RNA–Protein interactions for RNA: ENST00000409915.8

SF3B1-202, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2 BASIC

Gene SF3B1, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-202ENST00000409915 KLF1Q13351 362 aaPredicted RBP5.05□□□□□ -1.6
SF3B1-202ENST00000409915 SART3Q15020 963 aaKnown RBP5.05□□□□□ -1.6
SF3B1-202ENST00000409915 SPRED3Q2MJR0 410 aa5.05□□□□□ -1.6
SF3B1-202ENST00000409915 KLHL40Q2TBA0 621 aa5.05□□□□□ -1.6
SF3B1-202ENST00000409915 GNPTABQ3T906 1256 aa5.05□□□□□ -1.6
SF3B1-202ENST00000409915 INTS11Q5TA45 600 aaKnown RBP5.05□□□□□ -1.6
SF3B1-202ENST00000409915 LRCH2Q5VUJ6 765 aa5.05□□□□□ -1.6
SF3B1-202ENST00000409915 B3GNT9Q6UX72 402 aa5.05□□□□□ -1.6
SF3B1-202ENST00000409915 CATSPERGQ6ZRH7 1159 aa5.05□□□□□ -1.6
SF3B1-202ENST00000409915 CYB5R4Q7L1T6 521 aa5.05□□□□□ -1.6
SF3B1-202ENST00000409915 CHST3Q7LGC8 479 aa5.05□□□□□ -1.6
SF3B1-202ENST00000409915 OTOP1Q7RTM1 612 aa5.05□□□□□ -1.6
SF3B1-202ENST00000409915 CTU1Q7Z7A3 348 aaKnown RBP5.05□□□□□ -1.6
SF3B1-202ENST00000409915 SNX32Q86XE0 403 aa5.05□□□□□ -1.6
SF3B1-202ENST00000409915 SLFN12Q8IYM2 578 aa5.05□□□□□ -1.6
SF3B1-202ENST00000409915 MSL3Q8N5Y2 521 aaKnown RBP5.05□□□□□ -1.6
SF3B1-202ENST00000409915 NKAIN3Q8N8D7 197 aa5.05□□□□□ -1.6
SF3B1-202ENST00000409915 GSTCDQ8NEC7 633 aa5.05□□□□□ -1.6
SF3B1-202ENST00000409915 C1orf162Q8NEQ5 155 aaPredicted RBP5.05□□□□□ -1.6
SF3B1-202ENST00000409915 SLC35G2Q8TBE7 412 aa5.05□□□□□ -1.6
SF3B1-202ENST00000409915 ATRIPQ8WXE1 791 aa5.05□□□□□ -1.6
SF3B1-202ENST00000409915 ESR2Q92731 530 aa5.05□□□□□ -1.6
SF3B1-202ENST00000409915 MAP4K1Q92918 833 aa5.05□□□□□ -1.6
SF3B1-202ENST00000409915 ATG4CQ96DT6 458 aa5.05□□□□□ -1.6
SF3B1-202ENST00000409915 FAXDC2Q96IV6 333 aa5.05□□□□□ -1.6
SF3B1-202ENST00000409915 CDHR1Q96JP9 859 aa5.05□□□□□ -1.6
SF3B1-202ENST00000409915 TBC1D32Q96NH3 1257 aa5.05□□□□□ -1.6
SF3B1-202ENST00000409915 CNTNAP3BQ96NU0 1288 aa5.05□□□□□ -1.6
SF3B1-202ENST00000409915 TAAR9Q96RI9 348 aa5.05□□□□□ -1.6
SF3B1-202ENST00000409915 PAIP2Q9BPZ3 127 aaKnown RBP5.05□□□□□ -1.6
SF3B1-202ENST00000409915 CNTNAP3Q9BZ76 1288 aa5.05□□□□□ -1.6
SF3B1-202ENST00000409915 MCOLN1Q9GZU1 580 aa5.05□□□□□ -1.6
SF3B1-202ENST00000409915 MYLK2Q9H1R3 596 aa5.05□□□□□ -1.6
SF3B1-202ENST00000409915 RNF41Q9H4P4 317 aaPredicted RBP5.05□□□□□ -1.6
SF3B1-202ENST00000409915 SH2D4AQ9H788 454 aa5.05□□□□□ -1.6
SF3B1-202ENST00000409915 ZCCHC17Q9NP64 241 aaKnown RBP5.05□□□□□ -1.6
SF3B1-202ENST00000409915 VTA1Q9NP79 307 aa5.05□□□□□ -1.6
SF3B1-202ENST00000409915 NYAP2Q9P242 653 aa5.05□□□□□ -1.6
SF3B1-202ENST00000409915 SUFUQ9UMX1 484 aa5.05□□□□□ -1.6
SF3B1-202ENST00000409915 LRCH1Q9Y2L9 728 aa5.05□□□□□ -1.6
SF3B1-202ENST00000409915 TTLL3Q9Y4R7 772 aa5.05□□□□□ -1.6
SF3B1-202ENST00000409915 SAMM50Q9Y512 469 aa5.05□□□□□ -1.6
SF3B1-202ENST00000409915 MYH4Q9Y623 1939 aa5.04□□□□□ -1.6
SF3B1-202ENST00000409915 ZNF891A8MT65 544 aaPredicted RBP5.04□□□□□ -1.6
SF3B1-202ENST00000409915 METTL12A8MUP2 240 aa5.04□□□□□ -1.6
SF3B1-202ENST00000409915 E7EWF7 191 aa5.04□□□□□ -1.6
SF3B1-202ENST00000409915 F5H6K3 240 aa5.04□□□□□ -1.6
SF3B1-202ENST00000409915 WDR46O15213 610 aaKnown RBP5.04□□□□□ -1.6
SF3B1-202ENST00000409915 NCAM2O15394 837 aa5.04□□□□□ -1.6
SF3B1-202ENST00000409915 AP1G1O43747 822 aa5.04□□□□□ -1.6
SF3B1-202ENST00000409915 EFCAB14O75071 495 aa5.04□□□□□ -1.6
SF3B1-202ENST00000409915 GFPT2O94808 682 aa5.04□□□□□ -1.6
SF3B1-202ENST00000409915 IPO7O95373 1038 aaKnown RBP5.04□□□□□ -1.6
SF3B1-202ENST00000409915 CNOT4O95628 575 aaKnown RBP5.04□□□□□ -1.6
SF3B1-202ENST00000409915 CD4P01730 458 aa5.04□□□□□ -1.6
SF3B1-202ENST00000409915 C6orf222P0C671 652 aaPredicted RBP5.04□□□□□ -1.6
SF3B1-202ENST00000409915 FGFR1P11362 822 aa5.04□□□□□ -1.6
SF3B1-202ENST00000409915 PABPC1P11940 636 aaKnown RBP5.04□□□□□ -1.6
SF3B1-202ENST00000409915 BMP6P22004 513 aa5.04□□□□□ -1.6
SF3B1-202ENST00000409915 HOXA7P31268 230 aaPredicted RBP5.04□□□□□ -1.6
SF3B1-202ENST00000409915 GRIK1P39086 918 aa5.04□□□□□ -1.6
SF3B1-202ENST00000409915 ADCYAP1R1P41586 468 aa5.04□□□□□ -1.6
SF3B1-202ENST00000409915 PSMC4P43686 418 aa5.04□□□□□ -1.6
SF3B1-202ENST00000409915 CD151P48509 253 aa5.04□□□□□ -1.6
SF3B1-202ENST00000409915 HNRNPH2P55795 449 aaKnown RBP5.04□□□□□ -1.6
SF3B1-202ENST00000409915 ANTXR2P58335 489 aa5.04□□□□□ -1.6
SF3B1-202ENST00000409915 SNAP25P60880 206 aa5.04□□□□□ -1.6
SF3B1-202ENST00000409915 ERVK-24P63145 666 aa5.04□□□□□ -1.6
SF3B1-202ENST00000409915 LACTBP83111 547 aaPredicted RBP5.04□□□□□ -1.6
SF3B1-202ENST00000409915 MPP1Q00013 466 aa5.04□□□□□ -1.6
SF3B1-202ENST00000409915 KLRC3Q07444 240 aa5.04□□□□□ -1.6
SF3B1-202ENST00000409915 WASHC5Q12768 1159 aa5.04□□□□□ -1.6
SF3B1-202ENST00000409915 PLS1Q14651 629 aa5.04□□□□□ -1.6
SF3B1-202ENST00000409915 FAM110CQ1W6H9 321 aa5.04□□□□□ -1.6
SF3B1-202ENST00000409915 PIK3R6Q5UE93 754 aa5.04□□□□□ -1.6
SF3B1-202ENST00000409915 CREB3L3Q68CJ9 461 aa5.04□□□□□ -1.6
SF3B1-202ENST00000409915 SLFN13Q68D06 897 aa5.04□□□□□ -1.6
SF3B1-202ENST00000409915 OVOS1Q6IE37 1185 aa5.04□□□□□ -1.6
SF3B1-202ENST00000409915 RCSD1Q6JBY9 416 aa5.04□□□□□ -1.6
SF3B1-202ENST00000409915 TLDC1Q6P9B6 456 aa5.04□□□□□ -1.6
SF3B1-202ENST00000409915 PGM2L1Q6PCE3 622 aa5.04□□□□□ -1.6
SF3B1-202ENST00000409915 NSMFQ6X4W1 530 aa5.04□□□□□ -1.6
SF3B1-202ENST00000409915 KCTD1Q719H9 257 aa5.04□□□□□ -1.6
SF3B1-202ENST00000409915 SRGAP1Q7Z6B7 1085 aa5.04□□□□□ -1.6
SF3B1-202ENST00000409915 RALYLQ86SE5 291 aaKnown RBP5.04□□□□□ -1.6
SF3B1-202ENST00000409915 KRT222Q8N1A0 295 aa5.04□□□□□ -1.6
SF3B1-202ENST00000409915 FRS2Q8WU20 508 aa5.04□□□□□ -1.6
SF3B1-202ENST00000409915 LPAR1Q92633 364 aa5.04□□□□□ -1.6
SF3B1-202ENST00000409915 GAL3ST3Q96A11 431 aa5.04□□□□□ -1.6
SF3B1-202ENST00000409915 ZBTB10Q96DT7 871 aa5.04□□□□□ -1.6
SF3B1-202ENST00000409915 ERO1AQ96HE7 468 aa5.04□□□□□ -1.6
SF3B1-202ENST00000409915 AHCYL2Q96HN2 611 aaKnown RBP5.04□□□□□ -1.6
SF3B1-202ENST00000409915 SCLYQ96I15 445 aa5.04□□□□□ -1.6
SF3B1-202ENST00000409915 TCEANC2Q96MN5 208 aa5.04□□□□□ -1.6
SF3B1-202ENST00000409915 OSMRQ99650 979 aa5.04□□□□□ -1.6
SF3B1-202ENST00000409915 TMEM47Q9BQJ4 181 aa5.04□□□□□ -1.6
SF3B1-202ENST00000409915 LRRC2Q9BYS8 371 aa5.04□□□□□ -1.6
SF3B1-202ENST00000409915 WDR12Q9GZL7 423 aaKnown RBP5.04□□□□□ -1.6
SF3B1-202ENST00000409915 PORCNQ9H237 461 aa5.04□□□□□ -1.6
SF3B1-202ENST00000409915 CPVLQ9H3G5 476 aa5.04□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms