RNA–Protein interactions for RNA: ENST00000530546.5

USP35-207, Transcript of ubiquitin specific peptidase 35, humanhuman

TSL 1 (best)

Gene USP35, Length 2,986 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP35-207ENST00000530546 RIPK3Q9Y572 518 aa12.58□□□□□ -0.4
USP35-207ENST00000530546 FAM170AA1A519 330 aa12.57□□□□□ -0.4
USP35-207ENST00000530546 HMGCS2P54868 508 aa12.57□□□□□ -0.4
USP35-207ENST00000530546 DRP2Q13474 957 aa12.57□□□□□ -0.4
USP35-207ENST00000530546 RNF207Q6ZRF8 634 aa12.57□□□□□ -0.4
USP35-207ENST00000530546 ZNF662Q6ZS27 426 aa12.57□□□□□ -0.4
USP35-207ENST00000530546 DNAAF5Q86Y56 855 aa12.57□□□□□ -0.4
USP35-207ENST00000530546 CCDC50Q8IVM0 306 aa12.57□□□□□ -0.4
USP35-207ENST00000530546 FAM186BQ8IYM0 893 aa12.57□□□□□ -0.4
USP35-207ENST00000530546 CCDC43Q96MW1 224 aaKnown RBP12.57□□□□□ -0.4
USP35-207ENST00000530546 RMDN3Q96TC7 470 aa12.57□□□□□ -0.4
USP35-207ENST00000530546 ADAMTS1Q9UHI8 967 aa12.57□□□□□ -0.4
USP35-207ENST00000530546 TCEAL9Q9UHQ7 104 aa12.57□□□□□ -0.4
USP35-207ENST00000530546 SALL4Q9UJQ4 1053 aa12.57□□□□□ -0.4
USP35-207ENST00000530546 FRMPD4Q14CM0 1322 aa12.57□□□□□ -0.4
USP35-207ENST00000530546 ZNF541Q9H0D2 1346 aa12.57□□□□□ -0.4
USP35-207ENST00000530546 ZMYM2Q9UBW7 1377 aa12.57□□□□□ -0.4
USP35-207ENST00000530546 NCK2O43639 380 aa12.57□□□□□ -0.4
USP35-207ENST00000530546 B3GNT9Q6UX72 402 aa12.57□□□□□ -0.4
USP35-207ENST00000530546 FAM43BQ6ZT52 329 aaPredicted RBP12.57□□□□□ -0.4
USP35-207ENST00000530546 HS2ST1Q7LGA3 356 aa12.57□□□□□ -0.4
USP35-207ENST00000530546 ZNF720Q7Z2F6 126 aa12.57□□□□□ -0.4
USP35-207ENST00000530546 MAGEC3Q8TD91 643 aa12.57□□□□□ -0.4
USP35-207ENST00000530546 PICK1Q9NRD5 415 aa12.57□□□□□ -0.4
USP35-207ENST00000530546 ZHX2Q9Y6X8 837 aa12.57□□□□□ -0.4
USP35-207ENST00000530546 RPTORQ8N122 1335 aa12.57□□□□□ -0.4
USP35-207ENST00000530546 DHX15O43143 795 aaKnown RBP12.57□□□□□ -0.4
USP35-207ENST00000530546 SORBS3O60504 671 aa12.57□□□□□ -0.4
USP35-207ENST00000530546 ATP9AO75110 1047 aa12.57□□□□□ -0.4
USP35-207ENST00000530546 PON1P27169 355 aa12.57□□□□□ -0.4
USP35-207ENST00000530546 CXCR5P32302 372 aa12.57□□□□□ -0.4
USP35-207ENST00000530546 BAATQ14032 418 aaPredicted RBP12.57□□□□□ -0.4
USP35-207ENST00000530546 ASTE1Q2TB18 679 aaPredicted RBP12.57□□□□□ -0.4
USP35-207ENST00000530546 ARHGEF16Q5VV41 709 aa12.57□□□□□ -0.4
USP35-207ENST00000530546 PAPD7Q5XG87 772 aaKnown RBP12.57□□□□□ -0.4
USP35-207ENST00000530546 IQCEQ6IPM2 695 aa12.57□□□□□ -0.4
USP35-207ENST00000530546 SLC35C1Q96A29 364 aa12.57□□□□□ -0.4
USP35-207ENST00000530546 METTL14Q9HCE5 456 aaKnown RBP12.57□□□□□ -0.4
USP35-207ENST00000530546 CD248Q9HCU0 757 aa12.57□□□□□ -0.4
USP35-207ENST00000530546 RNF146Q9NTX7 359 aa12.57□□□□□ -0.4
USP35-207ENST00000530546 UBIAD1Q9Y5Z9 338 aa12.57□□□□□ -0.4
USP35-207ENST00000530546 SSU72P8A0A1W2PR75 194 aa12.56□□□□□ -0.4
USP35-207ENST00000530546 K7ENM7 598 aa12.56□□□□□ -0.4
USP35-207ENST00000530546 P4HBP07237 508 aaKnown RBP12.56□□□□□ -0.4
USP35-207ENST00000530546 TRIM49P0CI25 452 aa12.56□□□□□ -0.4
USP35-207ENST00000530546 TRIM49CP0CI26 452 aa12.56□□□□□ -0.4
USP35-207ENST00000530546 UCHL3P15374 230 aa12.56□□□□□ -0.4
USP35-207ENST00000530546 PGM5Q15124 567 aa12.56□□□□□ -0.4
USP35-207ENST00000530546 PCNX4Q63HM2 1172 aa12.56□□□□□ -0.4
USP35-207ENST00000530546 CCDC70Q6NSX1 233 aa12.56□□□□□ -0.4
USP35-207ENST00000530546 DAW1Q8N136 415 aa12.56□□□□□ -0.4
USP35-207ENST00000530546 TRPM4Q8TD43 1214 aa12.56□□□□□ -0.4
USP35-207ENST00000530546 AENQ8WTP8 325 aaKnown RBP12.56□□□□□ -0.4
USP35-207ENST00000530546 FIZ1Q96SL8 496 aa12.56□□□□□ -0.4
USP35-207ENST00000530546 NUCKS1Q9H1E3 243 aaKnown RBP12.56□□□□□ -0.4
USP35-207ENST00000530546 PCIF1Q9H4Z3 704 aa12.56□□□□□ -0.4
USP35-207ENST00000530546 GCNT4Q9P109 453 aa12.56□□□□□ -0.4
USP35-207ENST00000530546 AJAP1Q9UKB5 411 aaPredicted RBP12.56□□□□□ -0.4
USP35-207ENST00000530546 A0A087X0T9 212 aa12.56□□□□□ -0.4
USP35-207ENST00000530546 A0A1B0GUA9 196 aa12.56□□□□□ -0.4
USP35-207ENST00000530546 TISP43B9A030 160 aa12.56□□□□□ -0.4
USP35-207ENST00000530546 VWA5AO00534 786 aa12.56□□□□□ -0.4
USP35-207ENST00000530546 EIF3DO15371 548 aaKnown RBP eCLIP12.56□□□□□ -0.4
USP35-207ENST00000530546 RASSF9O75901 435 aa12.56□□□□□ -0.4
USP35-207ENST00000530546 LCA5LO95447 670 aa12.56□□□□□ -0.4
USP35-207ENST00000530546 FAM228BP0C875 321 aa12.56□□□□□ -0.4
USP35-207ENST00000530546 PSMC2P35998 433 aaKnown RBP12.56□□□□□ -0.4
USP35-207ENST00000530546 SP4Q02446 784 aa12.56□□□□□ -0.4
USP35-207ENST00000530546 UGCGQ16739 394 aa12.56□□□□□ -0.4
USP35-207ENST00000530546 KLHDC7AQ5VTJ3 777 aa12.56□□□□□ -0.4
USP35-207ENST00000530546 DCAF15Q66K64 600 aa12.56□□□□□ -0.4
USP35-207ENST00000530546 TRIM58Q8NG06 486 aa12.56□□□□□ -0.4
USP35-207ENST00000530546 HINFPQ9BQA5 517 aa12.56□□□□□ -0.4
USP35-207ENST00000530546 PDE2AO00408 941 aaPredicted RBP12.55□□□□□ -0.4
USP35-207ENST00000530546 CDR1P51861 262 aa12.55□□□□□ -0.4
USP35-207ENST00000530546 BACE1P56817 501 aa12.55□□□□□ -0.4
USP35-207ENST00000530546 MAP2K1Q02750 393 aaPredicted RBP12.55□□□□□ -0.4
USP35-207ENST00000530546 ACTN3Q08043 901 aaPredicted RBP12.55□□□□□ -0.4
USP35-207ENST00000530546 CEP85LQ5SZL2 805 aa12.55□□□□□ -0.4
USP35-207ENST00000530546 SNRNP48Q6IEG0 339 aaKnown RBP12.55□□□□□ -0.4
USP35-207ENST00000530546 STXBP4Q6ZWJ1 553 aa12.55□□□□□ -0.4
USP35-207ENST00000530546 SCYL3Q8IZE3 742 aa12.55□□□□□ -0.4
USP35-207ENST00000530546 KCTD17Q8N5Z5 321 aa12.55□□□□□ -0.4
USP35-207ENST00000530546 ZNF280CQ8ND82 737 aa12.55□□□□□ -0.4
USP35-207ENST00000530546 PACSIN1Q9BY11 444 aa12.55□□□□□ -0.4
USP35-207ENST00000530546 TRIM6Q9C030 488 aaPredicted RBP12.55□□□□□ -0.4
USP35-207ENST00000530546 AGPAT3Q9NRZ7 376 aa12.55□□□□□ -0.4
USP35-207ENST00000530546 SMARCAL1Q9NZC9 954 aa12.55□□□□□ -0.4
USP35-207ENST00000530546 KIF13BQ9NQT8 1826 aa12.55□□□□□ -0.4
USP35-207ENST00000530546 SLC16A3O15427 465 aaKnown RBP12.55□□□□□ -0.4
USP35-207ENST00000530546 BCRP11274 1271 aa12.55□□□□□ -0.4
USP35-207ENST00000530546 PTPRAP18433 802 aa12.55□□□□□ -0.4
USP35-207ENST00000530546 KCNA4P22459 653 aa12.55□□□□□ -0.4
USP35-207ENST00000530546 QARSP47897 775 aaKnown RBP12.55□□□□□ -0.4
USP35-207ENST00000530546 C2orf54Q08AI8 447 aa12.55□□□□□ -0.4
USP35-207ENST00000530546 MAPK7Q13164 816 aa12.55□□□□□ -0.4
USP35-207ENST00000530546 ALS2CLQ60I27 953 aa12.55□□□□□ -0.4
USP35-207ENST00000530546 PLA2G4FQ68DD2 849 aa12.55□□□□□ -0.4
USP35-207ENST00000530546 NFRKBQ6P4R8 1299 aa12.55□□□□□ -0.4
USP35-207ENST00000530546 DLK2Q6UY11 383 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms