RNA–Protein interactions for RNA: ENST00000559389.1

SNX1-206, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 753 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-206ENST00000559389 C1orf186Q6ZWK4 172 aa24.08■■□□□ 1.45
SNX1-206ENST00000559389 TMEM199Q8N511 208 aa24.08■■□□□ 1.45
SNX1-206ENST00000559389 MRPS27Q92552 414 aaKnown RBP24.08■■□□□ 1.45
SNX1-206ENST00000559389 POLR3FQ9H1D9 316 aaPredicted RBP24.08■■□□□ 1.45
SNX1-206ENST00000559389 GPRC5CQ9NQ84 441 aa24.08■■□□□ 1.45
SNX1-206ENST00000559389 KCND2Q9NZV8 630 aa24.08■■□□□ 1.45
SNX1-206ENST00000559389 KCNH3Q9ULD8 1083 aa24.08■■□□□ 1.45
SNX1-206ENST00000559389 GPR32O75388 356 aa24.07■■□□□ 1.44
SNX1-206ENST00000559389 CSF2RAP15509 400 aa24.07■■□□□ 1.44
SNX1-206ENST00000559389 GUCY2CP25092 1073 aa24.07■■□□□ 1.44
SNX1-206ENST00000559389 ARL2P36404 184 aa24.07■■□□□ 1.44
SNX1-206ENST00000559389 GPC3P51654 580 aa24.07■■□□□ 1.44
SNX1-206ENST00000559389 FPGSQ05932 587 aa24.07■■□□□ 1.44
SNX1-206ENST00000559389 GPNMBQ14956 572 aa24.07■■□□□ 1.44
SNX1-206ENST00000559389 ZNF710Q8N1W2 664 aa24.07■■□□□ 1.44
SNX1-206ENST00000559389 DHX58Q96C10 678 aa24.07■■□□□ 1.44
SNX1-206ENST00000559389 PPP1R16BQ96T49 567 aa24.07■■□□□ 1.44
SNX1-206ENST00000559389 LBHD1Q9BQE6 289 aaPredicted RBP24.07■■□□□ 1.44
SNX1-206ENST00000559389 PYM1Q9BRP8 204 aaKnown RBP24.07■■□□□ 1.44
SNX1-206ENST00000559389 PANK2Q9BZ23 570 aa24.07■■□□□ 1.44
SNX1-206ENST00000559389 CELF4Q9BZC1 486 aaKnown RBP24.07■■□□□ 1.44
SNX1-206ENST00000559389 ADAMTS10Q9H324 1103 aa24.07■■□□□ 1.44
SNX1-206ENST00000559389 CUEDC2Q9H467 287 aa24.07■■□□□ 1.44
SNX1-206ENST00000559389 COL4A3BPQ9Y5P4 624 aa24.07■■□□□ 1.44
SNX1-206ENST00000559389 A0A1B0GVL5 298 aa24.06■■□□□ 1.44
SNX1-206ENST00000559389 POLR2DO15514 142 aaKnown RBP24.06■■□□□ 1.44
SNX1-206ENST00000559389 NBNO60934 754 aa24.06■■□□□ 1.44
SNX1-206ENST00000559389 MAGEA10P43363 369 aaPredicted RBP24.06■■□□□ 1.44
SNX1-206ENST00000559389 MDM2Q00987 491 aaPredicted RBP24.06■■□□□ 1.44
SNX1-206ENST00000559389 MAPK7Q13164 816 aa24.06■■□□□ 1.44
SNX1-206ENST00000559389 KIZQ2M2Z5 673 aa24.06■■□□□ 1.44
SNX1-206ENST00000559389 MAEAQ7L5Y9 396 aa24.06■■□□□ 1.44
SNX1-206ENST00000559389 GPBP1Q86WP2 473 aa24.06■■□□□ 1.44
SNX1-206ENST00000559389 RHPN2Q8IUC4 686 aa24.06■■□□□ 1.44
SNX1-206ENST00000559389 FSIP1Q8NA03 581 aa24.06■■□□□ 1.44
SNX1-206ENST00000559389 IQUBQ8NA54 791 aa24.06■■□□□ 1.44
SNX1-206ENST00000559389 TIPINQ9BVW5 301 aa24.06■■□□□ 1.44
SNX1-206ENST00000559389 GOLPH3LQ9H4A5 285 aa24.06■■□□□ 1.44
SNX1-206ENST00000559389 NLRP11P59045 1033 aaKnown RBP24.05■■□□□ 1.44
SNX1-206ENST00000559389 PPIGQ13427 754 aaKnown RBP eCLIP24.05■■□□□ 1.441e-7■□□□□ 8.7
SNX1-206ENST00000559389 DHX8Q14562 1220 aaKnown RBP24.05■■□□□ 1.44
SNX1-206ENST00000559389 ARSHQ5FYA8 562 aa24.05■■□□□ 1.44
SNX1-206ENST00000559389 FAM102BQ5T8I3 360 aa24.05■■□□□ 1.44
SNX1-206ENST00000559389 ZNF410Q86VK4 478 aa24.05■■□□□ 1.44
SNX1-206ENST00000559389 DAW1Q8N136 415 aa24.05■■□□□ 1.44
SNX1-206ENST00000559389 ASAP3Q8TDY4 903 aa24.05■■□□□ 1.44
SNX1-206ENST00000559389 PRPF31Q8WWY3 499 aaKnown RBP24.05■■□□□ 1.44
SNX1-206ENST00000559389 VWCEQ96DN2 955 aa24.05■■□□□ 1.44
SNX1-206ENST00000559389 NLRP4Q96MN2 994 aa24.05■■□□□ 1.44
SNX1-206ENST00000559389 CXCL10P02778 98 aa24.04■■□□□ 1.44
SNX1-206ENST00000559389 GLRA2P23416 452 aa24.04■■□□□ 1.44
SNX1-206ENST00000559389 NDUFA8P51970 172 aa24.04■■□□□ 1.44
SNX1-206ENST00000559389 CRYBB1P53674 252 aaPredicted RBP24.04■■□□□ 1.44
SNX1-206ENST00000559389 CDC42EP1Q00587 391 aa24.04■■□□□ 1.44
SNX1-206ENST00000559389 LAMTOR4Q0VGL1 99 aa24.04■■□□□ 1.44
SNX1-206ENST00000559389 MXD4Q14582 209 aaPredicted RBP24.04■■□□□ 1.44
SNX1-206ENST00000559389 FBXO47Q5MNV8 452 aa24.04■■□□□ 1.44
SNX1-206ENST00000559389 KSR1Q8IVT5 923 aa24.04■■□□□ 1.44
SNX1-206ENST00000559389 TMEM40Q8WWA1 233 aa24.04■■□□□ 1.44
SNX1-206ENST00000559389 KIFAP3Q92845 792 aa24.04■■□□□ 1.44
SNX1-206ENST00000559389 OSMRQ99650 979 aa24.04■■□□□ 1.44
SNX1-206ENST00000559389 OSBPL7Q9BZF2 842 aa24.04■■□□□ 1.44
SNX1-206ENST00000559389 MAGEF1Q9HAY2 307 aa24.04■■□□□ 1.44
SNX1-206ENST00000559389 CDHR5Q9HBB8 845 aa24.04■■□□□ 1.44
SNX1-206ENST00000559389 GINS2Q9Y248 185 aa24.04■■□□□ 1.44
SNX1-206ENST00000559389 SQORQ9Y6N5 450 aa24.04■■□□□ 1.44
SNX1-206ENST00000559389 GOLGA6L4A6NEF3 574 aa24.03■■□□□ 1.44
SNX1-206ENST00000559389 ASAP2O43150 1006 aa24.03■■□□□ 1.44
SNX1-206ENST00000559389 HIP1RO75146 1068 aa24.03■■□□□ 1.44
SNX1-206ENST00000559389 PFKMP08237 780 aa24.03■■□□□ 1.44
SNX1-206ENST00000559389 GHRP10912 638 aa24.03■■□□□ 1.44
SNX1-206ENST00000559389 CAPSQ13938 189 aa24.03■■□□□ 1.44
SNX1-206ENST00000559389 LPIN1Q14693 890 aa24.03■■□□□ 1.44
SNX1-206ENST00000559389 TPRNQ4KMQ1 711 aa24.03■■□□□ 1.44
SNX1-206ENST00000559389 TSHZ1Q6ZSZ6 1077 aa24.03■■□□□ 1.44
SNX1-206ENST00000559389 SV2BQ7L1I2 683 aa24.03■■□□□ 1.44
SNX1-206ENST00000559389 NLRP7Q8WX94 980 aa24.03■■□□□ 1.44
SNX1-206ENST00000559389 BSNDQ8WZ55 320 aa24.03■■□□□ 1.44
SNX1-206ENST00000559389 ZNF668Q96K58 619 aaPredicted RBP24.03■■□□□ 1.44
SNX1-206ENST00000559389 DRC1Q96MC2 740 aa24.03■■□□□ 1.44
SNX1-206ENST00000559389 SCLT1Q96NL6 688 aa24.03■■□□□ 1.44
SNX1-206ENST00000559389 TNMDQ9H2S6 317 aa24.03■■□□□ 1.44
SNX1-206ENST00000559389 IL23AQ9NPF7 189 aa24.03■■□□□ 1.44
SNX1-206ENST00000559389 KBTBD4Q9NVX7 518 aa24.03■■□□□ 1.44
SNX1-206ENST00000559389 A0A087WZ62 844 aa24.02■■□□□ 1.44
SNX1-206ENST00000559389 ACTN4O43707 911 aaKnown RBP24.02■■□□□ 1.44
SNX1-206ENST00000559389 DARSP14868 501 aaKnown RBP24.02■■□□□ 1.44
SNX1-206ENST00000559389 SYKP43405 635 aa24.02■■□□□ 1.44
SNX1-206ENST00000559389 EPHB4P54760 987 aa24.02■■□□□ 1.44
SNX1-206ENST00000559389 DEFB128Q7Z7B8 93 aa24.02■■□□□ 1.44
SNX1-206ENST00000559389 USP38Q8NB14 1042 aa24.02■■□□□ 1.44
SNX1-206ENST00000559389 GBP4Q96PP9 640 aa24.02■■□□□ 1.44
SNX1-206ENST00000559389 GDF15Q99988 308 aa24.02■■□□□ 1.44
SNX1-206ENST00000559389 REEP2Q9BRK0 252 aa24.02■■□□□ 1.44
SNX1-206ENST00000559389 FDXACB1Q9BRP7 624 aaPredicted RBP24.02■■□□□ 1.44
SNX1-206ENST00000559389 USP25Q9UHP3 1055 aa24.02■■□□□ 1.44
SNX1-206ENST00000559389 ODF2LQ9ULJ1 636 aa24.02■■□□□ 1.44
SNX1-206ENST00000559389 NPHP3-ACAD11A0A0J9YXS1 232 aa24.01■■□□□ 1.43
SNX1-206ENST00000559389 RBAK-RBAKDNI3L0D1 243 aa24.01■■□□□ 1.43
SNX1-206ENST00000559389 RAD51AP2Q09MP3 1159 aa24.01■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms