RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 WLSQ5T9L3 541 aa14.74□□□□□ -0.05
CCDC88A-201ENST00000263630 C8orf58Q8NAV2 365 aa14.74□□□□□ -0.05
CCDC88A-201ENST00000263630 CENPXA8MT69 81 aa14.74□□□□□ -0.05
CCDC88A-201ENST00000263630 NDUFA8P51970 172 aa14.74□□□□□ -0.05
CCDC88A-201ENST00000263630 SLC7A5Q01650 507 aa14.74□□□□□ -0.05
CCDC88A-201ENST00000263630 GIMAP8Q8ND71 665 aaPredicted RBP14.74□□□□□ -0.05
CCDC88A-201ENST00000263630 CEP170P1Q96L14 293 aa14.74□□□□□ -0.05
CCDC88A-201ENST00000263630 HINFPQ9BQA5 517 aa14.74□□□□□ -0.05
CCDC88A-201ENST00000263630 ETNK1Q9HBU6 452 aa14.74□□□□□ -0.05
CCDC88A-201ENST00000263630 AFF4Q9UHB7 1163 aaKnown RBP14.74□□□□□ -0.05
CCDC88A-201ENST00000263630 hCG_1642624A0A1W2PR95 340 aa14.73□□□□□ -0.05
CCDC88A-201ENST00000263630 STRNO43815 780 aa14.73□□□□□ -0.05
CCDC88A-201ENST00000263630 PSAPP07602 524 aa14.73□□□□□ -0.05
CCDC88A-201ENST00000263630 SYTL3Q4VX76 610 aa14.73□□□□□ -0.05
CCDC88A-201ENST00000263630 ANKRD13CQ8N6S4 541 aa14.73□□□□□ -0.05
CCDC88A-201ENST00000263630 ATP11CQ8NB49 1132 aa14.73□□□□□ -0.05
CCDC88A-201ENST00000263630 QKIQ96PU8 341 aaKnown RBP eCLIP14.73□□□□□ -0.051e-7■■■■■ 38.2
CCDC88A-201ENST00000263630 KIFC1Q9BW19 673 aa14.73□□□□□ -0.05
CCDC88A-201ENST00000263630 UBA6A0AVT1 1052 aaPredicted RBP14.73□□□□□ -0.05
CCDC88A-201ENST00000263630 MEFVO15553 781 aaPredicted RBP14.73□□□□□ -0.05
CCDC88A-201ENST00000263630 TLR2O60603 784 aa14.73□□□□□ -0.05
CCDC88A-201ENST00000263630 RUBCNQ92622 972 aa14.73□□□□□ -0.05
CCDC88A-201ENST00000263630 Q3C1V9 767 aa14.73□□□□□ -0.05
CCDC88A-201ENST00000263630 EXOSC4Q9NPD3 245 aaKnown RBP14.73□□□□□ -0.05
CCDC88A-201ENST00000263630 NGRNQ9NPE2 291 aaKnown RBP14.73□□□□□ -0.05
CCDC88A-201ENST00000263630 TNPO2O14787 897 aaKnown RBP14.73□□□□□ -0.05
CCDC88A-201ENST00000263630 TNFAIP2Q03169 654 aa14.73□□□□□ -0.05
CCDC88A-201ENST00000263630 FAM47AQ5JRC9 791 aa14.73□□□□□ -0.05
CCDC88A-201ENST00000263630 CDH24Q86UP0 819 aa14.73□□□□□ -0.05
CCDC88A-201ENST00000263630 PDZK1P1A8MUH7 402 aa14.73□□□□□ -0.05
CCDC88A-201ENST00000263630 SEC31AO94979 1220 aaKnown RBP14.73□□□□□ -0.05
CCDC88A-201ENST00000263630 FGGP02679 453 aa14.73□□□□□ -0.05
CCDC88A-201ENST00000263630 DDHD1Q8NEL9 900 aa14.73□□□□□ -0.05
CCDC88A-201ENST00000263630 ASAP3Q8TDY4 903 aa14.73□□□□□ -0.05
CCDC88A-201ENST00000263630 GGPS1O95749 300 aa14.73□□□□□ -0.05
CCDC88A-201ENST00000263630 HIST1H2AGP0C0S8 130 aaPredicted RBP14.73□□□□□ -0.05
CCDC88A-201ENST00000263630 TRIM49P0CI25 452 aa14.73□□□□□ -0.05
CCDC88A-201ENST00000263630 TRIM49CP0CI26 452 aa14.73□□□□□ -0.05
CCDC88A-201ENST00000263630 HIST1H2ADP20671 130 aa14.73□□□□□ -0.05
CCDC88A-201ENST00000263630 HIST1H2AHQ96KK5 128 aa14.73□□□□□ -0.05
CCDC88A-201ENST00000263630 HIST1H2AJQ99878 128 aa14.73□□□□□ -0.05
CCDC88A-201ENST00000263630 H2AFJQ9BTM1 129 aa14.73□□□□□ -0.05
CCDC88A-201ENST00000263630 ZBED2Q9BTP6 218 aa14.73□□□□□ -0.05
CCDC88A-201ENST00000263630 DCAF4L1Q3SXM0 396 aa14.73□□□□□ -0.05
CCDC88A-201ENST00000263630 KCNV2Q8TDN2 545 aa14.73□□□□□ -0.05
CCDC88A-201ENST00000263630 PRRG3Q9BZD7 231 aa14.73□□□□□ -0.05
CCDC88A-201ENST00000263630 CCNL1Q9UK58 526 aaPredicted RBP14.73□□□□□ -0.05
CCDC88A-201ENST00000263630 MAP3K1Q13233 1512 aa14.73□□□□□ -0.05
CCDC88A-201ENST00000263630 PSMD3O43242 534 aa14.73□□□□□ -0.05
CCDC88A-201ENST00000263630 FTCDO95954 541 aa14.73□□□□□ -0.05
CCDC88A-201ENST00000263630 ZBED6P86452 979 aa14.73□□□□□ -0.05
CCDC88A-201ENST00000263630 RNF135Q8IUD6 432 aa14.73□□□□□ -0.05
CCDC88A-201ENST00000263630 FANCBQ8NB91 859 aa14.73□□□□□ -0.05
CCDC88A-201ENST00000263630 AP1M1Q9BXS5 423 aa14.73□□□□□ -0.05
CCDC88A-201ENST00000263630 HEY1Q9Y5J3 304 aa14.73□□□□□ -0.05
CCDC88A-201ENST00000263630 CUL7Q14999 1698 aa14.72□□□□□ -0.05
CCDC88A-201ENST00000263630 SMIM31A0A1B0GVY4 71 aa14.72□□□□□ -0.05
CCDC88A-201ENST00000263630 CHRNA3P32297 505 aa14.72□□□□□ -0.05
CCDC88A-201ENST00000263630 CYP4A11Q02928 519 aa14.72□□□□□ -0.05
CCDC88A-201ENST00000263630 ACCSLQ4AC99 568 aa14.72□□□□□ -0.05
CCDC88A-201ENST00000263630 FAM47EQ6ZV65 393 aa14.72□□□□□ -0.05
CCDC88A-201ENST00000263630 ABCB5Q2M3G0 1257 aa14.72□□□□□ -0.05
CCDC88A-201ENST00000263630 SLC13A1Q9BZW2 595 aa14.72□□□□□ -0.05
CCDC88A-201ENST00000263630 ZBTB40Q9NUA8 1239 aa14.72□□□□□ -0.05
CCDC88A-201ENST00000263630 STAP1Q9ULZ2 295 aa14.72□□□□□ -0.05
CCDC88A-201ENST00000263630 SPATA2Q9UM82 520 aa14.72□□□□□ -0.05
CCDC88A-201ENST00000263630 TRIM24O15164 1050 aa14.72□□□□□ -0.05
CCDC88A-201ENST00000263630 JAK2O60674 1132 aa14.72□□□□□ -0.05
CCDC88A-201ENST00000263630 MICU2Q8IYU8 434 aa14.72□□□□□ -0.05
CCDC88A-201ENST00000263630 AFG1LQ8WV93 481 aa14.72□□□□□ -0.05
CCDC88A-201ENST00000263630 TINF2Q9BSI4 451 aa14.72□□□□□ -0.05
CCDC88A-201ENST00000263630 KIAA1586Q9HCI6 787 aa14.72□□□□□ -0.05
CCDC88A-201ENST00000263630 ATP10DQ9P241 1426 aa14.72□□□□□ -0.05
CCDC88A-201ENST00000263630 PSMC3P17980 439 aa14.72□□□□□ -0.05
CCDC88A-201ENST00000263630 CD58P19256 250 aa14.72□□□□□ -0.05
CCDC88A-201ENST00000263630 TSEN34Q9BSV6 310 aaKnown RBP14.72□□□□□ -0.05
CCDC88A-201ENST00000263630 USP44Q9H0E7 712 aa14.72□□□□□ -0.05
CCDC88A-201ENST00000263630 GALNT8Q9NY28 637 aa14.72□□□□□ -0.05
CCDC88A-201ENST00000263630 FKBP9O95302 570 aa14.72□□□□□ -0.05
CCDC88A-201ENST00000263630 JAK1P23458 1154 aa14.72□□□□□ -0.05
CCDC88A-201ENST00000263630 PURAQ00577 322 aaKnown RBP14.72□□□□□ -0.05
CCDC88A-201ENST00000263630 TAP1Q03518 808 aa14.72□□□□□ -0.05
CCDC88A-201ENST00000263630 SLC25A24Q6NUK1 477 aa14.72□□□□□ -0.05
CCDC88A-201ENST00000263630 FKBP9P1Q75LS8 142 aa14.72□□□□□ -0.05
CCDC88A-201ENST00000263630 TAS2R42Q7RTR8 314 aa14.72□□□□□ -0.05
CCDC88A-201ENST00000263630 FAM47E-STBD1D6RA91 191 aa14.72□□□□□ -0.05
CCDC88A-201ENST00000263630 KLHL12Q53G59 568 aa14.72□□□□□ -0.05
CCDC88A-201ENST00000263630 OMA1Q96E52 524 aa14.72□□□□□ -0.05
CCDC88A-201ENST00000263630 ANAPC7Q9UJX3 599 aa14.72□□□□□ -0.05
CCDC88A-201ENST00000263630 DYTNA2CJ06 578 aa14.72□□□□□ -0.05
CCDC88A-201ENST00000263630 KCNK16Q96T55 309 aa14.72□□□□□ -0.05
CCDC88A-201ENST00000263630 FAM167BQ9BTA0 163 aa14.72□□□□□ -0.05
CCDC88A-201ENST00000263630 TOPORSQ9NS56 1045 aaPredicted RBP14.72□□□□□ -0.05
CCDC88A-201ENST00000263630 KLC4Q9NSK0 619 aa14.72□□□□□ -0.05
CCDC88A-201ENST00000263630 NDUFA10O95299 355 aa14.71□□□□□ -0.05
CCDC88A-201ENST00000263630 CAPN1P07384 714 aa14.71□□□□□ -0.05
CCDC88A-201ENST00000263630 ANO4Q32M45 955 aa14.71□□□□□ -0.05
CCDC88A-201ENST00000263630 ARMC3Q5W041 872 aa14.71□□□□□ -0.05
CCDC88A-201ENST00000263630 ZBED8Q8IZ13 594 aa14.71□□□□□ -0.05
CCDC88A-201ENST00000263630 RAPGEF3O95398 923 aa14.71□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 117.8 ms