RNA–Protein interactions for RNA: ENST00000371121.4

SMARCA1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SMARCA1, Length 3,564 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1-201ENST00000371121 NINJ2Q9NZG7 142 aa12.51□□□□□ -0.41
SMARCA1-201ENST00000371121 PHTF1Q9UMS5 762 aa12.51□□□□□ -0.41
SMARCA1-201ENST00000371121 G3BP2Q9UN86 482 aaKnown RBP12.51□□□□□ -0.41
SMARCA1-201ENST00000371121 BCS1LQ9Y276 419 aa12.51□□□□□ -0.41
SMARCA1-201ENST00000371121 SPATA31A5Q5VU36 1347 aa12.51□□□□□ -0.41
SMARCA1-201ENST00000371121 SPATA31A6Q5VVP1 1343 aa12.51□□□□□ -0.41
SMARCA1-201ENST00000371121 SPATA31A7Q8IWB4 1347 aa12.51□□□□□ -0.41
SMARCA1-201ENST00000371121 TNRC6CQ9HCJ0 1690 aaKnown RBP12.5□□□□□ -0.41
SMARCA1-201ENST00000371121 POTEFA5A3E0 1075 aa12.5□□□□□ -0.41
SMARCA1-201ENST00000371121 ATP9AO75110 1047 aa12.5□□□□□ -0.41
SMARCA1-201ENST00000371121 POTEIP0CG38 1075 aa12.5□□□□□ -0.41
SMARCA1-201ENST00000371121 TAF1BQ53T94 588 aaPredicted RBP12.5□□□□□ -0.41
SMARCA1-201ENST00000371121 ZNF449Q6P9G9 518 aa12.5□□□□□ -0.41
SMARCA1-201ENST00000371121 POTEGQ6S5H5 508 aa12.5□□□□□ -0.41
SMARCA1-201ENST00000371121 POTEEQ6S8J3 1075 aa12.5□□□□□ -0.41
SMARCA1-201ENST00000371121 TIPINQ9BVW5 301 aa12.5□□□□□ -0.41
SMARCA1-201ENST00000371121 MXD3Q9BW11 206 aa12.5□□□□□ -0.41
SMARCA1-201ENST00000371121 C6orf50Q9HD87 102 aa12.5□□□□□ -0.41
SMARCA1-201ENST00000371121 STK32BQ9NY57 414 aa12.5□□□□□ -0.41
SMARCA1-201ENST00000371121 HSFX1Q9UBD0 423 aa12.5□□□□□ -0.41
SMARCA1-201ENST00000371121 STX8Q9UNK0 236 aa12.5□□□□□ -0.41
SMARCA1-201ENST00000371121 XIRP1Q702N8 1843 aaKnown RBP12.5□□□□□ -0.41
SMARCA1-201ENST00000371121 CAMTA2O94983 1202 aa12.5□□□□□ -0.41
SMARCA1-201ENST00000371121 TJP3O95049 919 aa12.5□□□□□ -0.41
SMARCA1-201ENST00000371121 TTLL1O95922 423 aa12.5□□□□□ -0.41
SMARCA1-201ENST00000371121 COMTP21964 271 aa12.5□□□□□ -0.41
SMARCA1-201ENST00000371121 MUTP22033 750 aa12.5□□□□□ -0.41
SMARCA1-201ENST00000371121 DRAP1Q14919 205 aaPredicted RBP12.5□□□□□ -0.41
SMARCA1-201ENST00000371121 WASHC2DQ5SRD0 308 aa12.5□□□□□ -0.41
SMARCA1-201ENST00000371121 TRMT10CQ7L0Y3 403 aaKnown RBP12.5□□□□□ -0.41
SMARCA1-201ENST00000371121 CYFIP1Q7L576 1253 aa12.5□□□□□ -0.41
SMARCA1-201ENST00000371121 APBB1IPQ7Z5R6 666 aaPredicted RBP12.5□□□□□ -0.41
SMARCA1-201ENST00000371121 GPBP1Q86WP2 473 aa12.5□□□□□ -0.41
SMARCA1-201ENST00000371121 KSR1Q8IVT5 923 aa12.5□□□□□ -0.41
SMARCA1-201ENST00000371121 SRRM1Q8IYB3 904 aaKnown RBP12.5□□□□□ -0.41
SMARCA1-201ENST00000371121 AGGF1Q8N302 714 aaeCLIP12.5□□□□□ -0.412e-6■□□□□ 9.2
SMARCA1-201ENST00000371121 SHKBP1Q8TBC3 707 aa12.5□□□□□ -0.41
SMARCA1-201ENST00000371121 SH3TC2Q8TF17 1288 aa12.5□□□□□ -0.41
SMARCA1-201ENST00000371121 DYDC1Q8WWB3 177 aa12.5□□□□□ -0.41
SMARCA1-201ENST00000371121 PCDHB18PQ96TA0 734 aa12.5□□□□□ -0.41
SMARCA1-201ENST00000371121 RUSC1Q9BVN2 902 aa12.5□□□□□ -0.41
SMARCA1-201ENST00000371121 NT5C3AQ9H0P0 336 aa12.5□□□□□ -0.41
SMARCA1-201ENST00000371121 GRIA2P42262 883 aa12.5□□□□□ -0.41
SMARCA1-201ENST00000371121 KNOP1Q1ED39 458 aaKnown RBP12.5□□□□□ -0.41
SMARCA1-201ENST00000371121 SNX30Q5VWJ9 437 aa12.5□□□□□ -0.41
SMARCA1-201ENST00000371121 KRT79Q5XKE5 535 aa12.5□□□□□ -0.41
SMARCA1-201ENST00000371121 FAM81AQ8TBF8 368 aa12.5□□□□□ -0.41
SMARCA1-201ENST00000371121 PTPRN2Q92932 1015 aa12.5□□□□□ -0.41
SMARCA1-201ENST00000371121 RAB3IPQ96QF0 476 aaPredicted RBP12.5□□□□□ -0.41
SMARCA1-201ENST00000371121 REEP2Q9BRK0 252 aa12.5□□□□□ -0.41
SMARCA1-201ENST00000371121 PITPNM3Q9BZ71 974 aa12.5□□□□□ -0.41
SMARCA1-201ENST00000371121 KCNK9Q9NPC2 374 aa12.5□□□□□ -0.41
SMARCA1-201ENST00000371121 CHST7Q9NS84 486 aa12.5□□□□□ -0.41
SMARCA1-201ENST00000371121 KLHL14Q9P2G3 628 aa12.5□□□□□ -0.41
SMARCA1-201ENST00000371121 LNPEPQ9UIQ6 1025 aa12.5□□□□□ -0.41
SMARCA1-201ENST00000371121 SUGT1Q9Y2Z0 365 aa12.5□□□□□ -0.41
SMARCA1-201ENST00000371121 WASF2Q9Y6W5 498 aa12.5□□□□□ -0.41
SMARCA1-201ENST00000371121 MYO3BQ8WXR4 1341 aa12.5□□□□□ -0.41
SMARCA1-201ENST00000371121 PODXLO00592 558 aa12.49□□□□□ -0.41
SMARCA1-201ENST00000371121 CLIC2O15247 247 aa12.49□□□□□ -0.41
SMARCA1-201ENST00000371121 SPATA31C1P0DKV0 1188 aa12.49□□□□□ -0.41
SMARCA1-201ENST00000371121 XRCC5P13010 732 aaKnown RBP12.49□□□□□ -0.41
SMARCA1-201ENST00000371121 GBP1P32455 592 aa12.49□□□□□ -0.41
SMARCA1-201ENST00000371121 OCRLQ01968 901 aa12.49□□□□□ -0.41
SMARCA1-201ENST00000371121 TCEAL1Q15170 157 aa12.49□□□□□ -0.41
SMARCA1-201ENST00000371121 CCDC142Q17RM4 750 aa12.49□□□□□ -0.41
SMARCA1-201ENST00000371121 ANKS1BQ7Z6G8 1248 aa12.49□□□□□ -0.41
SMARCA1-201ENST00000371121 TRIM74Q86UV6 250 aa12.49□□□□□ -0.41
SMARCA1-201ENST00000371121 TRIM73Q86UV7 250 aa12.49□□□□□ -0.41
SMARCA1-201ENST00000371121 CELF1Q92879 486 aaKnown RBP12.49□□□□□ -0.41
SMARCA1-201ENST00000371121 SLCO2A1Q92959 643 aa12.49□□□□□ -0.41
SMARCA1-201ENST00000371121 CRNKL1Q9BZJ0 848 aaKnown RBP12.49□□□□□ -0.41
SMARCA1-201ENST00000371121 ACP6Q9NPH0 428 aa12.49□□□□□ -0.41
SMARCA1-201ENST00000371121 TXLNGQ9NUQ3 528 aa12.49□□□□□ -0.41
SMARCA1-201ENST00000371121 PHF24Q9UPV7 400 aa12.49□□□□□ -0.41
SMARCA1-201ENST00000371121 POLE2P56282 527 aa12.49□□□□□ -0.41
SMARCA1-201ENST00000371121 CNPY1Q3B7I2 92 aa12.49□□□□□ -0.41
SMARCA1-201ENST00000371121 C11orf63Q6NUN7 778 aa12.49□□□□□ -0.41
SMARCA1-201ENST00000371121 SFR1Q86XK3 245 aa12.49□□□□□ -0.41
SMARCA1-201ENST00000371121 SLC13A5Q86YT5 568 aaPredicted RBP12.49□□□□□ -0.41
SMARCA1-201ENST00000371121 CDK5RAP3Q96JB5 506 aa12.49□□□□□ -0.41
SMARCA1-201ENST00000371121 KCNQ5Q9NR82 932 aa12.49□□□□□ -0.41
SMARCA1-201ENST00000371121 TFCP2L1Q9NZI6 479 aa12.49□□□□□ -0.41
SMARCA1-201ENST00000371121 SYNGAP1Q96PV0 1343 aa12.49□□□□□ -0.41
SMARCA1-201ENST00000371121 GOLGA6L10A0A0M3HER8 536 aa12.49□□□□□ -0.41
SMARCA1-201ENST00000371121 CETN3O15182 167 aa12.49□□□□□ -0.41
SMARCA1-201ENST00000371121 NVLO15381 856 aaKnown RBP12.49□□□□□ -0.41
SMARCA1-201ENST00000371121 EDF1O60869 148 aaKnown RBP12.49□□□□□ -0.41
SMARCA1-201ENST00000371121 GNA11P29992 359 aa12.49□□□□□ -0.41
SMARCA1-201ENST00000371121 IL6STP40189 918 aaPredicted RBP12.49□□□□□ -0.41
SMARCA1-201ENST00000371121 SCNN1BP51168 640 aa12.49□□□□□ -0.41
SMARCA1-201ENST00000371121 CACNA2D1P54289 1103 aa12.49□□□□□ -0.41
SMARCA1-201ENST00000371121 MYBPC3Q14896 1274 aa12.49□□□□□ -0.41
SMARCA1-201ENST00000371121 SLC1A5Q15758 541 aa12.49□□□□□ -0.41
SMARCA1-201ENST00000371121 RGS9BPQ6ZS82 235 aa12.49□□□□□ -0.41
SMARCA1-201ENST00000371121 ATG4AQ8WYN0 398 aa12.49□□□□□ -0.41
SMARCA1-201ENST00000371121 BICD1Q96G01 975 aa12.49□□□□□ -0.41
SMARCA1-201ENST00000371121 TRAPPC9Q96Q05 1148 aa12.49□□□□□ -0.41
SMARCA1-201ENST00000371121 LRRC19Q9H756 370 aa12.49□□□□□ -0.41
SMARCA1-201ENST00000371121 DDX43Q9NXZ2 648 aaKnown RBP12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms