RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 WBP1LQ9NX94 342 aa9.38□□□□□ -0.91
LIMCH1-209ENST00000509277 PDE4DIPQ5VU43 2346 aa9.38□□□□□ -0.91
LIMCH1-209ENST00000509277 ESYT3A0FGR9 886 aa9.37□□□□□ -0.91
LIMCH1-209ENST00000509277 KCNJ18B7U540 433 aa9.37□□□□□ -0.91
LIMCH1-209ENST00000509277 KBTBD13C9JR72 458 aa9.37□□□□□ -0.91
LIMCH1-209ENST00000509277 TEX33O43247 280 aa9.37□□□□□ -0.91
LIMCH1-209ENST00000509277 CCNE1P24864 410 aa9.37□□□□□ -0.91
LIMCH1-209ENST00000509277 APBA1Q02410 837 aa9.37□□□□□ -0.91
LIMCH1-209ENST00000509277 LAMTOR4Q0VGL1 99 aa9.37□□□□□ -0.91
LIMCH1-209ENST00000509277 KCNJ12Q14500 433 aa9.37□□□□□ -0.91
LIMCH1-209ENST00000509277 FILIP1LQ4L180 1135 aa9.37□□□□□ -0.91
LIMCH1-209ENST00000509277 ZBTB8OSQ8IWT0 167 aa9.37□□□□□ -0.91
LIMCH1-209ENST00000509277 CCDC155Q8N6L0 562 aa9.37□□□□□ -0.91
LIMCH1-209ENST00000509277 ZSWIM2Q8NEG5 633 aa9.37□□□□□ -0.91
LIMCH1-209ENST00000509277 USP6NLQ92738 828 aa9.37□□□□□ -0.91
LIMCH1-209ENST00000509277 NAPGQ99747 312 aaPredicted RBP9.37□□□□□ -0.91
LIMCH1-209ENST00000509277 CBWD1Q9BRT8 395 aa9.37□□□□□ -0.91
LIMCH1-209ENST00000509277 C16orf70Q9BSU1 422 aa9.37□□□□□ -0.91
LIMCH1-209ENST00000509277 NOC4LQ9BVI4 516 aaKnown RBP9.37□□□□□ -0.91
LIMCH1-209ENST00000509277 PRDM5Q9NQX1 630 aaPredicted RBP9.37□□□□□ -0.91
LIMCH1-209ENST00000509277 STARD7Q9NQZ5 370 aa9.37□□□□□ -0.91
LIMCH1-209ENST00000509277 TRMT13Q9NUP7 481 aaKnown RBP9.37□□□□□ -0.91
LIMCH1-209ENST00000509277 FAM53CQ9NYF3 392 aa9.37□□□□□ -0.91
LIMCH1-209ENST00000509277 DDX20Q9UHI6 824 aaKnown RBP9.37□□□□□ -0.91
LIMCH1-209ENST00000509277 GGT7Q9UJ14 662 aa9.37□□□□□ -0.91
LIMCH1-209ENST00000509277 BICDL2A1A5D9 508 aa9.37□□□□□ -0.91
LIMCH1-209ENST00000509277 CETN3O15182 167 aa9.37□□□□□ -0.91
LIMCH1-209ENST00000509277 ZNF185O15231 689 aa9.37□□□□□ -0.91
LIMCH1-209ENST00000509277 TRIM49P0CI25 452 aa9.37□□□□□ -0.91
LIMCH1-209ENST00000509277 TRIM49CP0CI26 452 aa9.37□□□□□ -0.91
LIMCH1-209ENST00000509277 XRCC5P13010 732 aaKnown RBP9.37□□□□□ -0.91
LIMCH1-209ENST00000509277 GAP43P17677 238 aa9.37□□□□□ -0.91
LIMCH1-209ENST00000509277 GLRA2P23416 452 aa9.37□□□□□ -0.91
LIMCH1-209ENST00000509277 CASP14P31944 242 aa9.37□□□□□ -0.91
LIMCH1-209ENST00000509277 THPOP40225 353 aa9.37□□□□□ -0.91
LIMCH1-209ENST00000509277 IRAK1P51617 712 aa9.37□□□□□ -0.91
LIMCH1-209ENST00000509277 UBXN1Q04323 297 aa9.37□□□□□ -0.91
LIMCH1-209ENST00000509277 MYO1EQ12965 1108 aa9.37□□□□□ -0.91
LIMCH1-209ENST00000509277 SPATA1Q5VX52 437 aa9.37□□□□□ -0.91
LIMCH1-209ENST00000509277 CATSPER4Q7RTX7 472 aa9.37□□□□□ -0.91
LIMCH1-209ENST00000509277 KIFAP3Q92845 792 aa9.37□□□□□ -0.91
LIMCH1-209ENST00000509277 FAM213AQ9BRX8 229 aa9.37□□□□□ -0.91
LIMCH1-209ENST00000509277 GNEQ9Y223 722 aaKnown RBP9.37□□□□□ -0.91
LIMCH1-209ENST00000509277 IGSF9BQ9UPX0 1349 aa9.37□□□□□ -0.91
LIMCH1-209ENST00000509277 C17orf102A2RUQ5 167 aa9.37□□□□□ -0.91
LIMCH1-209ENST00000509277 AKR1B15C9JRZ8 316 aaPredicted RBP9.37□□□□□ -0.91
LIMCH1-209ENST00000509277 NKRFO15226 690 aaKnown RBP eCLIP9.37□□□□□ -0.91
LIMCH1-209ENST00000509277 B4GALT5O43286 388 aa9.37□□□□□ -0.91
LIMCH1-209ENST00000509277 CSPG5O95196 566 aa9.37□□□□□ -0.91
LIMCH1-209ENST00000509277 KNOP1Q1ED39 458 aaKnown RBP9.37□□□□□ -0.91
LIMCH1-209ENST00000509277 SPECC1LQ69YQ0 1117 aa9.37□□□□□ -0.91
LIMCH1-209ENST00000509277 PPP1R12CQ9BZL4 782 aa9.37□□□□□ -0.91
LIMCH1-209ENST00000509277 XRN2Q9H0D6 950 aaKnown RBP eCLIP9.37□□□□□ -0.91
LIMCH1-209ENST00000509277 DBR1Q9UK59 544 aaKnown RBP9.37□□□□□ -0.91
LIMCH1-209ENST00000509277 L1RE1Q9UN81 338 aa9.37□□□□□ -0.91
LIMCH1-209ENST00000509277 ADGRA3Q8IWK6 1321 aa9.37□□□□□ -0.91
LIMCH1-209ENST00000509277 KRT14P02533 472 aa9.36□□□□□ -0.91
LIMCH1-209ENST00000509277 ARID5AQ03989 594 aa9.36□□□□□ -0.91
LIMCH1-209ENST00000509277 MAPK7Q13164 816 aa9.36□□□□□ -0.91
LIMCH1-209ENST00000509277 CAPSQ13938 189 aa9.36□□□□□ -0.91
LIMCH1-209ENST00000509277 KCNB1Q14721 858 aa9.36□□□□□ -0.91
LIMCH1-209ENST00000509277 PPP1R7Q15435 360 aa9.36□□□□□ -0.91
LIMCH1-209ENST00000509277 RUFY4Q6ZNE9 571 aa9.36□□□□□ -0.91
LIMCH1-209ENST00000509277 SLAIN1Q8ND83 568 aa9.36□□□□□ -0.91
LIMCH1-209ENST00000509277 MED15Q96RN5 788 aa9.36□□□□□ -0.91
LIMCH1-209ENST00000509277 LCTP09848 1927 aa9.36□□□□□ -0.91
LIMCH1-209ENST00000509277 TRIP12Q14669 1992 aaPredicted RBP9.36□□□□□ -0.91
LIMCH1-209ENST00000509277 M0QZ92 97 aa9.36□□□□□ -0.91
LIMCH1-209ENST00000509277 NR3C1P04150 777 aa9.36□□□□□ -0.91
LIMCH1-209ENST00000509277 MYL1P05976 194 aa9.36□□□□□ -0.91
LIMCH1-209ENST00000509277 CCL5P13501 91 aa9.36□□□□□ -0.91
LIMCH1-209ENST00000509277 RBL2Q08999 1139 aa9.36□□□□□ -0.91
LIMCH1-209ENST00000509277 CCDC122Q5T0U0 273 aa9.36□□□□□ -0.91
LIMCH1-209ENST00000509277 ZNF720Q7Z2F6 126 aa9.36□□□□□ -0.91
LIMCH1-209ENST00000509277 ACCSQ96QU6 501 aa9.36□□□□□ -0.91
LIMCH1-209ENST00000509277 CEP89Q96ST8 783 aa9.36□□□□□ -0.91
LIMCH1-209ENST00000509277 MTG1Q9BT17 334 aaPredicted RBP9.36□□□□□ -0.91
LIMCH1-209ENST00000509277 TRPV6Q9H1D0 765 aa9.36□□□□□ -0.91
LIMCH1-209ENST00000509277 FRMD4BQ9Y2L6 1034 aa9.36□□□□□ -0.91
LIMCH1-209ENST00000509277 TTLL13PA6NNM8 815 aa9.36□□□□□ -0.91
LIMCH1-209ENST00000509277 ANKRD63C9JTQ0 380 aa9.36□□□□□ -0.91
LIMCH1-209ENST00000509277 ATP8B1O43520 1251 aa9.36□□□□□ -0.91
LIMCH1-209ENST00000509277 CALUO43852 315 aaPredicted RBP9.36□□□□□ -0.91
LIMCH1-209ENST00000509277 MAPK6Q16659 721 aa9.36□□□□□ -0.91
LIMCH1-209ENST00000509277 CDHR5Q9HBB8 845 aa9.36□□□□□ -0.91
LIMCH1-209ENST00000509277 FAM207AQ9NSI2 230 aaPredicted RBP9.36□□□□□ -0.91
LIMCH1-209ENST00000509277 RWDD2AQ9UIY3 292 aa9.36□□□□□ -0.91
LIMCH1-209ENST00000509277 ATP11BQ9Y2G3 1177 aa9.36□□□□□ -0.91
LIMCH1-209ENST00000509277 GOLGA6L9A6NEM1 432 aa9.35□□□□□ -0.91
LIMCH1-209ENST00000509277 A6NJR5 290 aa9.35□□□□□ -0.91
LIMCH1-209ENST00000509277 ATG7O95352 703 aa9.35□□□□□ -0.91
LIMCH1-209ENST00000509277 PRKCBP05771 671 aa9.35□□□□□ -0.91
LIMCH1-209ENST00000509277 PURAQ00577 322 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-209ENST00000509277 MTHFD1LQ6UB35 978 aa9.35□□□□□ -0.91
LIMCH1-209ENST00000509277 PLPPR4Q7Z2D5 763 aa9.35□□□□□ -0.91
LIMCH1-209ENST00000509277 SESTD1Q86VW0 696 aa9.35□□□□□ -0.91
LIMCH1-209ENST00000509277 GUF1Q8N442 669 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-209ENST00000509277 MORC4Q8TE76 937 aa9.35□□□□□ -0.91
LIMCH1-209ENST00000509277 PARD3BQ8TEW8 1205 aa9.35□□□□□ -0.91
LIMCH1-209ENST00000509277 HAUS2Q9NVX0 235 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 85.5 ms