RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 CAPSQ13938 189 aa22.39■■□□□ 1.17
SS18-218ENST00000581021 PTPAQ15257 358 aa22.39■■□□□ 1.17
SS18-218ENST00000581021 SF3A1Q15459 793 aaKnown RBP22.39■■□□□ 1.17
SS18-218ENST00000581021 SLC24A5Q71RS6 500 aa22.39■■□□□ 1.17
SS18-218ENST00000581021 EXOC8Q8IYI6 725 aa22.39■■□□□ 1.17
SS18-218ENST00000581021 TCP11Q8WWU5 503 aa22.39■■□□□ 1.17
SS18-218ENST00000581021 CCDC43Q96MW1 224 aaKnown RBP22.39■■□□□ 1.17
SS18-218ENST00000581021 PNMA5Q96PV4 448 aa22.39■■□□□ 1.17
SS18-218ENST00000581021 POLR3FQ9H1D9 316 aaPredicted RBP22.39■■□□□ 1.17
SS18-218ENST00000581021 MUTP22033 750 aa22.38■■□□□ 1.17
SS18-218ENST00000581021 ODR4Q5SWX8 454 aa22.38■■□□□ 1.17
SS18-218ENST00000581021 ARL6IP4Q66PJ3 421 aaKnown RBP22.38■■□□□ 1.17
SS18-218ENST00000581021 PADI6Q6TGC4 694 aa22.38■■□□□ 1.17
SS18-218ENST00000581021 MAEAQ7L5Y9 396 aa22.38■■□□□ 1.17
SS18-218ENST00000581021 RNF149Q8NC42 400 aa22.38■■□□□ 1.17
SS18-218ENST00000581021 GDPD5Q8WTR4 605 aa22.38■■□□□ 1.17
SS18-218ENST00000581021 TGS1Q96RS0 853 aaKnown RBP22.38■■□□□ 1.17
SS18-218ENST00000581021 RAB34Q9BZG1 259 aa22.38■■□□□ 1.17
SS18-218ENST00000581021 BHMT2Q9H2M3 363 aa22.38■■□□□ 1.17
SS18-218ENST00000581021 C1orf112Q9NSG2 853 aa22.38■■□□□ 1.17
SS18-218ENST00000581021 RNF19AQ9NV58 838 aa22.38■■□□□ 1.17
SS18-218ENST00000581021 E9PMD0 336 aa22.37■■□□□ 1.17
SS18-218ENST00000581021 ATF7P17544 494 aaPredicted RBP22.37■■□□□ 1.17
SS18-218ENST00000581021 SPRYD3Q8NCJ5 442 aa22.37■■□□□ 1.17
SS18-218ENST00000581021 MAFAQ8NHW3 353 aaPredicted RBP22.37■■□□□ 1.17
SS18-218ENST00000581021 LRRC15Q8TF66 581 aa22.37■■□□□ 1.17
SS18-218ENST00000581021 BSNDQ8WZ55 320 aa22.37■■□□□ 1.17
SS18-218ENST00000581021 ARHGEF35A5YM69 484 aa22.36■■□□□ 1.17
SS18-218ENST00000581021 FGFR1P11362 822 aa22.36■■□□□ 1.17
SS18-218ENST00000581021 SFPQP23246 707 aaKnown RBP eCLIP22.36■■□□□ 1.17
SS18-218ENST00000581021 PTENP60484 403 aa22.36■■□□□ 1.17
SS18-218ENST00000581021 GRB10Q13322 594 aa22.36■■□□□ 1.17
SS18-218ENST00000581021 PKP1Q13835 747 aa22.36■■□□□ 1.17
SS18-218ENST00000581021 FAM102BQ5T8I3 360 aa22.36■■□□□ 1.17
SS18-218ENST00000581021 KRT79Q5XKE5 535 aa22.36■■□□□ 1.17
SS18-218ENST00000581021 POLD4Q9HCU8 107 aa22.36■■□□□ 1.17
SS18-218ENST00000581021 HCSTQ9UBK5 93 aa22.36■■□□□ 1.17
SS18-218ENST00000581021 MRPL42Q9Y6G3 142 aaKnown RBP22.36■■□□□ 1.17
SS18-218ENST00000581021 CYP11B2P19099 503 aa22.35■■□□□ 1.17
SS18-218ENST00000581021 HOXA11P31270 313 aaPredicted RBP22.35■■□□□ 1.17
SS18-218ENST00000581021 MXD4Q14582 209 aaPredicted RBP22.35■■□□□ 1.17
SS18-218ENST00000581021 PAN2Q504Q3 1202 aaKnown RBP22.35■■□□□ 1.17
SS18-218ENST00000581021 HYIQ5T013 277 aa22.35■■□□□ 1.17
SS18-218ENST00000581021 FAM43BQ6ZT52 329 aaPredicted RBP22.35■■□□□ 1.17
SS18-218ENST00000581021 CATSPER4Q7RTX7 472 aa22.35■■□□□ 1.17
SS18-218ENST00000581021 ZNF598Q86UK7 904 aaKnown RBP22.35■■□□□ 1.17
SS18-218ENST00000581021 ECHDC2Q86YB7 292 aa22.35■■□□□ 1.17
SS18-218ENST00000581021 USP28Q96RU2 1077 aa22.35■■□□□ 1.17
SS18-218ENST00000581021 GAS2L1Q99501 681 aaPredicted RBP22.35■■□□□ 1.17
SS18-218ENST00000581021 AGPAT5Q9NUQ2 364 aa22.35■■□□□ 1.17
SS18-218ENST00000581021 PIN4Q9Y237 131 aaKnown RBP22.35■■□□□ 1.17
SS18-218ENST00000581021 UNC80Q8N2C7 3258 aa22.34■■□□□ 1.17
SS18-218ENST00000581021 KIAA1671Q9BY89 1806 aa22.34■■□□□ 1.17
SS18-218ENST00000581021 ASAP2O43150 1006 aa22.34■■□□□ 1.17
SS18-218ENST00000581021 STAG3L1P0CL83 205 aa22.34■■□□□ 1.17
SS18-218ENST00000581021 IGFBP4P22692 258 aa22.34■■□□□ 1.17
SS18-218ENST00000581021 MBTD1Q05BQ5 628 aa22.34■■□□□ 1.17
SS18-218ENST00000581021 BTG3Q14201 252 aaPredicted RBP22.34■■□□□ 1.17
SS18-218ENST00000581021 ZRSR1Q15695 479 aaKnown RBP22.34■■□□□ 1.17
SS18-218ENST00000581021 AMHR2Q16671 573 aa22.34■■□□□ 1.17
SS18-218ENST00000581021 TMEM119Q4V9L6 283 aa22.34■■□□□ 1.17
SS18-218ENST00000581021 EPC2Q52LR7 807 aa22.34■■□□□ 1.17
SS18-218ENST00000581021 SRGAP1Q7Z6B7 1085 aa22.34■■□□□ 1.17
SS18-218ENST00000581021 IFNLR1Q8IU57 520 aaPredicted RBP22.34■■□□□ 1.17
SS18-218ENST00000581021 FIBCD1Q8N539 461 aa22.34■■□□□ 1.17
SS18-218ENST00000581021 MCPH1Q8NEM0 835 aa22.34■■□□□ 1.17
SS18-218ENST00000581021 PLIN2Q99541 437 aa22.34■■□□□ 1.17
SS18-218ENST00000581021 RUSC1Q9BVN2 902 aa22.34■■□□□ 1.17
SS18-218ENST00000581021 TMEM161AQ9NX61 479 aa22.34■■□□□ 1.17
SS18-218ENST00000581021 LRFN2Q9ULH4 789 aa22.34■■□□□ 1.17
SS18-218ENST00000581021 PCDHB7Q9Y5E2 793 aa22.34■■□□□ 1.17
SS18-218ENST00000581021 STK24Q9Y6E0 443 aa22.34■■□□□ 1.17
SS18-218ENST00000581021 NLRC5Q86WI3 1866 aa22.34■■□□□ 1.17
SS18-218ENST00000581021 PRRC2BQ5JSZ5 2229 aaKnown RBP22.34■■□□□ 1.17
SS18-218ENST00000581021 EYA4O95677 639 aa22.33■■□□□ 1.17
SS18-218ENST00000581021 BMP15O95972 392 aa22.33■■□□□ 1.17
SS18-218ENST00000581021 ZSCAN20P17040 1043 aaPredicted RBP22.33■■□□□ 1.17
SS18-218ENST00000581021 PHKA2P46019 1235 aa22.33■■□□□ 1.17
SS18-218ENST00000581021 CEBPZQ03701 1054 aaKnown RBP22.33■■□□□ 1.17
SS18-218ENST00000581021 FOXD4L5Q5VV16 416 aaPredicted RBP22.33■■□□□ 1.17
SS18-218ENST00000581021 TMEM192Q8IY95 271 aa22.33■■□□□ 1.17
SS18-218ENST00000581021 CMTR2Q8IYT2 770 aaKnown RBP22.33■■□□□ 1.17
SS18-218ENST00000581021 FOXD4L4Q8WXT5 416 aaPredicted RBP22.33■■□□□ 1.17
SS18-218ENST00000581021 CLP1Q92989 425 aaKnown RBP22.33■■□□□ 1.17
SS18-218ENST00000581021 INO80BQ9C086 356 aaPredicted RBP22.33■■□□□ 1.17
SS18-218ENST00000581021 ELAC1Q9H777 363 aaKnown RBP22.33■■□□□ 1.17
SS18-218ENST00000581021 FBXO2Q9UK22 296 aaPredicted RBP22.33■■□□□ 1.17
SS18-218ENST00000581021 MTCH2Q9Y6C9 303 aa22.33■■□□□ 1.17
SS18-218ENST00000581021 FNDC1Q4ZHG4 1894 aaPredicted RBP22.32■■□□□ 1.16
SS18-218ENST00000581021 A0A0U1RQF3 1178 aa22.32■■□□□ 1.16
SS18-218ENST00000581021 MEIS3P2A8K0S8 358 aa22.32■■□□□ 1.16
SS18-218ENST00000581021 TSPAN1O60635 241 aa22.32■■□□□ 1.16
SS18-218ENST00000581021 MARCKSP29966 332 aaPredicted RBP22.32■■□□□ 1.16
SS18-218ENST00000581021 CLLU1OSQ5K130 101 aa22.32■■□□□ 1.16
SS18-218ENST00000581021 UBXN11Q5T124 520 aa22.32■■□□□ 1.16
SS18-218ENST00000581021 USP49Q70CQ1 688 aa22.32■■□□□ 1.16
SS18-218ENST00000581021 DAW1Q8N136 415 aa22.32■■□□□ 1.16
SS18-218ENST00000581021 FBXO22Q8NEZ5 403 aa22.32■■□□□ 1.16
SS18-218ENST00000581021 TRAIPQ9BWF2 469 aa22.32■■□□□ 1.16
SS18-218ENST00000581021 CHST12Q9NRB3 414 aa22.32■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms