00000552130 HAUS2Q9NVX0 235 aa7.05□□□□□ -1.28
VPS29-210ENST00000552130 CEP83Q9Y592 693 aa7.05□□□□□ -1.28
VPS29-210ENST00000552130 KCTD3Q9Y597 815 aa7.05□□□□□ -1.28
VPS29-210ENST00000552130 GPR45Q9Y5Y3 372 aa7.05□□□□□ -1.28
VPS29-210ENST00000552130 INO80B-WBP1J3KQ70 363 aa7.04□□□□□ -1.28
VPS29-210ENST00000552130 ACKR2O00590 384 aa7.04□□□□□ -1.28
VPS29-210ENST00000552130 NDUFS2O75306 463 aa7.04□□□□□ -1.28
VPS29-210ENST00000552130 SYN1P17600 705 aa7.04□□□□□ -1.28
VPS29-210ENST00000552130 HOXC12P31275 282 aa7.04□□□□□ -1.28
VPS29-210ENST00000552130 CASQ1P31415 396 aa7.04□□□□□ -1.28
VPS29-210ENST00000552130 TLE2Q04725 743 aa7.04□□□□□ -1.28
VPS29-210ENST00000552130 CUL4AQ13619 759 aa7.04□□□□□ -1.28
VPS29-210ENST00000552130 NFIXQ14938 502 aa7.04□□□□□ -1.28
VPS29-210ENST00000552130 SLMAPQ14BN4 828 aa7.04□□□□□ -1.28
VPS29-210ENST00000552130 PPP2R5BQ15173 497 aa7.04□□□□□ -1.28
VPS29-210ENST00000552130 PRSS53Q2L4Q9 553 aa7.04□□□□□ -1.28
VPS29-210ENST00000552130 ARL13BQ3SXY8 428 aa7.04□□□□□ -1.28
VPS29-210ENST00000552130 MAEAQ7L5Y9 396 aa7.04□□□□□ -1.28
VPS29-210ENST00000552130 PHACTR4Q8IZ21 702 aa7.04□□□□□ -1.28
VPS29-210ENST00000552130 RTKN2Q8IZC4 609 aa7.04□□□□□ -1.28
VPS29-210ENST00000552130 ADCY4Q8NFM4 1077 aa7.04□□□□□ -1.28
VPS29-210ENST00000552130 LILRB1Q8NHL6 650 aaPredicted RBP7.04□□□□□ -1.28
VPS29-210ENST00000552130 LINC01599Q8WXQ3 324 aa7.04□□□□□ -1.28
VPS29-210ENST00000552130 RFFLQ8WZ73 363 aa7.04□□□□□ -1.28
VPS29-210ENST00000552130 APIPQ96GX9 242 aa7.04□□□□□ -1.28
VPS29-210ENST00000552130 ORAI2Q96SN7 254 aa7.04□□□□□ -1.28
VPS29-210ENST00000552130 PYM1Q9BRP8 204 aaKnown RBP7.04□□□□□ -1.28
VPS29-210ENST00000552130 GPATCH1Q9BRR8 931 aaKnown RBP7.04□□□□□ -1.28
VPS29-210ENST00000552130 SGPP1Q9BX95 441 aa7.04□□□□□ -1.28
VPS29-210ENST00000552130 ARHGAP39Q9C0H5 1083 aa7.04□□□□□ -1.28
VPS29-210ENST00000552130 BLOC1S6Q9UL45 172 aa7.04□□□□□ -1.28
VPS29-210ENST00000552130 SRPK3Q9UPE1 567 aa7.04□□□□□ -1.28
VPS29-210ENST00000552130 ZNF451Q9Y4E5 1061 aa7.04□□□□□ -1.28
VPS29-210ENST00000552130 ADAMTS20P59510 1910 aa7.03□□□□□ -1.28
VPS29-210ENST00000552130 GOLGA6L3A6NEY3 463 aa7.03□□□□□ -1.28
VPS29-210ENST00000552130 NOTOA8MTQ0 251 aa7.03□□□□□ -1.28
VPS29-210ENST00000552130 RGS13O14921 159 aa7.03□□□□□ -1.28
VPS29-210ENST00000552130 CLEC3AO75596 197 aa7.03□□□□□ -1.28
VPS29-210ENST00000552130 SRGAP2CP0DJJ0 459 aa7.03□□□□□ -1.28
VPS29-210ENST00000552130 HARSP12081 509 aaKnown RBP7.03□□□□□ -1.28
VPS29-210ENST00000552130 HNRNPLP14866 589 aaKnown RBP eCLIP7.03□□□□□ -1.28
VPS29-210ENST00000552130 MC4RP32245 332 aa7.03□□□□□ -1.28
VPS29-210ENST00000552130 LSP1P33241 339 aa7.03□□□□□ -1.28
VPS29-210ENST00000552130 PHC1P78364 1004 aa7.03□□□□□ -1.28
VPS29-210ENST00000552130 TRPC3Q13507 836 aa7.03□□□□□ -1.28
VPS29-210ENST00000552130 SSPNQ14714 243 aa7.03□□□□□ -1.28
VPS29-210ENST00000552130 SMAD2Q15796 467 aaKnown RBP7.03□□□□□ -1.28
VPS29-210ENST00000552130 GALNT17Q6IS24 598 aa7.03□□□□□ -1.28
VPS29-210ENST00000552130 TATDN1Q6P1N9 297 aa7.03□□□□□ -1.28
VPS29-210ENST00000552130 ABRAXAS1Q6UWZ7 409 aa7.03□□□□□ -1.28
VPS29-210ENST00000552130 COL23A1Q86Y22 540 aaPredicted RBP7.03□□□□□ -1.28
VPS29-210ENST00000552130 SPPL2CQ8IUH8 684 aa7.03□□□□□ -1.28
VPS29-210ENST00000552130 EPHX4Q8IUS5 362 aa7.03□□□□□ -1.28
VPS29-210ENST00000552130 ARHGEF39Q8N4T4 335 aa7.03□□□□□ -1.28
VPS29-210ENST00000552130 TDRD7Q8NHU6 1098 aaKnown RBP7.03□□□□□ -1.28
VPS29-210ENST00000552130 CGRRF1Q99675 332 aa7.03□□□□□ -1.28
VPS29-210ENST00000552130 G6PC3Q9BUM1 346 aa7.03□□□□□ -1.28
VPS29-210ENST00000552130 UNKQ9C0B0 810 aaKnown RBP7.03□□□□□ -1.28
VPS29-210ENST00000552130 MS4A5Q9H3V2 200 aa7.03□□□□□ -1.28
VPS29-210ENST00000552130 PREBQ9HCU5 417 aa7.03□□□□□ -1.28
VPS29-210ENST00000552130 ST6GALNAC1Q9NSC7 600 aaPredicted RBP7.03□□□□□ -1.28
VPS29-210ENST00000552130 CGGBP1Q9UFW8 167 aaPredicted RBP7.03□□□□□ -1.28
VPS29-210ENST00000552130 TUBD1Q9UJT1 453 aa7.03□□□□□ -1.28
VPS29-210ENST00000552130 KCNH3Q9ULD8 1083 aa7.03□□□□□ -1.28
VPS29-210ENST00000552130 KNSTRNQ9Y448 316 aa7.03□□□□□ -1.28
VPS29-210ENST00000552130 ZNF711Q9Y462 761 aa7.03□□□□□ -1.28
VPS29-210ENST00000552130 PI4KAP2A4QPH2 592 aa7.02□□□□□ -1.29
VPS29-210ENST00000552130 LGALS16A8MUM7 142 aa7.02□□□□□ -1.29
VPS29-210ENST00000552130 UBOX5O94941 541 aa7.02□□□□□ -1.29
VPS29-210ENST00000552130 TGDSO95455 350 aa7.02□□□□□ -1.29
VPS29-210ENST00000552130 SLC4A1P02730 911 aa7.02□□□□□ -1.29
VPS29-210ENST00000552130 SCG5P05408 212 aa7.02□□□□□ -1.29
VPS29-210ENST00000552130 GSNP06396 782 aa7.02□□□□□ -1.29
VPS29-210ENST00000552130 ABCD1P33897 745 aa7.02□□□□□ -1.29
VPS29-210ENST00000552130 ECI1P42126 302 aa7.02□□□□□ -1.29
VPS29-210ENST00000552130 MTNR1BP49286 362 aa7.02□□□□□ -1.29
VPS29-210ENST00000552130 RNASE9P60153 205 aaKnown RBP7.02□□□□□ -1.29
VPS29-210ENST00000552130 UBXN2AP68543 259 aa7.02□□□□□ -1.29
VPS29-210ENST00000552130 SRSF2Q01130 221 aaKnown RBP7.02□□□□□ -1.29
VPS29-210ENST00000552130 TEKQ02763 1124 aa7.02□□□□□ -1.29
VPS29-210ENST00000552130 CHRNEQ04844 493 aa7.02□□□□□ -1.29
VPS29-210ENST00000552130 MAPK7Q13164 816 aa7.02□□□□□ -1.29
VPS29-210ENST00000552130 MOGSQ13724 837 aa7.02□□□□□ -1.29
VPS29-210ENST00000552130 ERV3-1Q14264 604 aa7.02□□□□□ -1.29
VPS29-210ENST00000552130 BECN1Q14457 450 aa7.02□□□□□ -1.29
VPS29-210ENST00000552130 PDCD1Q15116 288 aa7.02□□□□□ -1.29
VPS29-210ENST00000552130 SMAD1Q15797 465 aaKnown RBP7.02□□□□□ -1.29
VPS29-210ENST00000552130 METTL24Q5JXM2 366 aa7.02□□□□□ -1.29
VPS29-210ENST00000552130 DBX2Q6ZNG2 339 aa7.02□□□□□ -1.29
VPS29-210ENST00000552130 DNAJB7Q7Z6W7 309 aaPredicted RBP7.02□□□□□ -1.29
VPS29-210ENST00000552130 NBPF5PQ86XG9 351 aaPredicted RBP7.02□□□□□ -1.29
VPS29-210ENST00000552130 CPOQ8IVL8 374 aa7.02□□□□□ -1.29
VPS29-210ENST00000552130 TMEM151BQ8IW70 566 aa7.02□□□□□ -1.29
VPS29-210ENST00000552130 TRMT2AQ8IZ69 625 aaKnown RBP7.02□□□□□ -1.29
VPS29-210ENST00000552130 TSPYL6Q8N831 410 aa7.02□□□□□ -1.29
VPS29-210ENST00000552130 ANKS4BQ8N8V4 417 aa7.02□□□□□ -1.29
VPS29-210ENST00000552130 ADAMTS15Q8TE58 950 aa7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 71.7 ms