RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 MYCLP12524 364 aaPredicted RBP18.63■□□□□ 0.57
LDLR-206ENST00000557958 GOLGA8FQ08AF8 430 aa18.63■□□□□ 0.57
LDLR-206ENST00000557958 GOLGA8DPQ0D2H9 430 aa18.63■□□□□ 0.57
LDLR-206ENST00000557958 TBC1D8BQ0IIM8 1120 aa18.63■□□□□ 0.57
LDLR-206ENST00000557958 LRRC41Q15345 812 aa18.63■□□□□ 0.57
LDLR-206ENST00000557958 TSR1Q2NL82 804 aaKnown RBP18.63■□□□□ 0.57
LDLR-206ENST00000557958 CEP135Q66GS9 1140 aa18.63■□□□□ 0.57
LDLR-206ENST00000557958 ZNF507Q8TCN5 953 aa18.63■□□□□ 0.57
LDLR-206ENST00000557958 NSUN6Q8TEA1 469 aaKnown RBP18.63■□□□□ 0.57
LDLR-206ENST00000557958 CPLX3Q8WVH0 158 aa18.63■□□□□ 0.57
LDLR-206ENST00000557958 PPP1R13BQ96KQ4 1090 aa18.63■□□□□ 0.57
LDLR-206ENST00000557958 PTPN18Q99952 460 aa18.63■□□□□ 0.57
LDLR-206ENST00000557958 LXNQ9BS40 222 aa18.63■□□□□ 0.57
LDLR-206ENST00000557958 MOV10L1Q9BXT6 1211 aaKnown RBP18.63■□□□□ 0.57
LDLR-206ENST00000557958 LOC285556D6RIA3 1793 aa18.62■□□□□ 0.57
LDLR-206ENST00000557958 USP27XA6NNY8 438 aa18.62■□□□□ 0.57
LDLR-206ENST00000557958 B4DLN1 442 aa18.62■□□□□ 0.57
LDLR-206ENST00000557958 P4HBP07237 508 aaKnown RBP18.62■□□□□ 0.57
LDLR-206ENST00000557958 ERCC3P19447 782 aa18.62■□□□□ 0.57
LDLR-206ENST00000557958 MRPS9P82933 396 aaKnown RBP18.62■□□□□ 0.57
LDLR-206ENST00000557958 CACNB1Q02641 598 aaPredicted RBP18.62■□□□□ 0.57
LDLR-206ENST00000557958 MAN2A1Q16706 1144 aa18.62■□□□□ 0.57
LDLR-206ENST00000557958 EDRF1Q3B7T1 1238 aa18.62■□□□□ 0.57
LDLR-206ENST00000557958 ZCWPW2Q504Y3 356 aa18.62■□□□□ 0.57
LDLR-206ENST00000557958 ANKRD23Q86SG2 305 aa18.62■□□□□ 0.57
LDLR-206ENST00000557958 NLRX1Q86UT6 975 aa18.62■□□□□ 0.57
LDLR-206ENST00000557958 RIOX2Q8IUF8 465 aa18.62■□□□□ 0.57
LDLR-206ENST00000557958 ANKRD13CQ8N6S4 541 aa18.62■□□□□ 0.57
LDLR-206ENST00000557958 ZSWIM4Q9H7M6 989 aa18.62■□□□□ 0.57
LDLR-206ENST00000557958 A1CFQ9NQ94 594 aaKnown RBP18.62■□□□□ 0.57
LDLR-206ENST00000557958 OLFML3Q9NRN5 406 aa18.62■□□□□ 0.57
LDLR-206ENST00000557958 TBC1D7Q9P0N9 293 aa18.62■□□□□ 0.57
LDLR-206ENST00000557958 SEL1LQ9UBV2 794 aa18.62■□□□□ 0.57
LDLR-206ENST00000557958 TLL2Q9Y6L7 1015 aa18.62■□□□□ 0.57
LDLR-206ENST00000557958 TMEM88BA6NKF7 163 aa18.61■□□□□ 0.57
LDLR-206ENST00000557958 STAM2O75886 525 aa18.61■□□□□ 0.57
LDLR-206ENST00000557958 ECM2O94769 699 aaPredicted RBP18.61■□□□□ 0.57
LDLR-206ENST00000557958 FAM13AO94988 1023 aa18.61■□□□□ 0.57
LDLR-206ENST00000557958 JAK3P52333 1124 aa18.61■□□□□ 0.57
LDLR-206ENST00000557958 RINT1Q6NUQ1 792 aa18.61■□□□□ 0.57
LDLR-206ENST00000557958 LRRC55Q6ZSA7 311 aa18.61■□□□□ 0.57
LDLR-206ENST00000557958 STXBP4Q6ZWJ1 553 aa18.61■□□□□ 0.57
LDLR-206ENST00000557958 SFR1Q86XK3 245 aa18.61■□□□□ 0.57
LDLR-206ENST00000557958 CHST13Q8NET6 341 aa18.61■□□□□ 0.57
LDLR-206ENST00000557958 PIGOQ8TEQ8 1089 aa18.61■□□□□ 0.57
LDLR-206ENST00000557958 GPRASP2Q96D09 838 aa18.61■□□□□ 0.57
LDLR-206ENST00000557958 RUSC1Q9BVN2 902 aa18.61■□□□□ 0.57
LDLR-206ENST00000557958 R3HDMLQ9H3Y0 253 aa18.61■□□□□ 0.57
LDLR-206ENST00000557958 ODF2LQ9ULJ1 636 aa18.61■□□□□ 0.57
LDLR-206ENST00000557958 TRPM7Q96QT4 1865 aa18.61■□□□□ 0.57
LDLR-206ENST00000557958 ARHGEF35A5YM69 484 aa18.6■□□□□ 0.57
LDLR-206ENST00000557958 SFNP31947 248 aa18.6■□□□□ 0.57
LDLR-206ENST00000557958 KRT76Q01546 638 aa18.6■□□□□ 0.57
LDLR-206ENST00000557958 MTERF4Q7Z6M4 381 aaKnown RBP18.6■□□□□ 0.57
LDLR-206ENST00000557958 SCFD1Q8WVM8 642 aa18.6■□□□□ 0.57
LDLR-206ENST00000557958 CDHR1Q96JP9 859 aa18.6■□□□□ 0.57
LDLR-206ENST00000557958 CYP39A1Q9NYL5 469 aa18.6■□□□□ 0.57
LDLR-206ENST00000557958 LUC7L2Q9Y383 392 aaKnown RBP18.6■□□□□ 0.57
LDLR-206ENST00000557958 SAMM50Q9Y512 469 aa18.6■□□□□ 0.57
LDLR-206ENST00000557958 TESPA1A2RU30 521 aaPredicted RBP18.6■□□□□ 0.57
LDLR-206ENST00000557958 DDX39AO00148 427 aaKnown RBP18.6■□□□□ 0.57
LDLR-206ENST00000557958 CCDC40Q4G0X9 1142 aa18.6■□□□□ 0.57
LDLR-206ENST00000557958 VWA3BQ502W6 1294 aa18.6■□□□□ 0.57
LDLR-206ENST00000557958 TMTC1Q8IUR5 882 aa18.6■□□□□ 0.57
LDLR-206ENST00000557958 RDM1Q8NG50 284 aa18.6■□□□□ 0.57
LDLR-206ENST00000557958 ERGIC2Q96RQ1 377 aa18.6■□□□□ 0.57
LDLR-206ENST00000557958 MRPL44Q9H9J2 332 aaKnown RBP18.6■□□□□ 0.57
LDLR-206ENST00000557958 ABHD10Q9NUJ1 306 aa18.6■□□□□ 0.57
LDLR-206ENST00000557958 PKD2L1Q9P0L9 805 aa18.6■□□□□ 0.57
LDLR-206ENST00000557958 FBXO40Q9UH90 709 aa18.6■□□□□ 0.57
LDLR-206ENST00000557958 DHX15O43143 795 aaKnown RBP18.59■□□□□ 0.57
LDLR-206ENST00000557958 NR3C2P08235 984 aa18.59■□□□□ 0.57
LDLR-206ENST00000557958 TRIM21P19474 475 aaKnown RBP18.59■□□□□ 0.57
LDLR-206ENST00000557958 FECHP22830 423 aa18.59■□□□□ 0.57
LDLR-206ENST00000557958 FXR1P51114 621 aaKnown RBP eCLIP18.59■□□□□ 0.57
LDLR-206ENST00000557958 ERVK-9P63128 1117 aa18.59■□□□□ 0.57
LDLR-206ENST00000557958 ERVK-24P63145 666 aa18.59■□□□□ 0.57
LDLR-206ENST00000557958 KNOP1Q1ED39 458 aaKnown RBP18.59■□□□□ 0.57
LDLR-206ENST00000557958 C1orf186Q6ZWK4 172 aa18.59■□□□□ 0.57
LDLR-206ENST00000557958 VSIG10LQ86VR7 867 aa18.59■□□□□ 0.57
LDLR-206ENST00000557958 NELFCDQ8IXH7 590 aa18.59■□□□□ 0.57
LDLR-206ENST00000557958 GLIS3Q8NEA6 775 aa18.59■□□□□ 0.57
LDLR-206ENST00000557958 KIF18AQ8NI77 898 aa18.59■□□□□ 0.57
LDLR-206ENST00000557958 EEF2KMTQ96G04 330 aa18.59■□□□□ 0.57
LDLR-206ENST00000557958 PCMTD1Q96MG8 357 aaPredicted RBP18.59■□□□□ 0.57
LDLR-206ENST00000557958 NDST4Q9H3R1 872 aa18.59■□□□□ 0.57
LDLR-206ENST00000557958 PARVGQ9HBI0 331 aa18.59■□□□□ 0.57
LDLR-206ENST00000557958 PPP2R2CQ9Y2T4 447 aa18.59■□□□□ 0.57
LDLR-206ENST00000557958 LOXHD1Q8IVV2 1947 aa18.59■□□□□ 0.57
LDLR-206ENST00000557958 WDR64B1ANS9 1081 aa18.58■□□□□ 0.57
LDLR-206ENST00000557958 CETN3O15182 167 aa18.58■□□□□ 0.57
LDLR-206ENST00000557958 EIF3DO15371 548 aaKnown RBP eCLIP18.58■□□□□ 0.57
LDLR-206ENST00000557958 CALUO43852 315 aaPredicted RBP18.58■□□□□ 0.57
LDLR-206ENST00000557958 KRT9P35527 623 aa18.58■□□□□ 0.57
LDLR-206ENST00000557958 QARSP47897 775 aaKnown RBP18.58■□□□□ 0.57
LDLR-206ENST00000557958 ITGB3BPQ13352 177 aaPredicted RBP18.58■□□□□ 0.57
LDLR-206ENST00000557958 BMT2Q1RMZ1 405 aa18.58■□□□□ 0.57
LDLR-206ENST00000557958 FIGNQ5HY92 759 aa18.58■□□□□ 0.57
LDLR-206ENST00000557958 MIIPQ5JXC2 388 aa18.58■□□□□ 0.57
LDLR-206ENST00000557958 CYP26C1Q6V0L0 522 aa18.58■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms