RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 ST6GALNAC4Q9H4F1 302 aa22.32■■□□□ 1.16
PTCD3-220ENST00000627371 OLFML3Q9NRN5 406 aa22.32■■□□□ 1.16
PTCD3-220ENST00000627371 RNF19AQ9NV58 838 aa22.32■■□□□ 1.16
PTCD3-220ENST00000627371 PANK4Q9NVE7 773 aa22.32■■□□□ 1.16
PTCD3-220ENST00000627371 CHD7Q9P2D1 2997 aa22.32■■□□□ 1.16
PTCD3-220ENST00000627371 USP20Q9Y2K6 914 aa22.32■■□□□ 1.16
PTCD3-220ENST00000627371 LINC01553A4QN01 128 aa22.31■■□□□ 1.16
PTCD3-220ENST00000627371 ARHGEF15O94989 841 aa22.31■■□□□ 1.16
PTCD3-220ENST00000627371 FGFR1P11362 822 aa22.31■■□□□ 1.16
PTCD3-220ENST00000627371 NMT1P30419 496 aaKnown RBP22.31■■□□□ 1.16
PTCD3-220ENST00000627371 AFMP43652 599 aa22.31■■□□□ 1.16
PTCD3-220ENST00000627371 ASIC1P78348 528 aa22.31■■□□□ 1.16
PTCD3-220ENST00000627371 ATF7IP2Q5U623 682 aa22.31■■□□□ 1.16
PTCD3-220ENST00000627371 MRPL10Q7Z7H8 261 aaKnown RBP22.31■■□□□ 1.16
PTCD3-220ENST00000627371 CMTR2Q8IYT2 770 aaKnown RBP22.31■■□□□ 1.16
PTCD3-220ENST00000627371 PGBD4Q96DM1 585 aa22.31■■□□□ 1.16
PTCD3-220ENST00000627371 PAGE5Q96GU1 130 aa22.31■■□□□ 1.16
PTCD3-220ENST00000627371 TRIM6Q9C030 488 aaPredicted RBP22.31■■□□□ 1.16
PTCD3-220ENST00000627371 IPPQ9Y573 584 aa22.31■■□□□ 1.16
PTCD3-220ENST00000627371 TDRD15B5MCY1 1934 aaKnown RBP22.31■■□□□ 1.16
PTCD3-220ENST00000627371 ZNF202O95125 648 aa22.3■■□□□ 1.16
PTCD3-220ENST00000627371 NPTXRO95502 500 aa22.3■■□□□ 1.16
PTCD3-220ENST00000627371 GATMP50440 423 aa22.3■■□□□ 1.16
PTCD3-220ENST00000627371 GTF2BQ00403 316 aa22.3■■□□□ 1.16
PTCD3-220ENST00000627371 TAP1Q03518 808 aa22.3■■□□□ 1.16
PTCD3-220ENST00000627371 COASYQ13057 564 aa22.3■■□□□ 1.16
PTCD3-220ENST00000627371 HERC4Q5GLZ8 1057 aaPredicted RBP22.3■■□□□ 1.16
PTCD3-220ENST00000627371 KRBA2Q6ZNG9 492 aa22.3■■□□□ 1.16
PTCD3-220ENST00000627371 ZNF720Q7Z2F6 126 aa22.3■■□□□ 1.16
PTCD3-220ENST00000627371 GRAMD1CQ8IYS0 662 aa22.3■■□□□ 1.16
PTCD3-220ENST00000627371 FMR1NBQ8N0W7 255 aaPredicted RBP22.3■■□□□ 1.16
PTCD3-220ENST00000627371 SMG8Q8ND04 991 aaKnown RBP22.3■■□□□ 1.16
PTCD3-220ENST00000627371 ACO2Q99798 780 aaKnown RBP22.3■■□□□ 1.16
PTCD3-220ENST00000627371 ADPGKQ9BRR6 497 aa22.3■■□□□ 1.16
PTCD3-220ENST00000627371 TARS2Q9BW92 718 aaKnown RBP22.3■■□□□ 1.16
PTCD3-220ENST00000627371 BLZF1Q9H2G9 400 aa22.3■■□□□ 1.16
PTCD3-220ENST00000627371 TTYH1Q9H313 450 aaPredicted RBP22.3■■□□□ 1.16
PTCD3-220ENST00000627371 ZNF576Q9H609 170 aa22.3■■□□□ 1.16
PTCD3-220ENST00000627371 MRPL44Q9H9J2 332 aaKnown RBP22.3■■□□□ 1.16
PTCD3-220ENST00000627371 TBX20Q9UMR3 447 aa22.3■■□□□ 1.16
PTCD3-220ENST00000627371 TNFSF13BQ9Y275 285 aa22.3■■□□□ 1.16
PTCD3-220ENST00000627371 CITO14578 2027 aa22.3■■□□□ 1.16
PTCD3-220ENST00000627371 TRIP11Q15643 1979 aa22.29■■□□□ 1.16
PTCD3-220ENST00000627371 MYL1P05976 194 aa22.29■■□□□ 1.16
PTCD3-220ENST00000627371 CASP1P29466 404 aa22.29■■□□□ 1.16
PTCD3-220ENST00000627371 CUL4BQ13620 913 aa22.29■■□□□ 1.16
PTCD3-220ENST00000627371 BTG3Q14201 252 aaPredicted RBP22.29■■□□□ 1.16
PTCD3-220ENST00000627371 CLLU1OSQ5K130 101 aa22.29■■□□□ 1.16
PTCD3-220ENST00000627371 EEF1DP3Q658K8 133 aa22.29■■□□□ 1.16
PTCD3-220ENST00000627371 CLEC17AQ6ZS10 378 aa22.29■■□□□ 1.16
PTCD3-220ENST00000627371 UNC13DQ70J99 1090 aa22.29■■□□□ 1.16
PTCD3-220ENST00000627371 ABI1Q8IZP0 508 aa22.29■■□□□ 1.16
PTCD3-220ENST00000627371 RSPH1Q8WYR4 309 aa22.29■■□□□ 1.16
PTCD3-220ENST00000627371 LPPQ93052 612 aa22.29■■□□□ 1.16
PTCD3-220ENST00000627371 TMEM117Q9H0C3 514 aa22.29■■□□□ 1.16
PTCD3-220ENST00000627371 COL4A4P53420 1690 aaPredicted RBP22.29■■□□□ 1.16
PTCD3-220ENST00000627371 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP22.28■■□□□ 1.16
PTCD3-220ENST00000627371 TBKBP1A7MCY6 615 aa22.28■■□□□ 1.16
PTCD3-220ENST00000627371 MEIS3P2A8K0S8 358 aa22.28■■□□□ 1.16
PTCD3-220ENST00000627371 PPP1R37O75864 691 aa22.28■■□□□ 1.16
PTCD3-220ENST00000627371 FAM160A1Q05DH4 1040 aa22.28■■□□□ 1.16
PTCD3-220ENST00000627371 SNW1Q13573 536 aaKnown RBP22.28■■□□□ 1.16
PTCD3-220ENST00000627371 DCAF4L1Q3SXM0 396 aa22.28■■□□□ 1.16
PTCD3-220ENST00000627371 PAN2Q504Q3 1202 aaKnown RBP22.28■■□□□ 1.16
PTCD3-220ENST00000627371 ZPBP2Q6X784 338 aa22.28■■□□□ 1.16
PTCD3-220ENST00000627371 AGMOQ6ZNB7 445 aa22.28■■□□□ 1.16
PTCD3-220ENST00000627371 MAP4K3Q8IVH8 894 aa22.28■■□□□ 1.16
PTCD3-220ENST00000627371 HACE1Q8IYU2 909 aa22.28■■□□□ 1.16
PTCD3-220ENST00000627371 FIBCD1Q8N539 461 aa22.28■■□□□ 1.16
PTCD3-220ENST00000627371 ENGASEQ8NFI3 743 aa22.28■■□□□ 1.16
PTCD3-220ENST00000627371 HVCN1Q96D96 273 aa22.28■■□□□ 1.16
PTCD3-220ENST00000627371 CASD1Q96PB1 797 aa22.28■■□□□ 1.16
PTCD3-220ENST00000627371 NXF3Q9H4D5 531 aaKnown RBP22.28■■□□□ 1.16
PTCD3-220ENST00000627371 PTPRHQ9HD43 1115 aa22.28■■□□□ 1.16
PTCD3-220ENST00000627371 TBC1D7Q9P0N9 293 aa22.28■■□□□ 1.16
PTCD3-220ENST00000627371 PVALEFA0A1B0GWK0 134 aa22.27■■□□□ 1.16
PTCD3-220ENST00000627371 GTPBP6O43824 516 aaPredicted RBP22.27■■□□□ 1.16
PTCD3-220ENST00000627371 GADD45BO75293 160 aaPredicted RBP22.27■■□□□ 1.16
PTCD3-220ENST00000627371 PIGRP01833 764 aa22.27■■□□□ 1.16
PTCD3-220ENST00000627371 ITGA4P13612 1032 aa22.27■■□□□ 1.16
PTCD3-220ENST00000627371 PROZP22891 400 aa22.27■■□□□ 1.16
PTCD3-220ENST00000627371 ZC2HC1CQ53FD0 456 aaPredicted RBP22.27■■□□□ 1.16
PTCD3-220ENST00000627371 GLB1LQ6UWU2 654 aa22.27■■□□□ 1.16
PTCD3-220ENST00000627371 APBB1IPQ7Z5R6 666 aaPredicted RBP22.27■■□□□ 1.16
PTCD3-220ENST00000627371 HELQQ8TDG4 1101 aa22.27■■□□□ 1.16
PTCD3-220ENST00000627371 TGS1Q96RS0 853 aaKnown RBP22.27■■□□□ 1.16
PTCD3-220ENST00000627371 STRA6Q9BX79 667 aa22.27■■□□□ 1.16
PTCD3-220ENST00000627371 SEMA6BQ9H3T3 888 aa22.27■■□□□ 1.16
PTCD3-220ENST00000627371 RSAD1Q9HA92 442 aa22.27■■□□□ 1.16
PTCD3-220ENST00000627371 UBN1Q9NPG3 1134 aa22.27■■□□□ 1.16
PTCD3-220ENST00000627371 HES2Q9Y543 173 aa22.27■■□□□ 1.16
PTCD3-220ENST00000627371 ABLIM1O14639 778 aa22.26■■□□□ 1.15
PTCD3-220ENST00000627371 TOM1L1O75674 476 aa22.26■■□□□ 1.15
PTCD3-220ENST00000627371 GCNT3O95395 438 aa22.26■■□□□ 1.15
PTCD3-220ENST00000627371 LINC00271P0C7V0 271 aa22.26■■□□□ 1.15
PTCD3-220ENST00000627371 CASP5P51878 434 aa22.26■■□□□ 1.15
PTCD3-220ENST00000627371 ERVK-21P61565 698 aa22.26■■□□□ 1.15
PTCD3-220ENST00000627371 EHHADHQ08426 723 aa22.26■■□□□ 1.15
PTCD3-220ENST00000627371 ALCAMQ13740 583 aa22.26■■□□□ 1.15
PTCD3-220ENST00000627371 ZNF568Q3ZCX4 644 aa22.26■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms