RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 BRI3BPQ8WY22 251 aa15.27■□□□□ 0.03
PTPRF-202ENST00000372405 SH2D3AQ9BRG2 576 aa15.27■□□□□ 0.03
PTPRF-202ENST00000372405 TUBGCP2Q9BSJ2 902 aa15.27■□□□□ 0.03
PTPRF-202ENST00000372405 TMX1Q9H3N1 280 aa15.27■□□□□ 0.03
PTPRF-202ENST00000372405 KCND2Q9NZV8 630 aa15.27■□□□□ 0.03
PTPRF-202ENST00000372405 DBR1Q9UK59 544 aaKnown RBP15.27■□□□□ 0.03
PTPRF-202ENST00000372405 COL4A3BPQ9Y5P4 624 aa15.27■□□□□ 0.03
PTPRF-202ENST00000372405 ARID2Q68CP9 1835 aa15.27■□□□□ 0.03
PTPRF-202ENST00000372405 BTBD19C9JJ37 291 aa15.26■□□□□ 0.03
PTPRF-202ENST00000372405 GUCY2CP25092 1073 aa15.26■□□□□ 0.03
PTPRF-202ENST00000372405 ICAM3P32942 547 aa15.26■□□□□ 0.03
PTPRF-202ENST00000372405 ERVK-9P63128 1117 aa15.26■□□□□ 0.03
PTPRF-202ENST00000372405 ERVK-24P63145 666 aa15.26■□□□□ 0.03
PTPRF-202ENST00000372405 CST9Q5W186 159 aa15.26■□□□□ 0.03
PTPRF-202ENST00000372405 TMEM139Q8IV31 216 aa15.26■□□□□ 0.03
PTPRF-202ENST00000372405 C4orf19Q8IY42 314 aa15.26■□□□□ 0.03
PTPRF-202ENST00000372405 CDHR1Q96JP9 859 aa15.26■□□□□ 0.03
PTPRF-202ENST00000372405 JPH1Q9HDC5 661 aaPredicted RBP15.26■□□□□ 0.03
PTPRF-202ENST00000372405 OLFML3Q9NRN5 406 aa15.26■□□□□ 0.03
PTPRF-202ENST00000372405 MAGEC2Q9UBF1 373 aaPredicted RBP15.26■□□□□ 0.03
PTPRF-202ENST00000372405 PCDHA10Q9Y5I2 948 aa15.26■□□□□ 0.03
PTPRF-202ENST00000372405 ITIH6Q6UXX5 1313 aa15.26■□□□□ 0.03
PTPRF-202ENST00000372405 DNAJC25-GNG10A0A024R161 153 aa15.25■□□□□ 0.03
PTPRF-202ENST00000372405 ARHGEF35A5YM69 484 aa15.25■□□□□ 0.03
PTPRF-202ENST00000372405 PDHXO00330 501 aa15.25■□□□□ 0.03
PTPRF-202ENST00000372405 SOCS7O14512 581 aa15.25■□□□□ 0.03
PTPRF-202ENST00000372405 SORBS3O60504 671 aa15.25■□□□□ 0.03
PTPRF-202ENST00000372405 YWHABP31946 246 aaKnown RBP15.25■□□□□ 0.03
PTPRF-202ENST00000372405 ADKP55263 362 aaKnown RBP15.25■□□□□ 0.03
PTPRF-202ENST00000372405 PSMC5P62195 406 aa15.25■□□□□ 0.03
PTPRF-202ENST00000372405 KCNA1Q09470 495 aa15.25■□□□□ 0.03
PTPRF-202ENST00000372405 BMT2Q1RMZ1 405 aa15.25■□□□□ 0.03
PTPRF-202ENST00000372405 GNPTABQ3T906 1256 aa15.25■□□□□ 0.03
PTPRF-202ENST00000372405 PADI6Q6TGC4 694 aa15.25■□□□□ 0.03
PTPRF-202ENST00000372405 RDM1Q8NG50 284 aa15.25■□□□□ 0.03
PTPRF-202ENST00000372405 PORCNQ9H237 461 aa15.25■□□□□ 0.03
PTPRF-202ENST00000372405 MYH9P35579 1960 aaKnown RBP15.25■□□□□ 0.03
PTPRF-202ENST00000372405 TRPM7Q96QT4 1865 aa15.25■□□□□ 0.03
PTPRF-202ENST00000372405 CCL15-CCL14A0A0B4J2E2 113 aa15.25■□□□□ 0.03
PTPRF-202ENST00000372405 B4DLN1 442 aa15.25■□□□□ 0.03
PTPRF-202ENST00000372405 ZNF862O60290 1169 aa15.25■□□□□ 0.03
PTPRF-202ENST00000372405 HIP1RO75146 1068 aa15.25■□□□□ 0.03
PTPRF-202ENST00000372405 PRPF6O94906 941 aaKnown RBP15.25■□□□□ 0.03
PTPRF-202ENST00000372405 FAM13AO94988 1023 aa15.25■□□□□ 0.03
PTPRF-202ENST00000372405 STBD1O95210 358 aa15.25■□□□□ 0.03
PTPRF-202ENST00000372405 GYPCP04921 128 aa15.25■□□□□ 0.03
PTPRF-202ENST00000372405 CETPP11597 493 aa15.25■□□□□ 0.03
PTPRF-202ENST00000372405 GAP43P17677 238 aa15.25■□□□□ 0.03
PTPRF-202ENST00000372405 NMT1P30419 496 aaKnown RBP15.25■□□□□ 0.03
PTPRF-202ENST00000372405 GTF2A2P52657 109 aa15.25■□□□□ 0.03
PTPRF-202ENST00000372405 UBXN1Q04323 297 aa15.25■□□□□ 0.03
PTPRF-202ENST00000372405 RBL2Q08999 1139 aa15.25■□□□□ 0.03
PTPRF-202ENST00000372405 CCL15Q16663 113 aa15.25■□□□□ 0.03
PTPRF-202ENST00000372405 UTP14CQ5TAP6 766 aaKnown RBP15.25■□□□□ 0.03
PTPRF-202ENST00000372405 SEPT14Q6ZU15 432 aa15.25■□□□□ 0.03
PTPRF-202ENST00000372405 FAM114A1Q8IWE2 563 aa15.25■□□□□ 0.03
PTPRF-202ENST00000372405 ZC3H3Q8IXZ2 948 aaKnown RBP15.25■□□□□ 0.03
PTPRF-202ENST00000372405 ZNF526Q8TF50 670 aaPredicted RBP15.25■□□□□ 0.03
PTPRF-202ENST00000372405 MRPL44Q9H9J2 332 aaKnown RBP15.25■□□□□ 0.03
PTPRF-202ENST00000372405 PARVGQ9HBI0 331 aa15.25■□□□□ 0.03
PTPRF-202ENST00000372405 SLC9A2Q9UBY0 812 aa15.25■□□□□ 0.03
PTPRF-202ENST00000372405 ODF2LQ9ULJ1 636 aa15.25■□□□□ 0.03
PTPRF-202ENST00000372405 RNF225M0QZC1 329 aaPredicted RBP15.24■□□□□ 0.03
PTPRF-202ENST00000372405 BACH1O14867 736 aa15.24■□□□□ 0.03
PTPRF-202ENST00000372405 ITGBL1O95965 494 aaPredicted RBP15.24■□□□□ 0.03
PTPRF-202ENST00000372405 PRKCSHP14314 528 aaPredicted RBP15.24■□□□□ 0.03
PTPRF-202ENST00000372405 ACTR2P61160 394 aa15.24■□□□□ 0.03
PTPRF-202ENST00000372405 FKBP3Q00688 224 aaKnown RBP15.24■□□□□ 0.03
PTPRF-202ENST00000372405 SP4Q02446 784 aa15.24■□□□□ 0.03
PTPRF-202ENST00000372405 SPRYD7Q5W111 196 aa15.24■□□□□ 0.03
PTPRF-202ENST00000372405 PLA2G4FQ68DD2 849 aa15.24■□□□□ 0.03
PTPRF-202ENST00000372405 ABHD15Q6UXT9 468 aa15.24■□□□□ 0.03
PTPRF-202ENST00000372405 ANO5Q75V66 913 aa15.24■□□□□ 0.03
PTPRF-202ENST00000372405 SMAP1Q8IYB5 467 aaPredicted RBP15.24■□□□□ 0.03
PTPRF-202ENST00000372405 MYCT1Q8N699 235 aa15.24■□□□□ 0.03
PTPRF-202ENST00000372405 C2orf69Q8N8R5 385 aa15.24■□□□□ 0.03
PTPRF-202ENST00000372405 TSG101Q99816 390 aa15.24■□□□□ 0.03
PTPRF-202ENST00000372405 EFCC1Q9HA90 598 aa15.24■□□□□ 0.03
PTPRF-202ENST00000372405 PNMA3Q9UL41 463 aa15.24■□□□□ 0.03
PTPRF-202ENST00000372405 PLXNB2O15031 1838 aa15.24■□□□□ 0.03
PTPRF-202ENST00000372405 GCNT3O95395 438 aa15.24■□□□□ 0.03
PTPRF-202ENST00000372405 COPB2P35606 906 aa15.24■□□□□ 0.03
PTPRF-202ENST00000372405 MTIF2P46199 727 aaKnown RBP15.24■□□□□ 0.03
PTPRF-202ENST00000372405 FXR1P51114 621 aaKnown RBP eCLIP15.24■□□□□ 0.03
PTPRF-202ENST00000372405 NPEPPSP55786 919 aa15.24■□□□□ 0.03
PTPRF-202ENST00000372405 KNOP1Q1ED39 458 aaKnown RBP15.24■□□□□ 0.03
PTPRF-202ENST00000372405 ZC2HC1CQ53FD0 456 aaPredicted RBP15.24■□□□□ 0.03
PTPRF-202ENST00000372405 CYFIP1Q7L576 1253 aa15.24■□□□□ 0.03
PTPRF-202ENST00000372405 TRMT1LQ7Z2T5 733 aaKnown RBP15.24■□□□□ 0.03
PTPRF-202ENST00000372405 CCDC60Q8IWA6 550 aaPredicted RBP15.24■□□□□ 0.03
PTPRF-202ENST00000372405 MMP19Q99542 508 aa15.24■□□□□ 0.03
PTPRF-202ENST00000372405 PTPN18Q99952 460 aa15.24■□□□□ 0.03
PTPRF-202ENST00000372405 IKZF4Q9H2S9 585 aa15.24■□□□□ 0.03
PTPRF-202ENST00000372405 MROH8Q9H579 483 aa15.24■□□□□ 0.03
PTPRF-202ENST00000372405 GABBR1Q9UBS5 961 aa15.24■□□□□ 0.03
PTPRF-202ENST00000372405 TCEAL9Q9UHQ7 104 aa15.24■□□□□ 0.03
PTPRF-202ENST00000372405 SLC45A1Q9Y2W3 748 aa15.24■□□□□ 0.03
PTPRF-202ENST00000372405 ZMYM2Q9UBW7 1377 aa15.23■□□□□ 0.03
PTPRF-202ENST00000372405 PLXNA1Q9UIW2 1896 aa15.23■□□□□ 0.03
PTPRF-202ENST00000372405 USP27XA6NNY8 438 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms