RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 DLGAP3O95886 979 aa14.14□□□□□ -0.15
USP40-208ENST00000450966 BTKQ06187 659 aa14.14□□□□□ -0.15
USP40-208ENST00000450966 USH1GQ495M9 461 aa14.14□□□□□ -0.15
USP40-208ENST00000450966 ASPRV1Q53RT3 343 aa14.14□□□□□ -0.15
USP40-208ENST00000450966 FOXP4Q8IVH2 680 aaPredicted RBP14.14□□□□□ -0.15
USP40-208ENST00000450966 PIGBQ92521 554 aa14.14□□□□□ -0.15
USP40-208ENST00000450966 SLC10A4Q96EP9 437 aa14.14□□□□□ -0.15
USP40-208ENST00000450966 RWDD2AQ9UIY3 292 aa14.14□□□□□ -0.15
USP40-208ENST00000450966 CHRM1P11229 460 aaPredicted RBP14.13□□□□□ -0.15
USP40-208ENST00000450966 PLS3P13797 630 aa14.13□□□□□ -0.15
USP40-208ENST00000450966 ATF7P17544 494 aaPredicted RBP14.13□□□□□ -0.15
USP40-208ENST00000450966 HOXA7P31268 230 aaPredicted RBP14.13□□□□□ -0.15
USP40-208ENST00000450966 SPOUT1Q5T280 376 aaKnown RBP14.13□□□□□ -0.15
USP40-208ENST00000450966 FBXO11Q86XK2 927 aa14.13□□□□□ -0.15
USP40-208ENST00000450966 SIX6OS1Q8N1H7 587 aa14.13□□□□□ -0.15
USP40-208ENST00000450966 PITPNM2Q9BZ72 1349 aa14.13□□□□□ -0.15
USP40-208ENST00000450966 M0R3G1 203 aa14.13□□□□□ -0.15
USP40-208ENST00000450966 PRPF6O94906 941 aaKnown RBP14.13□□□□□ -0.15
USP40-208ENST00000450966 RPN1P04843 607 aaKnown RBP14.13□□□□□ -0.15
USP40-208ENST00000450966 YWHAGP61981 247 aaKnown RBP eCLIP14.13□□□□□ -0.15
USP40-208ENST00000450966 POTEAQ6S8J7 498 aa14.13□□□□□ -0.15
USP40-208ENST00000450966 FAM160B2Q86V87 743 aa14.13□□□□□ -0.15
USP40-208ENST00000450966 GPIHBP1Q8IV16 184 aa14.13□□□□□ -0.15
USP40-208ENST00000450966 SPATA4Q8NEY3 305 aa14.13□□□□□ -0.15
USP40-208ENST00000450966 ERP27Q96DN0 273 aa14.13□□□□□ -0.15
USP40-208ENST00000450966 MCRS1Q96EZ8 462 aa14.13□□□□□ -0.15
USP40-208ENST00000450966 PRPF18Q99633 342 aaKnown RBP14.13□□□□□ -0.15
USP40-208ENST00000450966 KANSL2Q9H9L4 492 aa14.13□□□□□ -0.15
USP40-208ENST00000450966 PARVGQ9HBI0 331 aa14.13□□□□□ -0.15
USP40-208ENST00000450966 BLOC1S6Q9UL45 172 aa14.13□□□□□ -0.15
USP40-208ENST00000450966 O00370 1275 aa14.13□□□□□ -0.15
USP40-208ENST00000450966 PRR29P0C7W0 189 aa14.13□□□□□ -0.15
USP40-208ENST00000450966 SGO2Q562F6 1265 aa14.13□□□□□ -0.15
USP40-208ENST00000450966 PCNX4Q63HM2 1172 aa14.13□□□□□ -0.15
USP40-208ENST00000450966 RNF207Q6ZRF8 634 aa14.13□□□□□ -0.15
USP40-208ENST00000450966 STAG2Q8N3U4 1231 aa14.13□□□□□ -0.15
USP40-208ENST00000450966 CCDC24Q8N4L8 307 aa14.13□□□□□ -0.15
USP40-208ENST00000450966 SUN5Q8TC36 379 aa14.13□□□□□ -0.15
USP40-208ENST00000450966 GLG1Q92896 1179 aa14.13□□□□□ -0.15
USP40-208ENST00000450966 SKA1Q96BD8 255 aa14.13□□□□□ -0.15
USP40-208ENST00000450966 ABCC4O15439 1325 aa14.13□□□□□ -0.15
USP40-208ENST00000450966 USP31Q70CQ4 1352 aa14.13□□□□□ -0.15
USP40-208ENST00000450966 TAF4O00268 1085 aa14.13□□□□□ -0.15
USP40-208ENST00000450966 ACSL3O95573 720 aa14.13□□□□□ -0.15
USP40-208ENST00000450966 CD19P15391 556 aa14.13□□□□□ -0.15
USP40-208ENST00000450966 C4BPBP20851 252 aa14.13□□□□□ -0.15
USP40-208ENST00000450966 EIF4A3P38919 411 aaKnown RBP14.13□□□□□ -0.15
USP40-208ENST00000450966 THOC7Q6I9Y2 204 aaKnown RBP14.13□□□□□ -0.15
USP40-208ENST00000450966 NFRKBQ6P4R8 1299 aa14.13□□□□□ -0.15
USP40-208ENST00000450966 PLD3Q8IV08 490 aa14.13□□□□□ -0.15
USP40-208ENST00000450966 MTBPQ96DY7 904 aa14.13□□□□□ -0.15
USP40-208ENST00000450966 CNOT6LQ96LI5 555 aaKnown RBP14.13□□□□□ -0.15
USP40-208ENST00000450966 QKIQ96PU8 341 aaKnown RBP eCLIP14.13□□□□□ -0.153e-9■■■■■ 37
USP40-208ENST00000450966 MRPS26Q9BYN8 205 aaKnown RBP14.13□□□□□ -0.15
USP40-208ENST00000450966 WWP1Q9H0M0 922 aa14.13□□□□□ -0.15
USP40-208ENST00000450966 GALNT8Q9NY28 637 aa14.13□□□□□ -0.15
USP40-208ENST00000450966 C6orf203Q9P0P8 240 aaPredicted RBP14.13□□□□□ -0.15
USP40-208ENST00000450966 USTQ9Y2C2 406 aa14.13□□□□□ -0.15
USP40-208ENST00000450966 CLIC4Q9Y696 253 aa14.13□□□□□ -0.15
USP40-208ENST00000450966 PRR36Q9H6K5 1346 aa14.13□□□□□ -0.15
USP40-208ENST00000450966 UNC13BO14795 1591 aa14.13□□□□□ -0.15
USP40-208ENST00000450966 TOM1L1O75674 476 aa14.13□□□□□ -0.15
USP40-208ENST00000450966 C16orf72Q14CZ0 275 aa14.13□□□□□ -0.15
USP40-208ENST00000450966 WASHC2DQ5SRD0 308 aa14.13□□□□□ -0.15
USP40-208ENST00000450966 NOSTRINQ8IVI9 506 aa14.13□□□□□ -0.15
USP40-208ENST00000450966 DHTKD1Q96HY7 919 aaPredicted RBP14.13□□□□□ -0.15
USP40-208ENST00000450966 SENP1Q9P0U3 644 aa14.13□□□□□ -0.15
USP40-208ENST00000450966 SH3BP1Q9Y3L3 701 aa14.13□□□□□ -0.15
USP40-208ENST00000450966 MSL3P1P0C860 447 aa14.12□□□□□ -0.15
USP40-208ENST00000450966 PAX3P23760 479 aa14.12□□□□□ -0.15
USP40-208ENST00000450966 TMPRSS15P98073 1019 aa14.12□□□□□ -0.15
USP40-208ENST00000450966 GABPAQ06546 454 aa14.12□□□□□ -0.15
USP40-208ENST00000450966 FCHO2Q0JRZ9 810 aa14.12□□□□□ -0.15
USP40-208ENST00000450966 RC3H1Q5TC82 1133 aaKnown RBP14.12□□□□□ -0.15
USP40-208ENST00000450966 MAEAQ7L5Y9 396 aa14.12□□□□□ -0.15
USP40-208ENST00000450966 NCAPG2Q86XI2 1143 aa14.12□□□□□ -0.15
USP40-208ENST00000450966 SRRM1Q8IYB3 904 aaKnown RBP14.12□□□□□ -0.15
USP40-208ENST00000450966 GIPC2Q8TF65 315 aa14.12□□□□□ -0.15
USP40-208ENST00000450966 ADPGKQ9BRR6 497 aa14.12□□□□□ -0.15
USP40-208ENST00000450966 SAMSN1Q9NSI8 373 aaKnown RBP14.12□□□□□ -0.15
USP40-208ENST00000450966 ARHGEF40Q8TER5 1519 aa14.12□□□□□ -0.15
USP40-208ENST00000450966 FAM187AA6NFU0 413 aa14.12□□□□□ -0.15
USP40-208ENST00000450966 RASSF9O75901 435 aa14.12□□□□□ -0.15
USP40-208ENST00000450966 FMNL1O95466 1100 aaPredicted RBP14.12□□□□□ -0.15
USP40-208ENST00000450966 KRT19P08727 400 aa14.12□□□□□ -0.15
USP40-208ENST00000450966 BFSP1Q12934 665 aa14.12□□□□□ -0.15
USP40-208ENST00000450966 PPP2R5CQ13362 524 aa14.12□□□□□ -0.15
USP40-208ENST00000450966 B3GNT6Q6ZMB0 384 aa14.12□□□□□ -0.15
USP40-208ENST00000450966 NLRP10Q86W26 655 aa14.12□□□□□ -0.15
USP40-208ENST00000450966 LENG1Q96BZ8 264 aaPredicted RBP14.12□□□□□ -0.15
USP40-208ENST00000450966 TTC25Q96NG3 672 aa14.12□□□□□ -0.15
USP40-208ENST00000450966 ZIM3Q96PE6 472 aa14.12□□□□□ -0.15
USP40-208ENST00000450966 AP1M1Q9BXS5 423 aa14.12□□□□□ -0.15
USP40-208ENST00000450966 CCDC90BQ9GZT6 254 aa14.12□□□□□ -0.15
USP40-208ENST00000450966 DCTN4Q9UJW0 460 aa14.12□□□□□ -0.15
USP40-208ENST00000450966 RNF17Q9BXT8 1623 aaKnown RBP14.12□□□□□ -0.15
USP40-208ENST00000450966 PALM2-AKAP2B1ALY0 433 aaPredicted RBP14.12□□□□□ -0.15
USP40-208ENST00000450966 RTN3O95197 1032 aaPredicted RBP14.12□□□□□ -0.15
USP40-208ENST00000450966 SERPING1P05155 500 aa14.12□□□□□ -0.15
USP40-208ENST00000450966 MAGEA8P43361 318 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms