RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 FAM149B1Q96BN6 582 aa14.93□□□□□ -0.02
CCDC88A-201ENST00000263630 GPAA1O43292 621 aa14.93□□□□□ -0.02
CCDC88A-201ENST00000263630 PSMC2P35998 433 aaKnown RBP14.93□□□□□ -0.02
CCDC88A-201ENST00000263630 PARP10Q53GL7 1025 aa14.93□□□□□ -0.02
CCDC88A-201ENST00000263630 PIK3R2O00459 728 aa14.93□□□□□ -0.02
CCDC88A-201ENST00000263630 GAP43P17677 238 aa14.93□□□□□ -0.02
CCDC88A-201ENST00000263630 CDC23Q9UJX2 597 aa14.93□□□□□ -0.02
CCDC88A-201ENST00000263630 KRT38O76015 456 aa14.93□□□□□ -0.02
CCDC88A-201ENST00000263630 THAP11Q96EK4 314 aa14.93□□□□□ -0.02
CCDC88A-201ENST00000263630 PPARGC1AQ9UBK2 798 aaKnown RBP14.93□□□□□ -0.02
CCDC88A-201ENST00000263630 AFPP02771 609 aaKnown RBP14.92□□□□□ -0.02
CCDC88A-201ENST00000263630 LSG1Q9H089 658 aaKnown RBP14.92□□□□□ -0.02
CCDC88A-201ENST00000263630 H2AFY2Q9P0M6 372 aaPredicted RBP14.92□□□□□ -0.02
CCDC88A-201ENST00000263630 ZFP69BQ9UJL9 534 aa14.92□□□□□ -0.02
CCDC88A-201ENST00000263630 HADHAP40939 763 aa14.92□□□□□ -0.02
CCDC88A-201ENST00000263630 DCAF15Q66K64 600 aa14.92□□□□□ -0.02
CCDC88A-201ENST00000263630 TTC30BQ8N4P2 665 aa14.92□□□□□ -0.02
CCDC88A-201ENST00000263630 MRGBPQ9NV56 204 aa14.92□□□□□ -0.02
CCDC88A-201ENST00000263630 RHOBTB1O94844 696 aa14.92□□□□□ -0.02
CCDC88A-201ENST00000263630 RCSD1Q6JBY9 416 aa14.92□□□□□ -0.02
CCDC88A-201ENST00000263630 IFT43Q96FT9 208 aa14.92□□□□□ -0.02
CCDC88A-201ENST00000263630 GTSE1Q9NYZ3 720 aa14.92□□□□□ -0.02
CCDC88A-201ENST00000263630 SENP1Q9P0U3 644 aa14.92□□□□□ -0.02
CCDC88A-201ENST00000263630 TNNQ9UQP3 1299 aa14.92□□□□□ -0.02
CCDC88A-201ENST00000263630 PHLPP2Q6ZVD8 1323 aa14.92□□□□□ -0.02
CCDC88A-201ENST00000263630 HNRNPDLO14979 420 aaKnown RBP14.92□□□□□ -0.02
CCDC88A-201ENST00000263630 PDHA1P08559 390 aa14.92□□□□□ -0.02
CCDC88A-201ENST00000263630 PMS2P54278 862 aa14.92□□□□□ -0.02
CCDC88A-201ENST00000263630 ETF1P62495 437 aaKnown RBP14.92□□□□□ -0.02
CCDC88A-201ENST00000263630 AKT3Q9Y243 479 aa14.92□□□□□ -0.02
CCDC88A-201ENST00000263630 DIS3Q9Y2L1 958 aaKnown RBP14.92□□□□□ -0.02
CCDC88A-201ENST00000263630 SYNDIG1LA6NDD5 238 aa14.92□□□□□ -0.02
CCDC88A-201ENST00000263630 RALBP11234 206 aa14.92□□□□□ -0.02
CCDC88A-201ENST00000263630 ZNF18P17022 549 aa14.92□□□□□ -0.02
CCDC88A-201ENST00000263630 DMTNQ08495 405 aa14.92□□□□□ -0.02
CCDC88A-201ENST00000263630 NAA35Q5VZE5 725 aa14.92□□□□□ -0.02
CCDC88A-201ENST00000263630 MAGED2Q9UNF1 606 aaPredicted RBP14.92□□□□□ -0.02
CCDC88A-201ENST00000263630 FAM32AQ9Y421 112 aaKnown RBP14.92□□□□□ -0.02
CCDC88A-201ENST00000263630 TARSL2A2RTX5 802 aaKnown RBP14.92□□□□□ -0.02
CCDC88A-201ENST00000263630 WDR91A4D1P6 747 aa14.92□□□□□ -0.02
CCDC88A-201ENST00000263630 HSPA2P54652 639 aa14.92□□□□□ -0.02
CCDC88A-201ENST00000263630 UBE3AQ05086 875 aa14.92□□□□□ -0.02
CCDC88A-201ENST00000263630 TRIP4Q15650 581 aaPredicted RBP14.92□□□□□ -0.02
CCDC88A-201ENST00000263630 KRT77Q7Z794 578 aa14.92□□□□□ -0.02
CCDC88A-201ENST00000263630 SMARCAD1Q9H4L7 1026 aa14.92□□□□□ -0.02
CCDC88A-201ENST00000263630 FARP1Q9Y4F1 1045 aaPredicted RBP14.92□□□□□ -0.02
CCDC88A-201ENST00000263630 MOCS3O95396 460 aa14.92□□□□□ -0.02
CCDC88A-201ENST00000263630 TECP42680 631 aa14.92□□□□□ -0.02
CCDC88A-201ENST00000263630 SNAP25P60880 206 aa14.92□□□□□ -0.02
CCDC88A-201ENST00000263630 CAV1Q03135 178 aa14.92□□□□□ -0.02
CCDC88A-201ENST00000263630 LBRQ14739 615 aaKnown RBP14.92□□□□□ -0.02
CCDC88A-201ENST00000263630 TSSK1BQ9BXA7 367 aa14.92□□□□□ -0.02
CCDC88A-201ENST00000263630 SUGCTQ9HAC7 445 aa14.92□□□□□ -0.02
CCDC88A-201ENST00000263630 CDC25BP30305 580 aa14.92□□□□□ -0.02
CCDC88A-201ENST00000263630 BFSP2Q13515 415 aa14.92□□□□□ -0.02
CCDC88A-201ENST00000263630 EXT2Q93063 718 aa14.92□□□□□ -0.02
CCDC88A-201ENST00000263630 CCDC127Q96BQ5 260 aa14.92□□□□□ -0.02
CCDC88A-201ENST00000263630 BIRC5O15392 142 aa14.91□□□□□ -0.02
CCDC88A-201ENST00000263630 ELF1P32519 619 aa14.91□□□□□ -0.02
CCDC88A-201ENST00000263630 TRMT44Q8IYL2 757 aaKnown RBP14.91□□□□□ -0.02
CCDC88A-201ENST00000263630 ARMT1Q9H993 441 aa14.91□□□□□ -0.02
CCDC88A-201ENST00000263630 NCOA1Q15788 1441 aa14.91□□□□□ -0.02
CCDC88A-201ENST00000263630 PBXIP1Q96AQ6 731 aa14.91□□□□□ -0.02
CCDC88A-201ENST00000263630 SCAF11Q99590 1463 aaKnown RBP14.91□□□□□ -0.02
CCDC88A-201ENST00000263630 LRRIQ3A6PVS8 624 aaPredicted RBP14.91□□□□□ -0.02
CCDC88A-201ENST00000263630 TMEM161AQ9NX61 479 aa14.91□□□□□ -0.02
CCDC88A-201ENST00000263630 SYBUQ9NX95 663 aa14.91□□□□□ -0.02
CCDC88A-201ENST00000263630 DCTPP1Q9H773 170 aa14.91□□□□□ -0.02
CCDC88A-201ENST00000263630 NNMTP40261 264 aa14.91□□□□□ -0.02
CCDC88A-201ENST00000263630 OTUD7BQ6GQQ9 843 aa14.91□□□□□ -0.02
CCDC88A-201ENST00000263630 DESI2Q9BSY9 194 aa14.91□□□□□ -0.02
CCDC88A-201ENST00000263630 OR52Z1P0C646 297 aa14.91□□□□□ -0.02
CCDC88A-201ENST00000263630 ABCE1P61221 599 aaKnown RBP14.91□□□□□ -0.02
CCDC88A-201ENST00000263630 DHX9Q08211 1270 aaKnown RBP14.91□□□□□ -0.02
CCDC88A-201ENST00000263630 INPP5AQ14642 412 aa14.91□□□□□ -0.02
CCDC88A-201ENST00000263630 HIPK4Q8NE63 616 aa14.91□□□□□ -0.02
CCDC88A-201ENST00000263630 CEP95Q96GE4 821 aa14.91□□□□□ -0.02
CCDC88A-201ENST00000263630 GTPBP6O43824 516 aaPredicted RBP14.91□□□□□ -0.02
CCDC88A-201ENST00000263630 EPM2AIP1Q7L775 607 aaPredicted RBP14.91□□□□□ -0.02
CCDC88A-201ENST00000263630 ACSBG1Q96GR2 724 aa14.91□□□□□ -0.02
CCDC88A-201ENST00000263630 H0YIN7 160 aa14.9□□□□□ -0.02
CCDC88A-201ENST00000263630 ZNF713Q8N859 430 aaPredicted RBP14.9□□□□□ -0.02
CCDC88A-201ENST00000263630 AGBL1Q96MI9 1066 aa14.9□□□□□ -0.02
CCDC88A-201ENST00000263630 USE1Q9NZ43 259 aa14.9□□□□□ -0.02
CCDC88A-201ENST00000263630 PLCH2O75038 1416 aa14.9□□□□□ -0.02
CCDC88A-201ENST00000263630 DR1Q01658 176 aa14.9□□□□□ -0.02
CCDC88A-201ENST00000263630 SPATA1Q5VX52 437 aa14.9□□□□□ -0.02
CCDC88A-201ENST00000263630 TBC1D9BQ66K14 1250 aa14.9□□□□□ -0.02
CCDC88A-201ENST00000263630 SIKE1Q9BRV8 207 aa14.9□□□□□ -0.02
CCDC88A-201ENST00000263630 NNTQ13423 1086 aa14.9□□□□□ -0.02
CCDC88A-201ENST00000263630 TUBGCP2Q9BSJ2 902 aa14.9□□□□□ -0.02
CCDC88A-201ENST00000263630 MBD2Q9UBB5 411 aa14.9□□□□□ -0.02
CCDC88A-201ENST00000263630 JAG2Q9Y219 1238 aa14.9□□□□□ -0.02
CCDC88A-201ENST00000263630 MROH5Q6ZUA9 1318 aa14.9□□□□□ -0.02
CCDC88A-201ENST00000263630 CASP14P31944 242 aa14.9□□□□□ -0.02
CCDC88A-201ENST00000263630 ASZ1Q8WWH4 475 aa14.9□□□□□ -0.02
CCDC88A-201ENST00000263630 RPRD1BQ9NQG5 326 aaKnown RBP14.9□□□□□ -0.02
CCDC88A-201ENST00000263630 SEPT9Q9UHD8 586 aaPredicted RBP14.9□□□□□ -0.02
CCDC88A-201ENST00000263630 BTNL9Q6UXG8 535 aa14.9□□□□□ -0.02
CCDC88A-201ENST00000263630 NIM1KQ8IY84 436 aa14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms