RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 EMC7Q9NPA0 242 aa4.67□□□□□ -1.66
HMGB1-201ENST00000326004 FAN1Q9Y2M0 1017 aa4.67□□□□□ -1.66
HMGB1-201ENST00000326004 NEMP1O14524 444 aa4.66□□□□□ -1.66
HMGB1-201ENST00000326004 DVL2O14641 736 aa4.66□□□□□ -1.66
HMGB1-201ENST00000326004 FOXP2O15409 715 aa4.66□□□□□ -1.66
HMGB1-201ENST00000326004 GPR39O43194 453 aa4.66□□□□□ -1.66
HMGB1-201ENST00000326004 FARP2O94887 1054 aaPredicted RBP4.66□□□□□ -1.66
HMGB1-201ENST00000326004 CYP2C8P10632 490 aa4.66□□□□□ -1.66
HMGB1-201ENST00000326004 CDK11BP21127 795 aaKnown RBP4.66□□□□□ -1.66
HMGB1-201ENST00000326004 IGFBP6P24592 240 aaPredicted RBP4.66□□□□□ -1.66
HMGB1-201ENST00000326004 FAPQ12884 760 aa4.66□□□□□ -1.66
HMGB1-201ENST00000326004 TMEM132BQ14DG7 1078 aa4.66□□□□□ -1.66
HMGB1-201ENST00000326004 SEC23AQ15436 765 aa4.66□□□□□ -1.66
HMGB1-201ENST00000326004 CR1LQ2VPA4 569 aa4.66□□□□□ -1.66
HMGB1-201ENST00000326004 ATP13A4Q4VNC1 1196 aa4.66□□□□□ -1.66
HMGB1-201ENST00000326004 GPR158Q5T848 1215 aa4.66□□□□□ -1.66
HMGB1-201ENST00000326004 CD300LDQ6UXZ3 194 aa4.66□□□□□ -1.66
HMGB1-201ENST00000326004 NECAB2Q7Z6G3 386 aa4.66□□□□□ -1.66
HMGB1-201ENST00000326004 NME9Q86XW9 330 aa4.66□□□□□ -1.66
HMGB1-201ENST00000326004 KCNN1Q92952 543 aa4.66□□□□□ -1.66
HMGB1-201ENST00000326004 SPTLC3Q9NUV7 552 aa4.66□□□□□ -1.66
HMGB1-201ENST00000326004 TYW1Q9NV66 732 aaKnown RBP4.66□□□□□ -1.66
HMGB1-201ENST00000326004 PLA2G2DQ9UNK4 145 aa4.66□□□□□ -1.66
HMGB1-201ENST00000326004 ASB1Q9Y576 335 aa4.66□□□□□ -1.66
HMGB1-201ENST00000326004 PHLDB1Q86UU1 1377 aa4.65□□□□□ -1.66
HMGB1-201ENST00000326004 TGM5O43548 720 aa4.65□□□□□ -1.67
HMGB1-201ENST00000326004 C8BP07358 591 aa4.65□□□□□ -1.67
HMGB1-201ENST00000326004 ENO2P09104 434 aaPredicted RBP4.65□□□□□ -1.67
HMGB1-201ENST00000326004 SLC9A1P19634 815 aa4.65□□□□□ -1.67
HMGB1-201ENST00000326004 GLDCP23378 1020 aa4.65□□□□□ -1.67
HMGB1-201ENST00000326004 AOAHP28039 575 aa4.65□□□□□ -1.67
HMGB1-201ENST00000326004 LSP1P33241 339 aa4.65□□□□□ -1.67
HMGB1-201ENST00000326004 STAT5AP42229 794 aa4.65□□□□□ -1.67
HMGB1-201ENST00000326004 CDKN1CP49918 316 aaPredicted RBP4.65□□□□□ -1.67
HMGB1-201ENST00000326004 DLG4P78352 724 aa4.65□□□□□ -1.67
HMGB1-201ENST00000326004 PHC1P78364 1004 aa4.65□□□□□ -1.67
HMGB1-201ENST00000326004 ADCY1Q08828 1119 aa4.65□□□□□ -1.67
HMGB1-201ENST00000326004 DBPQ10586 325 aaPredicted RBP4.65□□□□□ -1.67
HMGB1-201ENST00000326004 LRRC32Q14392 662 aa4.65□□□□□ -1.67
HMGB1-201ENST00000326004 EPHA7Q15375 998 aa4.65□□□□□ -1.67
HMGB1-201ENST00000326004 CATSPEREQ5SY80 951 aa4.65□□□□□ -1.67
HMGB1-201ENST00000326004 CD276Q5ZPR3 534 aa4.65□□□□□ -1.67
HMGB1-201ENST00000326004 VASNQ6EMK4 673 aa4.65□□□□□ -1.67
HMGB1-201ENST00000326004 IGDCC3Q8IVU1 814 aa4.65□□□□□ -1.67
HMGB1-201ENST00000326004 PRPF38AQ8NAV1 312 aaKnown RBP4.65□□□□□ -1.67
HMGB1-201ENST00000326004 BHLHE22Q8NFJ8 381 aaPredicted RBP4.65□□□□□ -1.67
HMGB1-201ENST00000326004 E2F7Q96AV8 911 aa4.65□□□□□ -1.67
HMGB1-201ENST00000326004 PPP1R16BQ96T49 567 aa4.65□□□□□ -1.67
HMGB1-201ENST00000326004 ELF4Q99607 663 aaPredicted RBP4.65□□□□□ -1.67
HMGB1-201ENST00000326004 GCM1Q9NP62 436 aa4.65□□□□□ -1.67
HMGB1-201ENST00000326004 H2AFY2Q9P0M6 372 aaPredicted RBP4.65□□□□□ -1.67
HMGB1-201ENST00000326004 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP4.64□□□□□ -1.67
HMGB1-201ENST00000326004 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP4.64□□□□□ -1.67
HMGB1-201ENST00000326004 ZNF839A8K0R7 811 aa4.64□□□□□ -1.67
HMGB1-201ENST00000326004 PAX4O43316 350 aa4.64□□□□□ -1.67
HMGB1-201ENST00000326004 TMEM253P0C7T8 217 aa4.64□□□□□ -1.67
HMGB1-201ENST00000326004 MED14OSP0DP75 135 aa4.64□□□□□ -1.67
HMGB1-201ENST00000326004 ATF2P15336 505 aa4.64□□□□□ -1.67
HMGB1-201ENST00000326004 CD40P25942 277 aa4.64□□□□□ -1.67
HMGB1-201ENST00000326004 ID4P47928 161 aa4.64□□□□□ -1.67
HMGB1-201ENST00000326004 NCKAP1LP55160 1127 aa4.64□□□□□ -1.67
HMGB1-201ENST00000326004 SESN3P58005 492 aa4.64□□□□□ -1.67
HMGB1-201ENST00000326004 TMPRSS15P98073 1019 aa4.64□□□□□ -1.67
HMGB1-201ENST00000326004 MESP2Q0VG99 397 aa4.64□□□□□ -1.67
HMGB1-201ENST00000326004 DDB1Q16531 1140 aa4.64□□□□□ -1.67
HMGB1-201ENST00000326004 SYDE1Q6ZW31 735 aaPredicted RBP4.64□□□□□ -1.67
HMGB1-201ENST00000326004 PROSER1Q86XN7 944 aa4.64□□□□□ -1.67
HMGB1-201ENST00000326004 RPUSD2Q8IZ73 545 aaKnown RBP4.64□□□□□ -1.67
HMGB1-201ENST00000326004 FAM26EQ8N5C1 309 aa4.64□□□□□ -1.67
HMGB1-201ENST00000326004 ZNF610Q8N9Z0 462 aa4.64□□□□□ -1.67
HMGB1-201ENST00000326004 SMARCC2Q8TAQ2 1214 aa4.64□□□□□ -1.67
HMGB1-201ENST00000326004 ASB15Q8WXK1 588 aa4.64□□□□□ -1.67
HMGB1-201ENST00000326004 SLC5A5Q92911 643 aa4.64□□□□□ -1.67
HMGB1-201ENST00000326004 SIGLEC10Q96LC7 697 aa4.64□□□□□ -1.67
HMGB1-201ENST00000326004 C16orf92Q96LL3 132 aa4.64□□□□□ -1.67
HMGB1-201ENST00000326004 GBP4Q96PP9 640 aa4.64□□□□□ -1.67
HMGB1-201ENST00000326004 WRNIP1Q96S55 665 aa4.64□□□□□ -1.67
HMGB1-201ENST00000326004 TMEM209Q96SK2 561 aa4.64□□□□□ -1.67
HMGB1-201ENST00000326004 SLC38A3Q99624 504 aa4.64□□□□□ -1.67
HMGB1-201ENST00000326004 SGPP1Q9BX95 441 aa4.64□□□□□ -1.67
HMGB1-201ENST00000326004 KCNK12Q9HB15 430 aa4.64□□□□□ -1.67
HMGB1-201ENST00000326004 DLL4Q9NR61 685 aa4.64□□□□□ -1.67
HMGB1-201ENST00000326004 TOMM22Q9NS69 142 aa4.64□□□□□ -1.67
HMGB1-201ENST00000326004 HOMER2Q9NSB8 354 aa4.64□□□□□ -1.67
HMGB1-201ENST00000326004 SLC5A4Q9NY91 659 aa4.64□□□□□ -1.67
HMGB1-201ENST00000326004 ARHGAP28Q9P2N2 729 aa4.64□□□□□ -1.67
HMGB1-201ENST00000326004 RNF114Q9Y508 228 aa4.64□□□□□ -1.67
HMGB1-201ENST00000326004 GOLGA6L22H0YM25 854 aa4.63□□□□□ -1.67
HMGB1-201ENST00000326004 ETV2O00321 342 aaPredicted RBP4.63□□□□□ -1.67
HMGB1-201ENST00000326004 MMEP08473 750 aa4.63□□□□□ -1.67
HMGB1-201ENST00000326004 PTGS1P23219 599 aa4.63□□□□□ -1.67
HMGB1-201ENST00000326004 MC3RP41968 323 aa4.63□□□□□ -1.67
HMGB1-201ENST00000326004 EPHB3P54753 998 aa4.63□□□□□ -1.67
HMGB1-201ENST00000326004 SMAD3P84022 425 aaKnown RBP4.63□□□□□ -1.67
HMGB1-201ENST00000326004 FOXO4P98177 505 aa4.63□□□□□ -1.67
HMGB1-201ENST00000326004 TERF2Q15554 542 aa4.63□□□□□ -1.67
HMGB1-201ENST00000326004 SMAD2Q15796 467 aaKnown RBP4.63□□□□□ -1.67
HMGB1-201ENST00000326004 RGL3Q3MIN7 710 aa4.63□□□□□ -1.67
HMGB1-201ENST00000326004 IQSEC1Q6DN90 963 aa4.63□□□□□ -1.67
HMGB1-201ENST00000326004 RASSF3Q86WH2 238 aa4.63□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms