RNA–Protein interactions for RNA: ENST00000600733.5

SHKBP1-225, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5 BASIC

Gene SHKBP1, Length 2,284 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-225ENST00000600733 SFR1Q86XK3 245 aa22.23■■□□□ 1.15
SHKBP1-225ENST00000600733 CRYGNQ8WXF5 182 aa22.23■■□□□ 1.15
SHKBP1-225ENST00000600733 REEP2Q9BRK0 252 aa22.23■■□□□ 1.15
SHKBP1-225ENST00000600733 EHD4Q9H223 541 aa22.23■■□□□ 1.15
SHKBP1-225ENST00000600733 POLD4Q9HCU8 107 aa22.23■■□□□ 1.15
SHKBP1-225ENST00000600733 RSPH14Q9UHP6 348 aa22.23■■□□□ 1.15
SHKBP1-225ENST00000600733 PCDHGC5Q9Y5F6 944 aa22.23■■□□□ 1.15
SHKBP1-225ENST00000600733 DDTLA6NHG4 134 aaPredicted RBP22.22■■□□□ 1.15
SHKBP1-225ENST00000600733 SPATA31C1P0DKV0 1188 aa22.22■■□□□ 1.15
SHKBP1-225ENST00000600733 RNASE9P60153 205 aaKnown RBP22.22■■□□□ 1.15
SHKBP1-225ENST00000600733 USH1GQ495M9 461 aa22.22■■□□□ 1.15
SHKBP1-225ENST00000600733 EMBQ6PCB8 327 aa22.22■■□□□ 1.15
SHKBP1-225ENST00000600733 PPP4R3CPQ6ZMV5 832 aa22.22■■□□□ 1.15
SHKBP1-225ENST00000600733 C10orf67Q8IYJ2 551 aa22.22■■□□□ 1.15
SHKBP1-225ENST00000600733 SIPA1L1O43166 1804 aa22.22■■□□□ 1.15
SHKBP1-225ENST00000600733 ESYT3A0FGR9 886 aa22.22■■□□□ 1.15
SHKBP1-225ENST00000600733 PTK2Q05397 1052 aa22.22■■□□□ 1.15
SHKBP1-225ENST00000600733 CERKLQ49MI3 558 aaPredicted RBP22.22■■□□□ 1.15
SHKBP1-225ENST00000600733 MEI1Q5TIA1 1274 aa22.22■■□□□ 1.15
SHKBP1-225ENST00000600733 SIAH1Q8IUQ4 282 aa22.22■■□□□ 1.15
SHKBP1-225ENST00000600733 LENG9Q96B70 501 aa22.22■■□□□ 1.15
SHKBP1-225ENST00000600733 BCAS3Q9H6U6 928 aa22.22■■□□□ 1.15
SHKBP1-225ENST00000600733 ANKRD31Q8N7Z5 1873 aa22.21■■□□□ 1.15
SHKBP1-225ENST00000600733 FAM86B1E9PN63 330 aa22.21■■□□□ 1.15
SHKBP1-225ENST00000600733 G3V3G9 751 aa22.21■■□□□ 1.15
SHKBP1-225ENST00000600733 FAM86B2P0C5J1 330 aa22.21■■□□□ 1.15
SHKBP1-225ENST00000600733 MYBP10242 640 aa22.21■■□□□ 1.15
SHKBP1-225ENST00000600733 SKIDA1Q1XH10 827 aa22.21■■□□□ 1.15
SHKBP1-225ENST00000600733 DCAF8Q5TAQ9 597 aa22.21■■□□□ 1.15
SHKBP1-225ENST00000600733 DNAAF5Q86Y56 855 aa22.21■■□□□ 1.15
SHKBP1-225ENST00000600733 DCAF4Q8WV16 495 aa22.21■■□□□ 1.15
SHKBP1-225ENST00000600733 GRID2IPA4D2P6 1211 aa22.2■■□□□ 1.15
SHKBP1-225ENST00000600733 UBAP1LF5GYI3 381 aa22.2■■□□□ 1.15
SHKBP1-225ENST00000600733 TNFRSF8P28908 595 aa22.2■■□□□ 1.15
SHKBP1-225ENST00000600733 CARSP49589 748 aaKnown RBP22.2■■□□□ 1.15
SHKBP1-225ENST00000600733 AP3B2Q13367 1082 aa22.2■■□□□ 1.15
SHKBP1-225ENST00000600733 KNOP1Q1ED39 458 aaKnown RBP22.2■■□□□ 1.15
SHKBP1-225ENST00000600733 DPY19L2P1Q6NXN4 242 aa22.2■■□□□ 1.15
SHKBP1-225ENST00000600733 SEPT12Q8IYM1 358 aa22.2■■□□□ 1.15
SHKBP1-225ENST00000600733 MKL1Q969V6 931 aa22.2■■□□□ 1.15
SHKBP1-225ENST00000600733 SH3GL2Q99962 352 aa22.2■■□□□ 1.15
SHKBP1-225ENST00000600733 DBNDD1Q9H9R9 158 aa22.2■■□□□ 1.15
SHKBP1-225ENST00000600733 ARMCX3Q9UH62 379 aaPredicted RBP22.2■■□□□ 1.15
SHKBP1-225ENST00000600733 DNM3Q9UQ16 869 aa22.2■■□□□ 1.15
SHKBP1-225ENST00000600733 RSPH10B2B2RC85 870 aa22.2■■□□□ 1.14
SHKBP1-225ENST00000600733 RSPH10BP0C881 870 aa22.2■■□□□ 1.14
SHKBP1-225ENST00000600733 CYP4A11Q02928 519 aa22.2■■□□□ 1.14
SHKBP1-225ENST00000600733 GLE1Q53GS7 698 aaKnown RBP22.2■■□□□ 1.14
SHKBP1-225ENST00000600733 KIAA0825Q8IV33 1275 aa22.2■■□□□ 1.14
SHKBP1-225ENST00000600733 CAVIN3Q969G5 261 aa22.2■■□□□ 1.14
SHKBP1-225ENST00000600733 NYAP2Q9P242 653 aa22.2■■□□□ 1.14
SHKBP1-225ENST00000600733 RNF14Q9UBS8 474 aa22.2■■□□□ 1.14
SHKBP1-225ENST00000600733 NFU1Q9UMS0 254 aa22.2■■□□□ 1.14
SHKBP1-225ENST00000600733 HEXIM1O94992 359 aaKnown RBP22.19■■□□□ 1.14
SHKBP1-225ENST00000600733 UCHL3P15374 230 aa22.19■■□□□ 1.14
SHKBP1-225ENST00000600733 RPA1P27694 616 aa22.19■■□□□ 1.14
SHKBP1-225ENST00000600733 GUCY2DQ02846 1103 aa22.19■■□□□ 1.14
SHKBP1-225ENST00000600733 MOXD1Q6UVY6 613 aa22.19■■□□□ 1.14
SHKBP1-225ENST00000600733 ZNF571Q7Z3V5 609 aaPredicted RBP22.19■■□□□ 1.14
SHKBP1-225ENST00000600733 IRF2BP2Q7Z5L9 587 aa22.19■■□□□ 1.14
SHKBP1-225ENST00000600733 SYT2Q8N9I0 419 aaPredicted RBP22.19■■□□□ 1.14
SHKBP1-225ENST00000600733 INPP4AQ96PE3 977 aaPredicted RBP22.19■■□□□ 1.14
SHKBP1-225ENST00000600733 GOLPH3Q9H4A6 298 aa22.19■■□□□ 1.14
SHKBP1-225ENST00000600733 EPB41L5Q9HCM4 733 aa22.19■■□□□ 1.14
SHKBP1-225ENST00000600733 TMEM51Q9NW97 253 aa22.19■■□□□ 1.14
SHKBP1-225ENST00000600733 TRAF3IP3Q9Y228 551 aa22.19■■□□□ 1.14
SHKBP1-225ENST00000600733 SLC26A4O43511 780 aa22.19■■□□□ 1.14
SHKBP1-225ENST00000600733 SHOX2O60902 331 aaPredicted RBP22.19■■□□□ 1.14
SHKBP1-225ENST00000600733 FAM153BP0C7A2 387 aa22.19■■□□□ 1.14
SHKBP1-225ENST00000600733 FAM153CQ494X1 144 aa22.19■■□□□ 1.14
SHKBP1-225ENST00000600733 DCAF17Q5H9S7 520 aaPredicted RBP22.19■■□□□ 1.14
SHKBP1-225ENST00000600733 SH3BP5LQ7L8J4 393 aa22.19■■□□□ 1.14
SHKBP1-225ENST00000600733 ERMNQ8TAM6 284 aa22.19■■□□□ 1.14
SHKBP1-225ENST00000600733 CYP2W1Q8TAV3 490 aa22.19■■□□□ 1.14
SHKBP1-225ENST00000600733 IFT81Q8WYA0 676 aa22.19■■□□□ 1.14
SHKBP1-225ENST00000600733 SPAG5Q96R06 1193 aa22.19■■□□□ 1.14
SHKBP1-225ENST00000600733 KRT12Q99456 494 aa22.19■■□□□ 1.14
SHKBP1-225ENST00000600733 AMNQ9BXJ7 453 aa22.19■■□□□ 1.14
SHKBP1-225ENST00000600733 FAM153AQ9UHL3 310 aa22.19■■□□□ 1.14
SHKBP1-225ENST00000600733 PPFIA4O75335 1185 aa22.18■■□□□ 1.14
SHKBP1-225ENST00000600733 AKAP3O75969 853 aa22.18■■□□□ 1.14
SHKBP1-225ENST00000600733 GDF11O95390 407 aa22.18■■□□□ 1.14
SHKBP1-225ENST00000600733 AFPP02771 609 aaKnown RBP22.18■■□□□ 1.14
SHKBP1-225ENST00000600733 ICA1Q05084 483 aa22.18■■□□□ 1.14
SHKBP1-225ENST00000600733 EPM2AIP1Q7L775 607 aaPredicted RBP22.18■■□□□ 1.14
SHKBP1-225ENST00000600733 FRMD5Q7Z6J6 570 aa22.18■■□□□ 1.14
SHKBP1-225ENST00000600733 IFT20Q8IY31 132 aa22.18■■□□□ 1.14
SHKBP1-225ENST00000600733 ARL8AQ96BM9 186 aa22.18■■□□□ 1.14
SHKBP1-225ENST00000600733 GDF3Q9NR23 364 aa22.18■■□□□ 1.14
SHKBP1-225ENST00000600733 FAM198AQ9UFP1 575 aa22.18■■□□□ 1.14
SHKBP1-225ENST00000600733 F5H6K3 240 aa22.18■■□□□ 1.14
SHKBP1-225ENST00000600733 PON1P27169 355 aa22.18■■□□□ 1.14
SHKBP1-225ENST00000600733 HOXA13P31271 388 aaPredicted RBP22.18■■□□□ 1.14
SHKBP1-225ENST00000600733 KLRC3Q07444 240 aa22.18■■□□□ 1.14
SHKBP1-225ENST00000600733 IKQ13123 557 aaPredicted RBP22.18■■□□□ 1.14
SHKBP1-225ENST00000600733 EXOC3L4Q17RC7 722 aa22.18■■□□□ 1.14
SHKBP1-225ENST00000600733 Q4G0T1 1027 aa22.18■■□□□ 1.14
SHKBP1-225ENST00000600733 RBM46Q8TBY0 533 aaKnown RBP22.18■■□□□ 1.14
SHKBP1-225ENST00000600733 ZDHHC15Q96MV8 337 aa22.18■■□□□ 1.14
SHKBP1-225ENST00000600733 SPDYE3A6NKU9 549 aa22.17■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms