RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 NUDT12Q9BQG2 462 aa9.61□□□□□ -0.87
LIMCH1-209ENST00000509277 KCNH7Q9NS40 1196 aa9.61□□□□□ -0.87
LIMCH1-209ENST00000509277 SYNPO2Q9UMS6 1093 aa9.61□□□□□ -0.87
LIMCH1-209ENST00000509277 SUFUQ9UMX1 484 aa9.61□□□□□ -0.87
LIMCH1-209ENST00000509277 KIAA1024Q9UPX6 916 aa9.61□□□□□ -0.87
LIMCH1-209ENST00000509277 DOCK3Q8IZD9 2030 aa9.61□□□□□ -0.87
LIMCH1-209ENST00000509277 POTEFA5A3E0 1075 aa9.61□□□□□ -0.87
LIMCH1-209ENST00000509277 SLC10A3P09131 477 aa9.61□□□□□ -0.87
LIMCH1-209ENST00000509277 ITGB5P18084 799 aa9.61□□□□□ -0.87
LIMCH1-209ENST00000509277 PTPREP23469 700 aa9.61□□□□□ -0.87
LIMCH1-209ENST00000509277 CCND2P30279 289 aa9.61□□□□□ -0.87
LIMCH1-209ENST00000509277 ACTN2P35609 894 aa9.61□□□□□ -0.87
LIMCH1-209ENST00000509277 ATP2C1P98194 919 aaPredicted RBP9.61□□□□□ -0.87
LIMCH1-209ENST00000509277 FAM160A1Q05DH4 1040 aa9.61□□□□□ -0.87
LIMCH1-209ENST00000509277 POTEGQ6S5H5 508 aa9.61□□□□□ -0.87
LIMCH1-209ENST00000509277 COPS5Q92905 334 aa9.61□□□□□ -0.87
LIMCH1-209ENST00000509277 EEF2KMTQ96G04 330 aa9.61□□□□□ -0.87
LIMCH1-209ENST00000509277 MLXIPQ9HAP2 919 aa9.61□□□□□ -0.87
LIMCH1-209ENST00000509277 FBXO40Q9UH90 709 aa9.61□□□□□ -0.87
LIMCH1-209ENST00000509277 TMEM150BA6NC51 233 aa9.61□□□□□ -0.87
LIMCH1-209ENST00000509277 ATP9AO75110 1047 aa9.61□□□□□ -0.87
LIMCH1-209ENST00000509277 PSMC4P43686 418 aa9.61□□□□□ -0.87
LIMCH1-209ENST00000509277 NOP2P46087 812 aaKnown RBP9.61□□□□□ -0.87
LIMCH1-209ENST00000509277 TRAPPC10P48553 1259 aa9.61□□□□□ -0.87
LIMCH1-209ENST00000509277 MRPS25P82663 173 aaKnown RBP9.61□□□□□ -0.87
LIMCH1-209ENST00000509277 NOGQ13253 232 aa9.61□□□□□ -0.87
LIMCH1-209ENST00000509277 MOGSQ13724 837 aa9.61□□□□□ -0.87
LIMCH1-209ENST00000509277 RPAINQ86UA6 219 aa9.61□□□□□ -0.87
LIMCH1-209ENST00000509277 RIOX2Q8IUF8 465 aa9.61□□□□□ -0.87
LIMCH1-209ENST00000509277 LENG1Q96BZ8 264 aaPredicted RBP9.61□□□□□ -0.87
LIMCH1-209ENST00000509277 ADD3Q9UEY8 706 aaKnown RBP9.61□□□□□ -0.87
LIMCH1-209ENST00000509277 SRPRBQ9Y5M8 271 aaKnown RBP9.61□□□□□ -0.87
LIMCH1-209ENST00000509277 NOP56O00567 594 aaKnown RBP9.6□□□□□ -0.87
LIMCH1-209ENST00000509277 ZBTB39O15060 712 aa9.6□□□□□ -0.87
LIMCH1-209ENST00000509277 BMP15O95972 392 aa9.6□□□□□ -0.87
LIMCH1-209ENST00000509277 FDX1P10109 184 aa9.6□□□□□ -0.87
LIMCH1-209ENST00000509277 SREBF1P36956 1147 aa9.6□□□□□ -0.87
LIMCH1-209ENST00000509277 CCT5P48643 541 aa9.6□□□□□ -0.87
LIMCH1-209ENST00000509277 BIRC2Q13490 618 aa9.6□□□□□ -0.87
LIMCH1-209ENST00000509277 STXBP2Q15833 593 aa9.6□□□□□ -0.87
LIMCH1-209ENST00000509277 LY6KQ17RY6 165 aa9.6□□□□□ -0.87
LIMCH1-209ENST00000509277 MIER3Q7Z3K6 550 aa9.6□□□□□ -0.87
LIMCH1-209ENST00000509277 GPR142Q7Z601 462 aa9.6□□□□□ -0.87
LIMCH1-209ENST00000509277 PARD6BQ9BYG5 372 aa9.6□□□□□ -0.87
LIMCH1-209ENST00000509277 PDGFCQ9NRA1 345 aa9.6□□□□□ -0.87
LIMCH1-209ENST00000509277 DDX19AQ9NUU7 478 aaKnown RBP9.6□□□□□ -0.87
LIMCH1-209ENST00000509277 M0R2N6 131 aa9.6□□□□□ -0.87
LIMCH1-209ENST00000509277 ZEB2O60315 1214 aa9.6□□□□□ -0.87
LIMCH1-209ENST00000509277 PLCG1P19174 1290 aa9.6□□□□□ -0.87
LIMCH1-209ENST00000509277 DNA2P51530 1060 aa9.6□□□□□ -0.87
LIMCH1-209ENST00000509277 MRPS9P82933 396 aaKnown RBP9.6□□□□□ -0.87
LIMCH1-209ENST00000509277 TMEM63BQ5T3F8 832 aa9.6□□□□□ -0.87
LIMCH1-209ENST00000509277 ATL3Q6DD88 541 aa9.6□□□□□ -0.87
LIMCH1-209ENST00000509277 ANKRD23Q86SG2 305 aa9.6□□□□□ -0.87
LIMCH1-209ENST00000509277 CHST13Q8NET6 341 aa9.6□□□□□ -0.87
LIMCH1-209ENST00000509277 REPS2Q8NFH8 660 aa9.6□□□□□ -0.87
LIMCH1-209ENST00000509277 GOLGA5Q8TBA6 731 aa9.6□□□□□ -0.87
LIMCH1-209ENST00000509277 RIN2Q8WYP3 895 aaPredicted RBP9.6□□□□□ -0.87
LIMCH1-209ENST00000509277 FERMT2Q96AC1 680 aa9.6□□□□□ -0.87
LIMCH1-209ENST00000509277 ZNF668Q96K58 619 aaPredicted RBP9.6□□□□□ -0.87
LIMCH1-209ENST00000509277 PASKQ96RG2 1323 aa9.6□□□□□ -0.87
LIMCH1-209ENST00000509277 A0A087X0B3 334 aa9.59□□□□□ -0.87
LIMCH1-209ENST00000509277 E9PMD0 336 aa9.59□□□□□ -0.87
LIMCH1-209ENST00000509277 PLA2G6O60733 806 aa9.59□□□□□ -0.87
LIMCH1-209ENST00000509277 PPP6R2O75170 966 aa9.59□□□□□ -0.87
LIMCH1-209ENST00000509277 CNMDO75829 334 aa9.59□□□□□ -0.87
LIMCH1-209ENST00000509277 TKFCQ3LXA3 575 aa9.59□□□□□ -0.87
LIMCH1-209ENST00000509277 GNPTABQ3T906 1256 aa9.59□□□□□ -0.87
LIMCH1-209ENST00000509277 GBP6Q6ZN66 633 aa9.59□□□□□ -0.87
LIMCH1-209ENST00000509277 PLEKHH3Q7Z736 793 aa9.59□□□□□ -0.87
LIMCH1-209ENST00000509277 SMYD4Q8IYR2 804 aaPredicted RBP9.59□□□□□ -0.87
LIMCH1-209ENST00000509277 TELO2Q9Y4R8 837 aa9.59□□□□□ -0.87
LIMCH1-209ENST00000509277 CEP83Q9Y592 693 aa9.59□□□□□ -0.87
LIMCH1-209ENST00000509277 H3BQF6 201 aa9.59□□□□□ -0.87
LIMCH1-209ENST00000509277 SLC25A27O95847 323 aa9.59□□□□□ -0.87
LIMCH1-209ENST00000509277 RPSAP08865 295 aaKnown RBP9.59□□□□□ -0.87
LIMCH1-209ENST00000509277 CCDC172P0C7W6 258 aa9.59□□□□□ -0.87
LIMCH1-209ENST00000509277 CMA1P23946 247 aa9.59□□□□□ -0.87
LIMCH1-209ENST00000509277 GUCY2CP25092 1073 aa9.59□□□□□ -0.87
LIMCH1-209ENST00000509277 GCLCP48506 637 aaPredicted RBP9.59□□□□□ -0.87
LIMCH1-209ENST00000509277 CLK2P49760 499 aaKnown RBP9.59□□□□□ -0.87
LIMCH1-209ENST00000509277 ALDH5A1P51649 535 aaPredicted RBP9.59□□□□□ -0.87
LIMCH1-209ENST00000509277 IGBP1P78318 339 aa9.59□□□□□ -0.87
LIMCH1-209ENST00000509277 ASIC1P78348 528 aa9.59□□□□□ -0.87
LIMCH1-209ENST00000509277 CCL14Q16627 93 aa9.59□□□□□ -0.87
LIMCH1-209ENST00000509277 LONRF2Q1L5Z9 754 aa9.59□□□□□ -0.87
LIMCH1-209ENST00000509277 GLG1Q92896 1179 aa9.59□□□□□ -0.87
LIMCH1-209ENST00000509277 DYDC2Q96IM9 177 aa9.59□□□□□ -0.87
LIMCH1-209ENST00000509277 PPP1R16BQ96T49 567 aa9.59□□□□□ -0.87
LIMCH1-209ENST00000509277 MXRA8Q9BRK3 442 aa9.59□□□□□ -0.87
LIMCH1-209ENST00000509277 TEKT3Q9BXF9 490 aa9.59□□□□□ -0.87
LIMCH1-209ENST00000509277 ELP1O95163 1332 aa9.59□□□□□ -0.87
LIMCH1-209ENST00000509277 OTOFQ9HC10 1997 aa9.59□□□□□ -0.87
LIMCH1-209ENST00000509277 SOWAHBA6NEL2 793 aa9.59□□□□□ -0.87
LIMCH1-209ENST00000509277 SFI1A8K8P3 1242 aa9.59□□□□□ -0.87
LIMCH1-209ENST00000509277 SKAP2O75563 359 aaPredicted RBP9.59□□□□□ -0.87
LIMCH1-209ENST00000509277 ERLIN2O94905 339 aa9.59□□□□□ -0.87
LIMCH1-209ENST00000509277 SCP2P22307 547 aa9.59□□□□□ -0.87
LIMCH1-209ENST00000509277 MATR3P43243 847 aaKnown RBP eCLIP9.59□□□□□ -0.87
LIMCH1-209ENST00000509277 ADKP55263 362 aaKnown RBP9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms