RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 IRX1P78414 480 aaPredicted RBP8.29□□□□□ -1.08
VPS13D-211ENST00000543710 DHX9Q08211 1270 aaKnown RBP8.29□□□□□ -1.08
VPS13D-211ENST00000543710 CCDC144BQ3MJ40 725 aa8.29□□□□□ -1.08
VPS13D-211ENST00000543710 LZICQ8WZA0 190 aa8.29□□□□□ -1.08
VPS13D-211ENST00000543710 TDRD3Q9H7E2 651 aaKnown RBP8.29□□□□□ -1.08
VPS13D-211ENST00000543710 SLC39A2Q9NP94 309 aa8.29□□□□□ -1.08
VPS13D-211ENST00000543710 NLRC4Q9NPP4 1024 aa8.29□□□□□ -1.08
VPS13D-211ENST00000543710 UVRAGQ9P2Y5 699 aa8.29□□□□□ -1.08
VPS13D-211ENST00000543710 DDX39AO00148 427 aaKnown RBP8.29□□□□□ -1.08
VPS13D-211ENST00000543710 SDHBP21912 280 aa8.29□□□□□ -1.08
VPS13D-211ENST00000543710 GUCY2CP25092 1073 aa8.29□□□□□ -1.08
VPS13D-211ENST00000543710 NPEPPSP55786 919 aa8.29□□□□□ -1.08
VPS13D-211ENST00000543710 CDK17Q00537 523 aa8.29□□□□□ -1.08
VPS13D-211ENST00000543710 PDE1BQ01064 536 aa8.29□□□□□ -1.08
VPS13D-211ENST00000543710 FBXL13Q8NEE6 735 aa8.29□□□□□ -1.08
VPS13D-211ENST00000543710 HNRNPLLQ8WVV9 542 aaKnown RBP8.29□□□□□ -1.08
VPS13D-211ENST00000543710 CDCA5Q96FF9 252 aa8.29□□□□□ -1.08
VPS13D-211ENST00000543710 ZNF594Q96JF6 807 aaPredicted RBP8.29□□□□□ -1.08
VPS13D-211ENST00000543710 SEPT9Q9UHD8 586 aaPredicted RBP8.29□□□□□ -1.08
VPS13D-211ENST00000543710 CPA4Q9UI42 421 aa8.29□□□□□ -1.08
VPS13D-211ENST00000543710 TEKT2Q9UIF3 430 aa8.29□□□□□ -1.08
VPS13D-211ENST00000543710 PCDHB8Q9UN66 801 aa8.29□□□□□ -1.08
VPS13D-211ENST00000543710 DYNC1LI1Q9Y6G9 523 aaKnown RBP8.29□□□□□ -1.08
VPS13D-211ENST00000543710 GMNCA6NCL1 334 aa8.29□□□□□ -1.08
VPS13D-211ENST00000543710 HMGCRP04035 888 aa8.29□□□□□ -1.08
VPS13D-211ENST00000543710 ESRRAP11474 423 aaPredicted RBP8.29□□□□□ -1.08
VPS13D-211ENST00000543710 CPA1P15085 419 aa8.29□□□□□ -1.08
VPS13D-211ENST00000543710 RANBP1P43487 201 aa8.29□□□□□ -1.08
VPS13D-211ENST00000543710 MRPS25P82663 173 aaKnown RBP8.29□□□□□ -1.08
VPS13D-211ENST00000543710 KRR1Q13601 381 aaKnown RBP8.29□□□□□ -1.08
VPS13D-211ENST00000543710 ITIH4Q14624 930 aa8.29□□□□□ -1.08
VPS13D-211ENST00000543710 GUF1Q8N442 669 aaKnown RBP8.29□□□□□ -1.08
VPS13D-211ENST00000543710 KLHL29Q96CT2 875 aa8.29□□□□□ -1.08
VPS13D-211ENST00000543710 TSPAN17Q96FV3 270 aa8.29□□□□□ -1.08
VPS13D-211ENST00000543710 DPH5Q9H2P9 285 aa8.29□□□□□ -1.08
VPS13D-211ENST00000543710 ZFP69BQ9UJL9 534 aa8.29□□□□□ -1.08
VPS13D-211ENST00000543710 PCDHA5Q9Y5H7 936 aa8.29□□□□□ -1.08
VPS13D-211ENST00000543710 IFT172Q9UG01 1749 aa8.29□□□□□ -1.08
VPS13D-211ENST00000543710 PRRG1O14668 218 aa8.29□□□□□ -1.08
VPS13D-211ENST00000543710 CTNND1O60716 968 aaKnown RBP8.29□□□□□ -1.08
VPS13D-211ENST00000543710 RTN2O75298 545 aa8.29□□□□□ -1.08
VPS13D-211ENST00000543710 EHHADHQ08426 723 aa8.29□□□□□ -1.08
VPS13D-211ENST00000543710 PLD1Q13393 1074 aa8.29□□□□□ -1.08
VPS13D-211ENST00000543710 STARD3Q14849 445 aa8.29□□□□□ -1.08
VPS13D-211ENST00000543710 IQCB1Q15051 598 aa8.29□□□□□ -1.08
VPS13D-211ENST00000543710 FAM47AQ5JRC9 791 aa8.29□□□□□ -1.08
VPS13D-211ENST00000543710 KRT80Q6KB66 452 aa8.29□□□□□ -1.08
VPS13D-211ENST00000543710 PRR5LQ6MZQ0 368 aa8.29□□□□□ -1.08
VPS13D-211ENST00000543710 ANO5Q75V66 913 aa8.29□□□□□ -1.08
VPS13D-211ENST00000543710 PARP9Q8IXQ6 854 aa8.29□□□□□ -1.08
VPS13D-211ENST00000543710 MB21D2Q8IYB1 491 aaPredicted RBP8.29□□□□□ -1.08
VPS13D-211ENST00000543710 IGFLR1Q9H665 355 aa8.29□□□□□ -1.08
VPS13D-211ENST00000543710 UBN1Q9NPG3 1134 aa8.29□□□□□ -1.08
VPS13D-211ENST00000543710 STK39Q9UEW8 545 aa8.29□□□□□ -1.08
VPS13D-211ENST00000543710 SETD1BQ9UPS6 1966 aaKnown RBP8.29□□□□□ -1.08
VPS13D-211ENST00000543710 ENTPD3O75355 529 aa8.29□□□□□ -1.08
VPS13D-211ENST00000543710 AKR1A1P14550 325 aa8.29□□□□□ -1.08
VPS13D-211ENST00000543710 MXI1P50539 228 aa8.29□□□□□ -1.08
VPS13D-211ENST00000543710 TERF2Q15554 542 aa8.29□□□□□ -1.08
VPS13D-211ENST00000543710 FBXO46Q6PJ61 603 aaPredicted RBP8.29□□□□□ -1.08
VPS13D-211ENST00000543710 TMC7Q7Z402 723 aa8.29□□□□□ -1.08
VPS13D-211ENST00000543710 C7orf25Q9BPX7 421 aa8.29□□□□□ -1.08
VPS13D-211ENST00000543710 MOSPD1Q9UJG1 213 aa8.29□□□□□ -1.08
VPS13D-211ENST00000543710 ROBO2Q9HCK4 1378 aa8.29□□□□□ -1.08
VPS13D-211ENST00000543710 NWD1Q149M9 1564 aa8.28□□□□□ -1.08
VPS13D-211ENST00000543710 POTEB3A0JP26 581 aa8.28□□□□□ -1.08
VPS13D-211ENST00000543710 CCDC78A2IDD5 438 aa8.28□□□□□ -1.08
VPS13D-211ENST00000543710 SPDYE16A6NNV3 312 aaPredicted RBP8.28□□□□□ -1.08
VPS13D-211ENST00000543710 PDXKO00764 312 aa8.28□□□□□ -1.08
VPS13D-211ENST00000543710 ZBTB5O15062 677 aa8.28□□□□□ -1.08
VPS13D-211ENST00000543710 STRNO43815 780 aa8.28□□□□□ -1.08
VPS13D-211ENST00000543710 FGBP02675 491 aa8.28□□□□□ -1.08
VPS13D-211ENST00000543710 KRT8P05787 483 aa8.28□□□□□ -1.08
VPS13D-211ENST00000543710 PNMA6AP0CW24 399 aaPredicted RBP8.28□□□□□ -1.08
VPS13D-211ENST00000543710 KIZQ2M2Z5 673 aa8.28□□□□□ -1.08
VPS13D-211ENST00000543710 SPDYE2Q495Y8 402 aa8.28□□□□□ -1.08
VPS13D-211ENST00000543710 SBK1Q52WX2 424 aa8.28□□□□□ -1.08
VPS13D-211ENST00000543710 POTEBQ6S5H4 581 aa8.28□□□□□ -1.08
VPS13D-211ENST00000543710 EEPD1Q7L9B9 569 aa8.28□□□□□ -1.08
VPS13D-211ENST00000543710 FMR1NBQ8N0W7 255 aaPredicted RBP8.28□□□□□ -1.08
VPS13D-211ENST00000543710 ATP11CQ8NB49 1132 aa8.28□□□□□ -1.08
VPS13D-211ENST00000543710 PDZD8Q8NEN9 1154 aa8.28□□□□□ -1.08
VPS13D-211ENST00000543710 MGARPQ8TDB4 240 aa8.28□□□□□ -1.08
VPS13D-211ENST00000543710 TBCKQ8TEA7 893 aa8.28□□□□□ -1.08
VPS13D-211ENST00000543710 POP5Q969H6 163 aaKnown RBP8.28□□□□□ -1.08
VPS13D-211ENST00000543710 VPS39Q96JC1 886 aa8.28□□□□□ -1.08
VPS13D-211ENST00000543710 ARHGAP9Q9BRR9 750 aa8.28□□□□□ -1.08
VPS13D-211ENST00000543710 POLE3Q9NRF9 147 aa8.28□□□□□ -1.08
VPS13D-211ENST00000543710 DBNLQ9UJU6 430 aaKnown RBP8.28□□□□□ -1.08
VPS13D-211ENST00000543710 MROH1Q8NDA8 1641 aa8.28□□□□□ -1.08
VPS13D-211ENST00000543710 DIP2BQ9P265 1576 aa8.28□□□□□ -1.08
VPS13D-211ENST00000543710 E7ENQ6 273 aa8.28□□□□□ -1.08
VPS13D-211ENST00000543710 COPEO14579 308 aa8.28□□□□□ -1.08
VPS13D-211ENST00000543710 RNASEH1O60930 286 aaKnown RBP8.28□□□□□ -1.08
VPS13D-211ENST00000543710 PHKA2P46019 1235 aa8.28□□□□□ -1.08
VPS13D-211ENST00000543710 CDR2Q01850 454 aa8.28□□□□□ -1.08
VPS13D-211ENST00000543710 KCNH2Q12809 1159 aa8.28□□□□□ -1.08
VPS13D-211ENST00000543710 RAPH1Q70E73 1250 aa8.28□□□□□ -1.08
VPS13D-211ENST00000543710 EPM2AIP1Q7L775 607 aaPredicted RBP8.28□□□□□ -1.08
VPS13D-211ENST00000543710 PPM1KQ8N3J5 372 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms