RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 LRRC14Q15048 493 aa5.92□□□□□ -1.46
LIMA1-203ENST00000547825 SEZ6Q53EL9 994 aa5.92□□□□□ -1.46
LIMA1-203ENST00000547825 ADAMTSL4Q6UY14 1074 aa5.92□□□□□ -1.46
LIMA1-203ENST00000547825 MB21D1Q8N884 522 aa5.92□□□□□ -1.46
LIMA1-203ENST00000547825 FAM133AQ8N9E0 248 aa5.92□□□□□ -1.46
LIMA1-203ENST00000547825 CCT8L2Q96SF2 557 aa5.92□□□□□ -1.46
LIMA1-203ENST00000547825 DDX47Q9H0S4 455 aaKnown RBP5.92□□□□□ -1.46
LIMA1-203ENST00000547825 GOLPH3Q9H4A6 298 aa5.92□□□□□ -1.46
LIMA1-203ENST00000547825 GREM2Q9H772 168 aa5.92□□□□□ -1.46
LIMA1-203ENST00000547825 ZBTB21Q9ULJ3 1066 aa5.92□□□□□ -1.46
LIMA1-203ENST00000547825 HPCAL4Q9UM19 191 aa5.92□□□□□ -1.46
LIMA1-203ENST00000547825 IKBKGQ9Y6K9 419 aa5.92□□□□□ -1.46
LIMA1-203ENST00000547825 TMEM238LA0A1B0GVL6 79 aa5.92□□□□□ -1.46
LIMA1-203ENST00000547825 SH2B2O14492 632 aaPredicted RBP5.92□□□□□ -1.46
LIMA1-203ENST00000547825 SMAD7O15105 426 aaKnown RBP5.92□□□□□ -1.46
LIMA1-203ENST00000547825 CHMP2AO43633 222 aa5.92□□□□□ -1.46
LIMA1-203ENST00000547825 PLEKHA8P1O95397 391 aa5.92□□□□□ -1.46
LIMA1-203ENST00000547825 BAG2O95816 211 aa5.92□□□□□ -1.46
LIMA1-203ENST00000547825 GYPCP04921 128 aa5.92□□□□□ -1.46
LIMA1-203ENST00000547825 GYG1P46976 350 aa5.92□□□□□ -1.46
LIMA1-203ENST00000547825 C6orf163Q5TEZ5 329 aa5.92□□□□□ -1.46
LIMA1-203ENST00000547825 ZNF449Q6P9G9 518 aa5.92□□□□□ -1.46
LIMA1-203ENST00000547825 NLRP14Q86W24 1093 aa5.92□□□□□ -1.46
LIMA1-203ENST00000547825 DDX42Q86XP3 938 aaKnown RBP eCLIP5.92□□□□□ -1.46
LIMA1-203ENST00000547825 VPS52Q8N1B4 723 aa5.92□□□□□ -1.46
LIMA1-203ENST00000547825 MCUR1Q96AQ8 359 aa5.92□□□□□ -1.46
LIMA1-203ENST00000547825 GAS2L1Q99501 681 aaPredicted RBP5.92□□□□□ -1.46
LIMA1-203ENST00000547825 OSMRQ99650 979 aa5.92□□□□□ -1.46
LIMA1-203ENST00000547825 BPIFA3Q9BQP9 254 aa5.92□□□□□ -1.46
LIMA1-203ENST00000547825 SDAD1Q9NVU7 687 aaKnown RBP eCLIP5.92□□□□□ -1.46
LIMA1-203ENST00000547825 GJA3Q9Y6H8 435 aa5.92□□□□□ -1.46
LIMA1-203ENST00000547825 PDS5AQ29RF7 1337 aaKnown RBP5.92□□□□□ -1.46
LIMA1-203ENST00000547825 hCG_2014768A0A024R1R8 64 aa5.92□□□□□ -1.46
LIMA1-203ENST00000547825 A0A1B0GTH6 734 aa5.92□□□□□ -1.46
LIMA1-203ENST00000547825 CAPN5O15484 640 aaPredicted RBP5.92□□□□□ -1.46
LIMA1-203ENST00000547825 EGFRP00533 1210 aa5.92□□□□□ -1.46
LIMA1-203ENST00000547825 VIL1P09327 827 aaKnown RBP5.92□□□□□ -1.46
LIMA1-203ENST00000547825 ZNF18P17022 549 aa5.92□□□□□ -1.46
LIMA1-203ENST00000547825 HSD3B2P26439 372 aa5.92□□□□□ -1.46
LIMA1-203ENST00000547825 CDC25CP30307 473 aa5.92□□□□□ -1.46
LIMA1-203ENST00000547825 ALDH3A1P30838 453 aa5.92□□□□□ -1.46
LIMA1-203ENST00000547825 CARSP49589 748 aaKnown RBP5.92□□□□□ -1.46
LIMA1-203ENST00000547825 ZBED6P86452 979 aa5.92□□□□□ -1.46
LIMA1-203ENST00000547825 TAF11Q15544 211 aa5.92□□□□□ -1.46
LIMA1-203ENST00000547825 CCNI2Q6ZMN8 369 aaPredicted RBP5.92□□□□□ -1.46
LIMA1-203ENST00000547825 APBB1IPQ7Z5R6 666 aaPredicted RBP5.92□□□□□ -1.46
LIMA1-203ENST00000547825 TBC1D16Q8TBP0 767 aa5.92□□□□□ -1.46
LIMA1-203ENST00000547825 SH3TC2Q8TF17 1288 aa5.92□□□□□ -1.46
LIMA1-203ENST00000547825 DNAJC7Q99615 494 aa5.92□□□□□ -1.46
LIMA1-203ENST00000547825 IQCGQ9H095 443 aaKnown RBP5.92□□□□□ -1.46
LIMA1-203ENST00000547825 STMN4Q9H169 189 aaPredicted RBP5.92□□□□□ -1.46
LIMA1-203ENST00000547825 KLHL14Q9P2G3 628 aa5.92□□□□□ -1.46
LIMA1-203ENST00000547825 MINPP1Q9UNW1 487 aa5.92□□□□□ -1.46
LIMA1-203ENST00000547825 SPDYE3A6NKU9 549 aa5.91□□□□□ -1.46
LIMA1-203ENST00000547825 EIF3HO15372 352 aaKnown RBP eCLIP5.91□□□□□ -1.46
LIMA1-203ENST00000547825 PALMO75781 387 aa5.91□□□□□ -1.46
LIMA1-203ENST00000547825 VEGFAP15692 232 aaPredicted RBP5.91□□□□□ -1.46
LIMA1-203ENST00000547825 IFNAR1P17181 557 aa5.91□□□□□ -1.46
LIMA1-203ENST00000547825 GNAT2P19087 354 aa5.91□□□□□ -1.46
LIMA1-203ENST00000547825 ELF1P32519 619 aa5.91□□□□□ -1.46
LIMA1-203ENST00000547825 KLK7P49862 253 aa5.91□□□□□ -1.46
LIMA1-203ENST00000547825 NR1I3Q14994 352 aa5.91□□□□□ -1.46
LIMA1-203ENST00000547825 RBBP5Q15291 538 aaKnown RBP5.91□□□□□ -1.46
LIMA1-203ENST00000547825 NUGGCQ68CJ6 796 aa5.91□□□□□ -1.46
LIMA1-203ENST00000547825 FAM47EQ6ZV65 393 aa5.91□□□□□ -1.46
LIMA1-203ENST00000547825 BLIDQ8IZY5 108 aa5.91□□□□□ -1.46
LIMA1-203ENST00000547825 OSBPL9Q96SU4 736 aa5.91□□□□□ -1.46
LIMA1-203ENST00000547825 TNKS2Q9H2K2 1166 aa5.91□□□□□ -1.46
LIMA1-203ENST00000547825 FOXP1Q9H334 677 aaPredicted RBP5.91□□□□□ -1.46
LIMA1-203ENST00000547825 YY1P25490 414 aa5.91□□□□□ -1.46
LIMA1-203ENST00000547825 GNA11P29992 359 aa5.91□□□□□ -1.46
LIMA1-203ENST00000547825 GNAQP50148 359 aa5.91□□□□□ -1.46
LIMA1-203ENST00000547825 TRIP13Q15645 432 aaPredicted RBP5.91□□□□□ -1.46
LIMA1-203ENST00000547825 CCDC152Q4G0S7 254 aa5.91□□□□□ -1.46
LIMA1-203ENST00000547825 TBC1D10BQ4KMP7 808 aaPredicted RBP5.91□□□□□ -1.46
LIMA1-203ENST00000547825 PCNX4Q63HM2 1172 aa5.91□□□□□ -1.46
LIMA1-203ENST00000547825 EMBQ6PCB8 327 aa5.91□□□□□ -1.46
LIMA1-203ENST00000547825 POTEGQ6S5H5 508 aa5.91□□□□□ -1.46
LIMA1-203ENST00000547825 NCAPG2Q86XI2 1143 aa5.91□□□□□ -1.46
LIMA1-203ENST00000547825 GPC2Q8N158 579 aa5.91□□□□□ -1.46
LIMA1-203ENST00000547825 LRRC15Q8TF66 581 aa5.91□□□□□ -1.46
LIMA1-203ENST00000547825 HDAC7Q8WUI4 952 aa5.91□□□□□ -1.46
LIMA1-203ENST00000547825 HVCN1Q96D96 273 aa5.91□□□□□ -1.46
LIMA1-203ENST00000547825 ZNF287Q9HBT7 754 aa5.91□□□□□ -1.46
LIMA1-203ENST00000547825 MTUS1Q9ULD2 1270 aa5.91□□□□□ -1.46
LIMA1-203ENST00000547825 SNX24Q9Y343 169 aa5.91□□□□□ -1.46
LIMA1-203ENST00000547825 BPTFQ12830 3046 aa5.91□□□□□ -1.46
LIMA1-203ENST00000547825 GMNCA6NCL1 334 aa5.91□□□□□ -1.46
LIMA1-203ENST00000547825 SMCO2A6NFE2 343 aa5.91□□□□□ -1.46
LIMA1-203ENST00000547825 FLOT1O75955 427 aa5.91□□□□□ -1.46
LIMA1-203ENST00000547825 IFNB1P01574 187 aa5.91□□□□□ -1.46
LIMA1-203ENST00000547825 SCG2P13521 617 aa5.91□□□□□ -1.46
LIMA1-203ENST00000547825 GBP1P32455 592 aa5.91□□□□□ -1.46
LIMA1-203ENST00000547825 LSP1P33241 339 aa5.91□□□□□ -1.46
LIMA1-203ENST00000547825 MCAMP43121 646 aa5.91□□□□□ -1.46
LIMA1-203ENST00000547825 SNX1Q13596 522 aa5.91□□□□□ -1.46
LIMA1-203ENST00000547825 PUM3Q15397 648 aaKnown RBP5.91□□□□□ -1.46
LIMA1-203ENST00000547825 ZNF658Q5TYW1 1059 aaPredicted RBP5.91□□□□□ -1.46
LIMA1-203ENST00000547825 ALS2CLQ60I27 953 aa5.91□□□□□ -1.46
LIMA1-203ENST00000547825 PHLDB2Q86SQ0 1253 aa5.91□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms