RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 C1QTNF8P60827 252 aa8.45□□□□□ -1.06
VPS13D-211ENST00000543710 USP17L24Q0WX57 530 aa8.45□□□□□ -1.06
VPS13D-211ENST00000543710 IRAK1BP1Q5VVH5 260 aa8.45□□□□□ -1.06
VPS13D-211ENST00000543710 RESP18Q5W5W9 173 aa8.45□□□□□ -1.06
VPS13D-211ENST00000543710 TRIM50Q86XT4 487 aa8.45□□□□□ -1.06
VPS13D-211ENST00000543710 PHKBQ93100 1093 aa8.45□□□□□ -1.06
VPS13D-211ENST00000543710 TTC1Q99614 292 aa8.45□□□□□ -1.06
VPS13D-211ENST00000543710 PACSIN2Q9UNF0 486 aaPredicted RBP8.45□□□□□ -1.06
VPS13D-211ENST00000543710 IQANK1A0A1B0GTG1 560 aa8.44□□□□□ -1.06
VPS13D-211ENST00000543710 MMP1P03956 469 aa8.44□□□□□ -1.06
VPS13D-211ENST00000543710 OATP04181 439 aa8.44□□□□□ -1.06
VPS13D-211ENST00000543710 PPARGP37231 505 aaPredicted RBP8.44□□□□□ -1.06
VPS13D-211ENST00000543710 COG7P83436 770 aa8.44□□□□□ -1.06
VPS13D-211ENST00000543710 ARHGAP4P98171 946 aa8.44□□□□□ -1.06
VPS13D-211ENST00000543710 CWF19L2Q2TBE0 894 aaKnown RBP8.44□□□□□ -1.06
VPS13D-211ENST00000543710 TSHZ3Q63HK5 1081 aa8.44□□□□□ -1.06
VPS13D-211ENST00000543710 SOCS4Q8WXH5 440 aa8.44□□□□□ -1.06
VPS13D-211ENST00000543710 CRAMP1Q96RY5 1269 aa8.44□□□□□ -1.06
VPS13D-211ENST00000543710 LRRC2Q9BYS8 371 aa8.44□□□□□ -1.06
VPS13D-211ENST00000543710 TMEM60Q9H2L4 133 aa8.44□□□□□ -1.06
VPS13D-211ENST00000543710 VPS37BQ9H9H4 285 aa8.44□□□□□ -1.06
VPS13D-211ENST00000543710 RCOR1Q9UKL0 485 aa8.44□□□□□ -1.06
VPS13D-211ENST00000543710 JAG2Q9Y219 1238 aa8.44□□□□□ -1.06
VPS13D-211ENST00000543710 CFAP73A6NFT4 308 aa8.44□□□□□ -1.06
VPS13D-211ENST00000543710 GOLGA8JA6NMD2 632 aa8.44□□□□□ -1.06
VPS13D-211ENST00000543710 ZMYND10O75800 440 aa8.44□□□□□ -1.06
VPS13D-211ENST00000543710 KRT15P19012 456 aa8.44□□□□□ -1.06
VPS13D-211ENST00000543710 ZBED6P86452 979 aa8.44□□□□□ -1.06
VPS13D-211ENST00000543710 PLCB4Q15147 1175 aa8.44□□□□□ -1.06
VPS13D-211ENST00000543710 PDCD2Q16342 344 aaPredicted RBP8.44□□□□□ -1.06
VPS13D-211ENST00000543710 CENPUQ71F23 418 aa8.44□□□□□ -1.06
VPS13D-211ENST00000543710 RRAGAQ7L523 313 aa8.44□□□□□ -1.06
VPS13D-211ENST00000543710 TTC13Q8NBP0 860 aa8.44□□□□□ -1.06
VPS13D-211ENST00000543710 AGBL3Q8NEM8 1001 aa8.44□□□□□ -1.06
VPS13D-211ENST00000543710 DHX38Q92620 1227 aaKnown RBP8.44□□□□□ -1.06
VPS13D-211ENST00000543710 RABEP2Q9H5N1 569 aa8.44□□□□□ -1.06
VPS13D-211ENST00000543710 C19orf81C9J6K1 198 aa8.44□□□□□ -1.06
VPS13D-211ENST00000543710 GAS7O60861 476 aa8.44□□□□□ -1.06
VPS13D-211ENST00000543710 GNRH1P01148 92 aa8.44□□□□□ -1.06
VPS13D-211ENST00000543710 A1BGP04217 495 aa8.44□□□□□ -1.06
VPS13D-211ENST00000543710 TXKP42681 527 aa8.44□□□□□ -1.06
VPS13D-211ENST00000543710 LIFRP42702 1097 aa8.44□□□□□ -1.06
VPS13D-211ENST00000543710 KRT71Q3SY84 523 aa8.44□□□□□ -1.06
VPS13D-211ENST00000543710 HERC4Q5GLZ8 1057 aaPredicted RBP8.44□□□□□ -1.06
VPS13D-211ENST00000543710 SLFN12LQ6IEE8 588 aa8.44□□□□□ -1.06
VPS13D-211ENST00000543710 ARHGEF1Q92888 912 aaKnown RBP8.44□□□□□ -1.06
VPS13D-211ENST00000543710 DNAJC17Q9NVM6 304 aaKnown RBP8.44□□□□□ -1.06
VPS13D-211ENST00000543710 EPN1Q9Y6I3 576 aaPredicted RBP8.44□□□□□ -1.06
VPS13D-211ENST00000543710 SYNGAP1Q96PV0 1343 aa8.44□□□□□ -1.06
VPS13D-211ENST00000543710 SLIT1O75093 1534 aa8.44□□□□□ -1.06
VPS13D-211ENST00000543710 SH2B2O14492 632 aaPredicted RBP8.44□□□□□ -1.06
VPS13D-211ENST00000543710 ATP2C2O75185 946 aa8.44□□□□□ -1.06
VPS13D-211ENST00000543710 HOXC6P09630 235 aa8.44□□□□□ -1.06
VPS13D-211ENST00000543710 CYP2B6P20813 491 aa8.44□□□□□ -1.06
VPS13D-211ENST00000543710 JAK3P52333 1124 aa8.44□□□□□ -1.06
VPS13D-211ENST00000543710 HS6ST3Q8IZP7 471 aa8.44□□□□□ -1.06
VPS13D-211ENST00000543710 GPRC5AQ8NFJ5 357 aa8.44□□□□□ -1.06
VPS13D-211ENST00000543710 USP31Q70CQ4 1352 aa8.44□□□□□ -1.06
VPS13D-211ENST00000543710 KIF1CO43896 1103 aaKnown RBP8.43□□□□□ -1.06
VPS13D-211ENST00000543710 ECEL1O95672 775 aa8.43□□□□□ -1.06
VPS13D-211ENST00000543710 PDIA3P30101 505 aaKnown RBP8.43□□□□□ -1.06
VPS13D-211ENST00000543710 CHRNA5P30532 468 aa8.43□□□□□ -1.06
VPS13D-211ENST00000543710 MECOMQ03112 1051 aa8.43□□□□□ -1.06
VPS13D-211ENST00000543710 TTLL4Q14679 1199 aa8.43□□□□□ -1.06
VPS13D-211ENST00000543710 SAMD7Q7Z3H4 446 aa8.43□□□□□ -1.06
VPS13D-211ENST00000543710 RPAINQ86UA6 219 aa8.43□□□□□ -1.06
VPS13D-211ENST00000543710 U2AF1L4Q8WU68 220 aaKnown RBP8.43□□□□□ -1.06
VPS13D-211ENST00000543710 ATP6V0A1Q93050 837 aa8.43□□□□□ -1.06
VPS13D-211ENST00000543710 VIPAS39Q9H9C1 493 aa8.43□□□□□ -1.06
VPS13D-211ENST00000543710 DDX56Q9NY93 547 aaKnown RBP8.43□□□□□ -1.06
VPS13D-211ENST00000543710 CEP72Q9P209 647 aa8.43□□□□□ -1.06
VPS13D-211ENST00000543710 ZBTB21Q9ULJ3 1066 aa8.43□□□□□ -1.06
VPS13D-211ENST00000543710 PCDHB9Q9Y5E1 797 aa8.43□□□□□ -1.06
VPS13D-211ENST00000543710 PFASO15067 1338 aa8.43□□□□□ -1.06
VPS13D-211ENST00000543710 GSPT1P15170 499 aaKnown RBP8.43□□□□□ -1.06
VPS13D-211ENST00000543710 HPDP32754 393 aaPredicted RBP8.43□□□□□ -1.06
VPS13D-211ENST00000543710 NNMTP40261 264 aa8.43□□□□□ -1.06
VPS13D-211ENST00000543710 TNFAIP2Q03169 654 aa8.43□□□□□ -1.06
VPS13D-211ENST00000543710 TYW1BQ6NUM6 668 aa8.43□□□□□ -1.06
VPS13D-211ENST00000543710 TEX9Q8N6V9 391 aa8.43□□□□□ -1.06
VPS13D-211ENST00000543710 NRBF2Q96F24 287 aa8.43□□□□□ -1.06
VPS13D-211ENST00000543710 DBNDD2Q9BQY9 259 aa8.43□□□□□ -1.06
VPS13D-211ENST00000543710 PSTPIP2Q9H939 334 aa8.43□□□□□ -1.06
VPS13D-211ENST00000543710 SLC16A3O15427 465 aaKnown RBP8.43□□□□□ -1.06
VPS13D-211ENST00000543710 GJC1P36383 396 aa8.43□□□□□ -1.06
VPS13D-211ENST00000543710 ENOSF1Q7L5Y1 443 aa8.43□□□□□ -1.06
VPS13D-211ENST00000543710 NME8Q8N427 588 aa8.43□□□□□ -1.06
VPS13D-211ENST00000543710 MB21D1Q8N884 522 aa8.43□□□□□ -1.06
VPS13D-211ENST00000543710 PHACTR3Q96KR7 559 aa8.43□□□□□ -1.06
VPS13D-211ENST00000543710 TRIM4Q9C037 500 aa8.43□□□□□ -1.06
VPS13D-211ENST00000543710 GINM1Q9NU53 330 aa8.43□□□□□ -1.06
VPS13D-211ENST00000543710 FARP1Q9Y4F1 1045 aaPredicted RBP8.43□□□□□ -1.06
VPS13D-211ENST00000543710 ITIH6Q6UXX5 1313 aa8.43□□□□□ -1.06
VPS13D-211ENST00000543710 FAM187AA6NFU0 413 aa8.43□□□□□ -1.06
VPS13D-211ENST00000543710 KRT16P08779 473 aa8.43□□□□□ -1.06
VPS13D-211ENST00000543710 SLFN14P0C7P3 912 aa8.43□□□□□ -1.06
VPS13D-211ENST00000543710 HSPD1P10809 573 aaKnown RBP8.43□□□□□ -1.06
VPS13D-211ENST00000543710 ADCY8P40145 1251 aa8.43□□□□□ -1.06
VPS13D-211ENST00000543710 RAB30Q15771 203 aa8.43□□□□□ -1.06
VPS13D-211ENST00000543710 RNF219Q5W0B1 726 aaPredicted RBP8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms