RNA–Protein interactions for RNA: ENST00000546298.5

YBX3-218, Transcript of Y-box binding protein 3, human

TSL 4

Gene YBX3, Length 564 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-218	ENST00000546298	CD320	Q9NPF0	282 aa		10.44	□□□□□ -0.74
YBX3-218	ENST00000546298	ENTPD7	Q9NQZ7	604 aa		10.44	□□□□□ -0.74
YBX3-218	ENST00000546298	SH2B1	Q9NRF2	756 aa	Predicted RBP	10.44	□□□□□ -0.74
YBX3-218	ENST00000546298	FAM105A	Q9NUU6	356 aa		10.44	□□□□□ -0.74
YBX3-218	ENST00000546298	KANSL3	Q9P2N6	904 aa		10.44	□□□□□ -0.74
YBX3-218	ENST00000546298	WRAP73	Q9P2S5	460 aa	Predicted RBP	10.44	□□□□□ -0.74
YBX3-218	ENST00000546298	HCST	Q9UBK5	93 aa		10.44	□□□□□ -0.74
YBX3-218	ENST00000546298	NCOR1	O75376	2440 aa		10.43	□□□□□ -0.74
YBX3-218	ENST00000546298	SI	P14410	1827 aa		10.43	□□□□□ -0.74
YBX3-218	ENST00000546298	C19orf67	A6NJJ6	358 aa		10.43	□□□□□ -0.74
YBX3-218	ENST00000546298	LINC01565	O15544	149 aa		10.43	□□□□□ -0.74
YBX3-218	ENST00000546298	GPR37L1	O60883	481 aa		10.43	□□□□□ -0.74
YBX3-218	ENST00000546298	TBX10	O75333	385 aa		10.43	□□□□□ -0.74
YBX3-218	ENST00000546298	ERLIN2	O94905	339 aa		10.43	□□□□□ -0.74
YBX3-218	ENST00000546298	EYA4	O95677	639 aa		10.43	□□□□□ -0.74
YBX3-218	ENST00000546298	ATF7	P17544	494 aa	Predicted RBP	10.43	□□□□□ -0.74
YBX3-218	ENST00000546298	ATP2B1	P20020	1258 aa		10.43	□□□□□ -0.74
YBX3-218	ENST00000546298	RBM25	P49756	843 aa	Known RBP	10.43	□□□□□ -0.74
YBX3-218	ENST00000546298	RNASEL	Q05823	741 aa	Known RBP	10.43	□□□□□ -0.74
YBX3-218	ENST00000546298	ZP2	Q05996	745 aa		10.43	□□□□□ -0.74
YBX3-218	ENST00000546298	POU5F1B	Q06416	359 aa		10.43	□□□□□ -0.74
YBX3-218	ENST00000546298	GNL2	Q13823	731 aa	Known RBP	10.43	□□□□□ -0.74
YBX3-218	ENST00000546298	NOMO2	Q5JPE7	1267 aa		10.43	□□□□□ -0.74
YBX3-218	ENST00000546298	SLC39A11	Q8N1S5	342 aa		10.43	□□□□□ -0.74
YBX3-218	ENST00000546298	ZNF579	Q8NAF0	562 aa	Known RBP	10.43	□□□□□ -0.74
YBX3-218	ENST00000546298	FAM184A	Q8NB25	1140 aa		10.43	□□□□□ -0.74
YBX3-218	ENST00000546298	TMEM87A	Q8NBN3	555 aa		10.43	□□□□□ -0.74
YBX3-218	ENST00000546298	ERMN	Q8TAM6	284 aa		10.43	□□□□□ -0.74
YBX3-218	ENST00000546298	URGCP	Q8TCY9	931 aa		10.43	□□□□□ -0.74
YBX3-218	ENST00000546298	CCDC51	Q96ER9	411 aa		10.43	□□□□□ -0.74
YBX3-218	ENST00000546298	TMEM169	Q96HH4	297 aa		10.43	□□□□□ -0.74
YBX3-218	ENST00000546298	MSLNL	Q96KJ4	702 aa		10.43	□□□□□ -0.74
YBX3-218	ENST00000546298	MTMR9	Q96QG7	549 aa		10.43	□□□□□ -0.74
YBX3-218	ENST00000546298	FOXP1	Q9H334	677 aa	Predicted RBP	10.43	□□□□□ -0.74
YBX3-218	ENST00000546298	AGPAT5	Q9NUQ2	364 aa		10.43	□□□□□ -0.74
YBX3-218	ENST00000546298	CLEC1B	Q9P126	229 aa		10.43	□□□□□ -0.74
YBX3-218	ENST00000546298	PCDHB2	Q9Y5E7	798 aa		10.43	□□□□□ -0.74
YBX3-218	ENST00000546298	CNTNAP2	Q9UHC6	1331 aa		10.42	□□□□□ -0.74
YBX3-218	ENST00000546298	COL4A4	P53420	1690 aa	Predicted RBP	10.42	□□□□□ -0.74
YBX3-218	ENST00000546298	PER2	O15055	1255 aa		10.42	□□□□□ -0.74
YBX3-218	ENST00000546298	DCX	O43602	365 aa		10.42	□□□□□ -0.74
YBX3-218	ENST00000546298	AXL	P30530	894 aa		10.42	□□□□□ -0.74
YBX3-218	ENST00000546298	MCM7	P33993	719 aa		10.42	□□□□□ -0.74
YBX3-218	ENST00000546298	TRAPPC10	P48553	1259 aa		10.42	□□□□□ -0.74
YBX3-218	ENST00000546298	BCAR1	P56945	870 aa		10.42	□□□□□ -0.74
YBX3-218	ENST00000546298	PTEN	P60484	403 aa		10.42	□□□□□ -0.74
YBX3-218	ENST00000546298	GUCY1B3	Q02153	619 aa		10.42	□□□□□ -0.74
YBX3-218	ENST00000546298	ST3GAL1	Q11201	340 aa		10.42	□□□□□ -0.74
YBX3-218	ENST00000546298	GIT2	Q14161	759 aa		10.42	□□□□□ -0.74
YBX3-218	ENST00000546298	SMC1A	Q14683	1233 aa	Known RBP	10.42	□□□□□ -0.74
YBX3-218	ENST00000546298	PLPP4	Q5VZY2	271 aa		10.42	□□□□□ -0.74
YBX3-218	ENST00000546298	TMEM184A	Q6ZMB5	413 aa		10.42	□□□□□ -0.74
YBX3-218	ENST00000546298	MRPL10	Q7Z7H8	261 aa	Known RBP	10.42	□□□□□ -0.74
YBX3-218	ENST00000546298	IFNLR1	Q8IU57	520 aa	Predicted RBP	10.42	□□□□□ -0.74
YBX3-218	ENST00000546298	SMRP1	Q8NCR6	262 aa		10.42	□□□□□ -0.74
YBX3-218	ENST00000546298	FBXO18	Q8NFZ0	1043 aa		10.42	□□□□□ -0.74
YBX3-218	ENST00000546298	NACC1	Q96RE7	527 aa		10.42	□□□□□ -0.74
YBX3-218	ENST00000546298	LRFN3	Q9BTN0	628 aa		10.42	□□□□□ -0.74
YBX3-218	ENST00000546298	TUFT1	Q9NNX1	390 aa		10.42	□□□□□ -0.74
YBX3-218	ENST00000546298	UBN1	Q9NPG3	1134 aa		10.42	□□□□□ -0.74
YBX3-218	ENST00000546298	BMP2K	Q9NSY1	1161 aa	Predicted RBP	10.42	□□□□□ -0.74
YBX3-218	ENST00000546298	STK39	Q9UEW8	545 aa		10.42	□□□□□ -0.74
YBX3-218	ENST00000546298	BARX2	Q9UMQ3	279 aa	Predicted RBP	10.42	□□□□□ -0.74
YBX3-218	ENST00000546298	NOL7	Q9UMY1	257 aa	Known RBP	10.42	□□□□□ -0.74
YBX3-218	ENST00000546298	INPP5F	Q9Y2H2	1132 aa		10.42	□□□□□ -0.74
YBX3-218	ENST00000546298	KIF3A	Q9Y496	699 aa		10.42	□□□□□ -0.74
YBX3-218	ENST00000546298	PCDHGC5	Q9Y5F6	944 aa		10.42	□□□□□ -0.74
YBX3-218	ENST00000546298	CHD9	Q3L8U1	2897 aa		10.41	□□□□□ -0.74
YBX3-218	ENST00000546298	INO80B-WBP1	J3KQ70	363 aa		10.41	□□□□□ -0.74
YBX3-218	ENST00000546298	ZBTB39	O15060	712 aa		10.41	□□□□□ -0.74
YBX3-218	ENST00000546298	ZC3H11A	O75152	810 aa	Known RBP eCLIP	10.41	□□□□□ -0.74
YBX3-218	ENST00000546298	OFD1	O75665	1012 aa		10.41	□□□□□ -0.74
YBX3-218	ENST00000546298	OR52Z1	P0C646	297 aa		10.41	□□□□□ -0.74
YBX3-218	ENST00000546298	HOXB8	P17481	243 aa	Predicted RBP	10.41	□□□□□ -0.74
YBX3-218	ENST00000546298	HOXA11	P31270	313 aa	Predicted RBP	10.41	□□□□□ -0.74
YBX3-218	ENST00000546298	PBX3	P40426	434 aa		10.41	□□□□□ -0.74
YBX3-218	ENST00000546298	RARRES1	P49788	294 aa		10.41	□□□□□ -0.74
YBX3-218	ENST00000546298	ZNF174	Q15697	407 aa		10.41	□□□□□ -0.74
YBX3-218	ENST00000546298	LONRF3	Q496Y0	759 aa		10.41	□□□□□ -0.74
YBX3-218	ENST00000546298	NOTUM	Q6P988	496 aa		10.41	□□□□□ -0.74
YBX3-218	ENST00000546298	DDX53	Q86TM3	631 aa	Known RBP	10.41	□□□□□ -0.74
YBX3-218	ENST00000546298	HACE1	Q8IYU2	909 aa		10.41	□□□□□ -0.74
YBX3-218	ENST00000546298	MRPL43	Q8N983	215 aa	Known RBP	10.41	□□□□□ -0.74
YBX3-218	ENST00000546298	CASP10	Q92851	521 aa		10.41	□□□□□ -0.74
YBX3-218	ENST00000546298	LPP	Q93052	612 aa		10.41	□□□□□ -0.74
YBX3-218	ENST00000546298	FAM193B	Q96PV7	902 aa	Predicted RBP	10.41	□□□□□ -0.74
YBX3-218	ENST00000546298	POLR3C	Q9BUI4	534 aa	Predicted RBP	10.41	□□□□□ -0.74
YBX3-218	ENST00000546298	TMEM60	Q9H2L4	133 aa		10.41	□□□□□ -0.74
YBX3-218	ENST00000546298	MINDY3	Q9H8M7	445 aa		10.41	□□□□□ -0.74
YBX3-218	ENST00000546298	RSAD1	Q9HA92	442 aa		10.41	□□□□□ -0.74
YBX3-218	ENST00000546298	XPNPEP1	Q9NQW7	623 aa		10.41	□□□□□ -0.74
YBX3-218	ENST00000546298	TBC1D13	Q9NVG8	400 aa		10.41	□□□□□ -0.74
YBX3-218	ENST00000546298	USP15	Q9Y4E8	981 aa	Predicted RBP	10.41	□□□□□ -0.74
YBX3-218	ENST00000546298	STK24	Q9Y6E0	443 aa		10.41	□□□□□ -0.74
YBX3-218	ENST00000546298	BRWD1	Q9NSI6	2320 aa		10.41	□□□□□ -0.74
YBX3-218	ENST00000546298	MYO7A	Q13402	2215 aa		10.41	□□□□□ -0.74
YBX3-218	ENST00000546298	C2orf71	A6NGG8	1288 aa		10.4	□□□□□ -0.74
YBX3-218	ENST00000546298	POTEM	A6NI47	508 aa		10.4	□□□□□ -0.74
YBX3-218	ENST00000546298	NT5C1B-RDH14	C9J2C7	533 aa		10.4	□□□□□ -0.74
YBX3-218	ENST00000546298	CXCL14	O95715	111 aa		10.4	□□□□□ -0.74

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