RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 CASD1Q96PB1 797 aa16.27■□□□□ 0.2
NUP54-213ENST00000513352 FAM193BQ96PV7 902 aaPredicted RBP16.27■□□□□ 0.2
NUP54-213ENST00000513352 RAD9AQ99638 391 aa16.27■□□□□ 0.2
NUP54-213ENST00000513352 MRPL9Q9BYD2 267 aaKnown RBP16.27■□□□□ 0.2
NUP54-213ENST00000513352 MSRAQ9UJ68 235 aa16.27■□□□□ 0.2
NUP54-213ENST00000513352 ANK1P16157 1881 aa16.27■□□□□ 0.19
NUP54-213ENST00000513352 LACTBL1A8MY62 500 aa16.26■□□□□ 0.19
NUP54-213ENST00000513352 EPB41P11171 864 aaKnown RBP16.26■□□□□ 0.19
NUP54-213ENST00000513352 MYOGP15173 224 aa16.26■□□□□ 0.19
NUP54-213ENST00000513352 CASP4P49662 377 aa16.26■□□□□ 0.19
NUP54-213ENST00000513352 FKBP3Q00688 224 aaKnown RBP16.26■□□□□ 0.19
NUP54-213ENST00000513352 SPAG1Q07617 926 aa16.26■□□□□ 0.19
NUP54-213ENST00000513352 MYBPC2Q14324 1141 aa16.26■□□□□ 0.19
NUP54-213ENST00000513352 NFIL3Q16649 462 aa16.26■□□□□ 0.19
NUP54-213ENST00000513352 SLC10A6Q3KNW5 377 aa16.26■□□□□ 0.19
NUP54-213ENST00000513352 ANO6Q4KMQ2 910 aa16.26■□□□□ 0.19
NUP54-213ENST00000513352 TTI2Q6NXR4 508 aa16.26■□□□□ 0.19
NUP54-213ENST00000513352 CRELD2Q6UXH1 353 aaPredicted RBP16.26■□□□□ 0.19
NUP54-213ENST00000513352 BRSK2Q8IWQ3 736 aa16.26■□□□□ 0.19
NUP54-213ENST00000513352 CMTR2Q8IYT2 770 aaKnown RBP16.26■□□□□ 0.19
NUP54-213ENST00000513352 CRIPAKQ8N1N5 446 aa16.26■□□□□ 0.19
NUP54-213ENST00000513352 LRRC43Q8N309 656 aa16.26■□□□□ 0.19
NUP54-213ENST00000513352 KIF12Q96FN5 646 aa16.26■□□□□ 0.19
NUP54-213ENST00000513352 DMAC2Q9NW81 257 aa16.26■□□□□ 0.19
NUP54-213ENST00000513352 PDCD11Q14690 1871 aaKnown RBP16.26■□□□□ 0.19
NUP54-213ENST00000513352 IL18RAPO95256 599 aa16.25■□□□□ 0.19
NUP54-213ENST00000513352 THP07101 528 aa16.25■□□□□ 0.19
NUP54-213ENST00000513352 ADRB2P07550 413 aa16.25■□□□□ 0.19
NUP54-213ENST00000513352 ERCC5P28715 1186 aaPredicted RBP16.25■□□□□ 0.19
NUP54-213ENST00000513352 PSMC2P35998 433 aaKnown RBP16.25■□□□□ 0.19
NUP54-213ENST00000513352 AFF1P51825 1210 aaKnown RBP16.25■□□□□ 0.19
NUP54-213ENST00000513352 HTRA4P83105 476 aaPredicted RBP16.25■□□□□ 0.19
NUP54-213ENST00000513352 RAB30Q15771 203 aa16.25■□□□□ 0.19
NUP54-213ENST00000513352 CCDC40Q4G0X9 1142 aa16.25■□□□□ 0.19
NUP54-213ENST00000513352 CREBRFQ8IUR6 639 aa16.25■□□□□ 0.19
NUP54-213ENST00000513352 FAM186BQ8IYM0 893 aa16.25■□□□□ 0.19
NUP54-213ENST00000513352 FIBCD1Q8N539 461 aa16.25■□□□□ 0.19
NUP54-213ENST00000513352 ZNF689Q96CS4 500 aaPredicted RBP16.25■□□□□ 0.19
NUP54-213ENST00000513352 FNBP1Q96RU3 617 aa16.25■□□□□ 0.19
NUP54-213ENST00000513352 DUSP9Q99956 384 aaKnown RBP16.25■□□□□ 0.19
NUP54-213ENST00000513352 NAT10Q9H0A0 1025 aaKnown RBP16.25■□□□□ 0.19
NUP54-213ENST00000513352 CXCL16Q9H2A7 254 aa16.25■□□□□ 0.19
NUP54-213ENST00000513352 PLEKHA5Q9HAU0 1116 aa16.25■□□□□ 0.19
NUP54-213ENST00000513352 PDE11AQ9HCR9 933 aa16.25■□□□□ 0.19
NUP54-213ENST00000513352 TBC1D13Q9NVG8 400 aa16.25■□□□□ 0.19
NUP54-213ENST00000513352 CNTN3Q9P232 1028 aa16.25■□□□□ 0.19
NUP54-213ENST00000513352 KANSL3Q9P2N6 904 aa16.25■□□□□ 0.19
NUP54-213ENST00000513352 HCSTQ9UBK5 93 aa16.25■□□□□ 0.19
NUP54-213ENST00000513352 PCDHA11Q9Y5I1 949 aa16.25■□□□□ 0.19
NUP54-213ENST00000513352 A0A1W2PPC1 479 aa16.24■□□□□ 0.19
NUP54-213ENST00000513352 TTC26A0AVF1 554 aa16.24■□□□□ 0.19
NUP54-213ENST00000513352 LCHNA4D1U4 455 aa16.24■□□□□ 0.19
NUP54-213ENST00000513352 PTGESO14684 152 aa16.24■□□□□ 0.19
NUP54-213ENST00000513352 ZC3H11AO75152 810 aaKnown RBP eCLIP16.24■□□□□ 0.19
NUP54-213ENST00000513352 AKAP3O75969 853 aa16.24■□□□□ 0.19
NUP54-213ENST00000513352 FGFR1OPO95684 399 aaKnown RBP16.24■□□□□ 0.19
NUP54-213ENST00000513352 DLATP10515 647 aaKnown RBP16.24■□□□□ 0.19
NUP54-213ENST00000513352 KRT13P13646 458 aa16.24■□□□□ 0.19
NUP54-213ENST00000513352 PBX2P40425 430 aa16.24■□□□□ 0.19
NUP54-213ENST00000513352 CYP24A1Q07973 514 aa16.24■□□□□ 0.19
NUP54-213ENST00000513352 GRIK3Q13003 919 aa16.24■□□□□ 0.19
NUP54-213ENST00000513352 TMEM132DQ14C87 1099 aa16.24■□□□□ 0.19
NUP54-213ENST00000513352 JADE1Q6IE81 842 aa16.24■□□□□ 0.19
NUP54-213ENST00000513352 CD302Q8IX05 232 aa16.24■□□□□ 0.19
NUP54-213ENST00000513352 RSPH1Q8WYR4 309 aa16.24■□□□□ 0.19
NUP54-213ENST00000513352 CCDC127Q96BQ5 260 aa16.24■□□□□ 0.19
NUP54-213ENST00000513352 FBXL18Q96ME1 805 aa16.24■□□□□ 0.19
NUP54-213ENST00000513352 CEP63Q96MT8 703 aa16.24■□□□□ 0.19
NUP54-213ENST00000513352 SRRTQ9BXP5 876 aaKnown RBP16.24■□□□□ 0.19
NUP54-213ENST00000513352 PBX4Q9BYU1 374 aa16.24■□□□□ 0.19
NUP54-213ENST00000513352 NKX2-4Q9H2Z4 354 aa16.24■□□□□ 0.19
NUP54-213ENST00000513352 MIOSQ9NXC5 875 aa16.24■□□□□ 0.19
NUP54-213ENST00000513352 PLAGL2Q9UPG8 496 aa16.24■□□□□ 0.19
NUP54-213ENST00000513352 MRPL42Q9Y6G3 142 aaKnown RBP16.24■□□□□ 0.19
NUP54-213ENST00000513352 TRIOBPQ9H2D6 2365 aa16.24■□□□□ 0.19
NUP54-213ENST00000513352 COL4A6Q14031 1691 aa16.24■□□□□ 0.19
NUP54-213ENST00000513352 SMIM28A0A1B0GU29 152 aa16.23■□□□□ 0.19
NUP54-213ENST00000513352 MEFVO15553 781 aaPredicted RBP16.23■□□□□ 0.19
NUP54-213ENST00000513352 XPOTO43592 962 aaKnown RBP16.23■□□□□ 0.19
NUP54-213ENST00000513352 CA3P07451 260 aa16.23■□□□□ 0.19
NUP54-213ENST00000513352 NFICP08651 508 aa16.23■□□□□ 0.19
NUP54-213ENST00000513352 TFAMQ00059 246 aaKnown RBP16.23■□□□□ 0.19
NUP54-213ENST00000513352 SURF1Q15526 300 aa16.23■□□□□ 0.19
NUP54-213ENST00000513352 CT47A1Q5JQC4 288 aaPredicted RBP16.23■□□□□ 0.19
NUP54-213ENST00000513352 LMBRD2Q68DH5 695 aaPredicted RBP16.23■□□□□ 0.19
NUP54-213ENST00000513352 LRRC55Q6ZSA7 311 aa16.23■□□□□ 0.19
NUP54-213ENST00000513352 ASB7Q9H672 318 aa16.23■□□□□ 0.19
NUP54-213ENST00000513352 RC3H2Q9HBD1 1191 aaKnown RBP16.23■□□□□ 0.19
NUP54-213ENST00000513352 SLC38A7Q9NVC3 462 aa16.23■□□□□ 0.19
NUP54-213ENST00000513352 YBX2Q9Y2T7 364 aaKnown RBP16.23■□□□□ 0.19
NUP54-213ENST00000513352 KIAA1671Q9BY89 1806 aa16.23■□□□□ 0.19
NUP54-213ENST00000513352 NLRC5Q86WI3 1866 aa16.22■□□□□ 0.19
NUP54-213ENST00000513352 CASTOR2A6NHX0 329 aa16.22■□□□□ 0.19
NUP54-213ENST00000513352 INPPL1O15357 1258 aa16.22■□□□□ 0.19
NUP54-213ENST00000513352 SLC16A3O15427 465 aaKnown RBP16.22■□□□□ 0.19
NUP54-213ENST00000513352 TMEM191BP0C7N4 346 aa16.22■□□□□ 0.19
NUP54-213ENST00000513352 KCNE1P15382 129 aa16.22■□□□□ 0.19
NUP54-213ENST00000513352 TNNI1P19237 187 aa16.22■□□□□ 0.19
NUP54-213ENST00000513352 DNAJB2P25686 324 aa16.22■□□□□ 0.19
NUP54-213ENST00000513352 OR1G1P47890 313 aa16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms