RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 MAP9Q49MG5 647 aa9.53□□□□□ -0.88
LIMCH1-209ENST00000509277 ARMC3Q5W041 872 aa9.53□□□□□ -0.88
LIMCH1-209ENST00000509277 OTOP1Q7RTM1 612 aa9.53□□□□□ -0.88
LIMCH1-209ENST00000509277 ENGASEQ8NFI3 743 aa9.53□□□□□ -0.88
LIMCH1-209ENST00000509277 CEP170P1Q96L14 293 aa9.53□□□□□ -0.88
LIMCH1-209ENST00000509277 TINF2Q9BSI4 451 aa9.53□□□□□ -0.88
LIMCH1-209ENST00000509277 KIAA1468Q9P260 1216 aa9.53□□□□□ -0.88
LIMCH1-209ENST00000509277 GDAQ9Y2T3 454 aa9.53□□□□□ -0.88
LIMCH1-209ENST00000509277 PTPRFP10586 1907 aa9.53□□□□□ -0.88
LIMCH1-209ENST00000509277 ASB14A6NK59 587 aa9.53□□□□□ -0.88
LIMCH1-209ENST00000509277 ATP2A1O14983 1001 aa9.53□□□□□ -0.88
LIMCH1-209ENST00000509277 TBCAO75347 108 aaKnown RBP9.53□□□□□ -0.88
LIMCH1-209ENST00000509277 KIF4AO95239 1232 aa9.53□□□□□ -0.88
LIMCH1-209ENST00000509277 CCNE2O96020 404 aa9.53□□□□□ -0.88
LIMCH1-209ENST00000509277 MAP2K5Q13163 448 aa9.53□□□□□ -0.88
LIMCH1-209ENST00000509277 FAM102BQ5T8I3 360 aa9.53□□□□□ -0.88
LIMCH1-209ENST00000509277 NAIF1Q69YI7 327 aaPredicted RBP9.53□□□□□ -0.88
LIMCH1-209ENST00000509277 BCAS4Q8TDM0 211 aa9.53□□□□□ -0.88
LIMCH1-209ENST00000509277 AFG1LQ8WV93 481 aa9.53□□□□□ -0.88
LIMCH1-209ENST00000509277 TRAPPC12Q8WVT3 735 aa9.53□□□□□ -0.88
LIMCH1-209ENST00000509277 MAML3Q96JK9 1138 aa9.53□□□□□ -0.88
LIMCH1-209ENST00000509277 RUFY1Q96T51 708 aa9.53□□□□□ -0.88
LIMCH1-209ENST00000509277 MMTAG2Q9BU76 263 aaKnown RBP9.53□□□□□ -0.88
LIMCH1-209ENST00000509277 CD248Q9HCU0 757 aa9.53□□□□□ -0.88
LIMCH1-209ENST00000509277 KCNMB3Q9NPA1 279 aa9.53□□□□□ -0.88
LIMCH1-209ENST00000509277 UBIAD1Q9Y5Z9 338 aa9.53□□□□□ -0.88
LIMCH1-209ENST00000509277 HGSO14964 777 aaPredicted RBP9.52□□□□□ -0.88
LIMCH1-209ENST00000509277 PGK1P00558 417 aa9.52□□□□□ -0.88
LIMCH1-209ENST00000509277 CTGFP29279 349 aa9.52□□□□□ -0.88
LIMCH1-209ENST00000509277 TCF7P36402 384 aaPredicted RBP9.52□□□□□ -0.88
LIMCH1-209ENST00000509277 SARNPP82979 210 aaKnown RBP9.52□□□□□ -0.88
LIMCH1-209ENST00000509277 Q4G0T1 1027 aa9.52□□□□□ -0.88
LIMCH1-209ENST00000509277 KCTD16Q68DU8 428 aa9.52□□□□□ -0.88
LIMCH1-209ENST00000509277 ARHGAP30Q7Z6I6 1101 aaPredicted RBP9.52□□□□□ -0.88
LIMCH1-209ENST00000509277 OR6J1Q8NGC5 347 aa9.52□□□□□ -0.88
LIMCH1-209ENST00000509277 PNMA5Q96PV4 448 aa9.52□□□□□ -0.88
LIMCH1-209ENST00000509277 FLRT1Q9NZU1 646 aa9.52□□□□□ -0.88
LIMCH1-209ENST00000509277 TRPM7Q96QT4 1865 aa9.52□□□□□ -0.88
LIMCH1-209ENST00000509277 CCDC169A6NNP5 214 aa9.52□□□□□ -0.89
LIMCH1-209ENST00000509277 WDR64B1ANS9 1081 aa9.52□□□□□ -0.89
LIMCH1-209ENST00000509277 RSPH10B2B2RC85 870 aa9.52□□□□□ -0.89
LIMCH1-209ENST00000509277 STRNO43815 780 aa9.52□□□□□ -0.89
LIMCH1-209ENST00000509277 MYL3P08590 195 aa9.52□□□□□ -0.89
LIMCH1-209ENST00000509277 RSPH10BP0C881 870 aa9.52□□□□□ -0.89
LIMCH1-209ENST00000509277 RGS2P41220 211 aa9.52□□□□□ -0.89
LIMCH1-209ENST00000509277 PSEN1P49768 467 aa9.52□□□□□ -0.89
LIMCH1-209ENST00000509277 LACTBP83111 547 aaPredicted RBP9.52□□□□□ -0.89
LIMCH1-209ENST00000509277 SEMA3FQ13275 785 aa9.52□□□□□ -0.89
LIMCH1-209ENST00000509277 KCTD19Q17RG1 926 aaPredicted RBP9.52□□□□□ -0.89
LIMCH1-209ENST00000509277 C17orf99Q6UX52 265 aa9.52□□□□□ -0.89
LIMCH1-209ENST00000509277 MMS22LQ6ZRQ5 1243 aa9.52□□□□□ -0.89
LIMCH1-209ENST00000509277 TADA2BQ86TJ2 420 aa9.52□□□□□ -0.89
LIMCH1-209ENST00000509277 KSR1Q8IVT5 923 aa9.52□□□□□ -0.89
LIMCH1-209ENST00000509277 REXO1L1PQ8IX06 675 aa9.52□□□□□ -0.89
LIMCH1-209ENST00000509277 DNERQ8NFT8 737 aa9.52□□□□□ -0.89
LIMCH1-209ENST00000509277 DDX12PQ92771 950 aa9.52□□□□□ -0.89
LIMCH1-209ENST00000509277 GPRC5CQ9NQ84 441 aa9.52□□□□□ -0.89
LIMCH1-209ENST00000509277 HTTP42858 3142 aa9.52□□□□□ -0.89
LIMCH1-209ENST00000509277 MYO1FO00160 1098 aa9.52□□□□□ -0.89
LIMCH1-209ENST00000509277 ZSCAN12O43309 604 aa9.52□□□□□ -0.89
LIMCH1-209ENST00000509277 FAM13AO94988 1023 aa9.52□□□□□ -0.89
LIMCH1-209ENST00000509277 ALDH1A1P00352 501 aa9.52□□□□□ -0.89
LIMCH1-209ENST00000509277 BCRP11274 1271 aa9.52□□□□□ -0.89
LIMCH1-209ENST00000509277 GBP2P32456 591 aaPredicted RBP9.52□□□□□ -0.89
LIMCH1-209ENST00000509277 PRPHP41219 470 aa9.52□□□□□ -0.89
LIMCH1-209ENST00000509277 CLNS1AP54105 237 aaKnown RBP9.52□□□□□ -0.89
LIMCH1-209ENST00000509277 FANCCQ00597 558 aa9.52□□□□□ -0.89
LIMCH1-209ENST00000509277 ACVR2BQ13705 512 aa9.52□□□□□ -0.89
LIMCH1-209ENST00000509277 MTF1Q14872 753 aa9.52□□□□□ -0.89
LIMCH1-209ENST00000509277 MYCT1Q8N699 235 aa9.52□□□□□ -0.89
LIMCH1-209ENST00000509277 SH3TC2Q8TF17 1288 aa9.52□□□□□ -0.89
LIMCH1-209ENST00000509277 LRRC15Q8TF66 581 aa9.52□□□□□ -0.89
LIMCH1-209ENST00000509277 GTF3C2Q8WUA4 911 aaPredicted RBP9.52□□□□□ -0.89
LIMCH1-209ENST00000509277 ATRIPQ8WXE1 791 aa9.52□□□□□ -0.89
LIMCH1-209ENST00000509277 TBC1D22BQ9NU19 505 aa9.52□□□□□ -0.89
LIMCH1-209ENST00000509277 FANCLQ9NW38 375 aa9.52□□□□□ -0.89
LIMCH1-209ENST00000509277 PCDHA10Q9Y5I2 948 aa9.52□□□□□ -0.89
LIMCH1-209ENST00000509277 RASSF10A6NK89 507 aa9.51□□□□□ -0.89
LIMCH1-209ENST00000509277 ENC1O14682 589 aa9.51□□□□□ -0.89
LIMCH1-209ENST00000509277 ACTN4O43707 911 aaKnown RBP9.51□□□□□ -0.89
LIMCH1-209ENST00000509277 TADA3O75528 432 aa9.51□□□□□ -0.89
LIMCH1-209ENST00000509277 PSMD10O75832 226 aa9.51□□□□□ -0.89
LIMCH1-209ENST00000509277 CYP3A4P08684 503 aa9.51□□□□□ -0.89
LIMCH1-209ENST00000509277 HARSP12081 509 aaKnown RBP9.51□□□□□ -0.89
LIMCH1-209ENST00000509277 CIITAP33076 1130 aa9.51□□□□□ -0.89
LIMCH1-209ENST00000509277 COPB2P35606 906 aa9.51□□□□□ -0.89
LIMCH1-209ENST00000509277 FXR2P51116 673 aaKnown RBP eCLIP9.51□□□□□ -0.89
LIMCH1-209ENST00000509277 TNFAIP2Q03169 654 aa9.51□□□□□ -0.89
LIMCH1-209ENST00000509277 HDXQ7Z353 690 aa9.51□□□□□ -0.89
LIMCH1-209ENST00000509277 CCDC60Q8IWA6 550 aaPredicted RBP9.51□□□□□ -0.89
LIMCH1-209ENST00000509277 IGSF22Q8N9C0 903 aa9.51□□□□□ -0.89
LIMCH1-209ENST00000509277 SCFD2Q8WU76 684 aa9.51□□□□□ -0.89
LIMCH1-209ENST00000509277 ZNF296Q8WUU4 475 aaPredicted RBP9.51□□□□□ -0.89
LIMCH1-209ENST00000509277 EXOC4Q96A65 974 aa9.51□□□□□ -0.89
LIMCH1-209ENST00000509277 CDHR1Q96JP9 859 aa9.51□□□□□ -0.89
LIMCH1-209ENST00000509277 AK8Q96MA6 479 aa9.51□□□□□ -0.89
LIMCH1-209ENST00000509277 WRAP73Q9P2S5 460 aaPredicted RBP9.51□□□□□ -0.89
LIMCH1-209ENST00000509277 CTNND2Q9UQB3 1225 aa9.51□□□□□ -0.89
LIMCH1-209ENST00000509277 USP20Q9Y2K6 914 aa9.51□□□□□ -0.89
LIMCH1-209ENST00000509277 FAM170AA1A519 330 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms