RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 KRT31Q15323 416 aa25.18■■□□□ 1.62
CDX1-201ENST00000231656 LRCH2Q5VUJ6 765 aa25.18■■□□□ 1.62
CDX1-201ENST00000231656 TTI2Q6NXR4 508 aa25.18■■□□□ 1.62
CDX1-201ENST00000231656 INPP4AQ96PE3 977 aaPredicted RBP25.18■■□□□ 1.62
CDX1-201ENST00000231656 LRRC27Q9C0I9 530 aa25.18■■□□□ 1.62
CDX1-201ENST00000231656 NT5C3AQ9H0P0 336 aa25.18■■□□□ 1.62
CDX1-201ENST00000231656 PLXNA1Q9UIW2 1896 aa25.17■■□□□ 1.62
CDX1-201ENST00000231656 STRNO43815 780 aa25.17■■□□□ 1.62
CDX1-201ENST00000231656 PPP1R2P41236 205 aa25.17■■□□□ 1.62
CDX1-201ENST00000231656 TCP11X2Q5H9J9 407 aa25.17■■□□□ 1.62
CDX1-201ENST00000231656 C17orf99Q6UX52 265 aa25.17■■□□□ 1.62
CDX1-201ENST00000231656 IRF2BP1Q8IU81 584 aa25.17■■□□□ 1.62
CDX1-201ENST00000231656 FGD4Q96M96 766 aa25.17■■□□□ 1.62
CDX1-201ENST00000231656 AOC2O75106 756 aa25.16■■□□□ 1.62
CDX1-201ENST00000231656 RGS20O76081 388 aa25.16■■□□□ 1.62
CDX1-201ENST00000231656 EDNRBP24530 442 aa25.16■■□□□ 1.62
CDX1-201ENST00000231656 MAPK4P31152 587 aa25.16■■□□□ 1.62
CDX1-201ENST00000231656 CRHR2Q13324 411 aa25.16■■□□□ 1.62
CDX1-201ENST00000231656 STXBP2Q15833 593 aa25.16■■□□□ 1.62
CDX1-201ENST00000231656 FILIP1LQ4L180 1135 aa25.16■■□□□ 1.62
CDX1-201ENST00000231656 GPR142Q7Z601 462 aa25.16■■□□□ 1.62
CDX1-201ENST00000231656 ABRAQ8N0Z2 381 aa25.16■■□□□ 1.62
CDX1-201ENST00000231656 KIAA0895Q8NCT3 520 aa25.16■■□□□ 1.62
CDX1-201ENST00000231656 CCDC112Q8NEF3 446 aa25.16■■□□□ 1.62
CDX1-201ENST00000231656 GPRASP2Q96D09 838 aa25.16■■□□□ 1.62
CDX1-201ENST00000231656 AGO4Q9HCK5 861 aaKnown RBP25.16■■□□□ 1.62
CDX1-201ENST00000231656 IVNS1ABPQ9Y6Y0 642 aa25.16■■□□□ 1.62
CDX1-201ENST00000231656 USP27XA6NNY8 438 aa25.16■■□□□ 1.62
CDX1-201ENST00000231656 KCNJ18B7U540 433 aa25.16■■□□□ 1.62
CDX1-201ENST00000231656 GAS7O60861 476 aa25.16■■□□□ 1.62
CDX1-201ENST00000231656 KCNJ12Q14500 433 aa25.16■■□□□ 1.62
CDX1-201ENST00000231656 OTOP1Q7RTM1 612 aa25.16■■□□□ 1.62
CDX1-201ENST00000231656 RIT2Q99578 217 aa25.16■■□□□ 1.62
CDX1-201ENST00000231656 LRRC37A2A6NM11 1700 aa25.15■■□□□ 1.62
CDX1-201ENST00000231656 NRDCO43847 1150 aa25.15■■□□□ 1.62
CDX1-201ENST00000231656 CCNE1P24864 410 aa25.15■■□□□ 1.62
CDX1-201ENST00000231656 ADORA2AP29274 412 aa25.15■■□□□ 1.62
CDX1-201ENST00000231656 COPB1P53618 953 aaKnown RBP25.15■■□□□ 1.62
CDX1-201ENST00000231656 GOLGA8FQ08AF8 430 aa25.15■■□□□ 1.62
CDX1-201ENST00000231656 GOLGA8DPQ0D2H9 430 aa25.15■■□□□ 1.62
CDX1-201ENST00000231656 NLRX1Q86UT6 975 aa25.15■■□□□ 1.62
CDX1-201ENST00000231656 CCAR2Q8N163 923 aaKnown RBP25.15■■□□□ 1.62
CDX1-201ENST00000231656 P2RX5Q93086 422 aa25.15■■□□□ 1.62
CDX1-201ENST00000231656 DUSP9Q99956 384 aaKnown RBP25.15■■□□□ 1.62
CDX1-201ENST00000231656 THAP9Q9H5L6 903 aa25.15■■□□□ 1.62
CDX1-201ENST00000231656 PKD2L1Q9P0L9 805 aa25.15■■□□□ 1.62
CDX1-201ENST00000231656 MCM3APO60318 1980 aa25.15■■□□□ 1.62
CDX1-201ENST00000231656 DOCK3Q8IZD9 2030 aa25.15■■□□□ 1.62
CDX1-201ENST00000231656 POTEB3A0JP26 581 aa25.14■■□□□ 1.62
CDX1-201ENST00000231656 MAFGO15525 162 aa25.14■■□□□ 1.62
CDX1-201ENST00000231656 DHX15O43143 795 aaKnown RBP25.14■■□□□ 1.62
CDX1-201ENST00000231656 CA12O43570 354 aa25.14■■□□□ 1.62
CDX1-201ENST00000231656 EIF3JO75822 258 aaKnown RBP25.14■■□□□ 1.62
CDX1-201ENST00000231656 EHHADHQ08426 723 aa25.14■■□□□ 1.62
CDX1-201ENST00000231656 PPP2R5CQ13362 524 aa25.14■■□□□ 1.62
CDX1-201ENST00000231656 NCAPH2Q6IBW4 605 aa25.14■■□□□ 1.62
CDX1-201ENST00000231656 POTEBQ6S5H4 581 aa25.14■■□□□ 1.62
CDX1-201ENST00000231656 DYMQ7RTS9 669 aa25.14■■□□□ 1.62
CDX1-201ENST00000231656 DDX12PQ92771 950 aa25.14■■□□□ 1.62
CDX1-201ENST00000231656 HPS3Q969F9 1004 aa25.14■■□□□ 1.62
CDX1-201ENST00000231656 KIAA1024Q9UPX6 916 aa25.14■■□□□ 1.62
CDX1-201ENST00000231656 MED24O75448 989 aa25.13■■□□□ 1.61
CDX1-201ENST00000231656 ITGB3BPQ13352 177 aaPredicted RBP25.13■■□□□ 1.61
CDX1-201ENST00000231656 GNPTABQ3T906 1256 aa25.13■■□□□ 1.61
CDX1-201ENST00000231656 PLEKHH3Q7Z736 793 aa25.13■■□□□ 1.61
CDX1-201ENST00000231656 TMEM139Q8IV31 216 aa25.13■■□□□ 1.61
CDX1-201ENST00000231656 TC2NQ8N9U0 490 aa25.13■■□□□ 1.61
CDX1-201ENST00000231656 NOC3LQ8WTT2 800 aaKnown RBP25.13■■□□□ 1.61
CDX1-201ENST00000231656 DNAJC19Q96DA6 116 aa25.13■■□□□ 1.61
CDX1-201ENST00000231656 TRIM47Q96LD4 638 aa25.13■■□□□ 1.61
CDX1-201ENST00000231656 TEKT3Q9BXF9 490 aa25.13■■□□□ 1.61
CDX1-201ENST00000231656 B4DLN1 442 aa25.13■■□□□ 1.61
CDX1-201ENST00000231656 GRB14Q14449 540 aa25.13■■□□□ 1.61
CDX1-201ENST00000231656 E4F1Q66K89 784 aaPredicted RBP25.13■■□□□ 1.61
CDX1-201ENST00000231656 ANKRD20A12PQ8NF67 263 aa25.13■■□□□ 1.61
CDX1-201ENST00000231656 MPHOSPH6Q99547 160 aaKnown RBP25.13■■□□□ 1.61
CDX1-201ENST00000231656 TAB2Q9NYJ8 693 aa25.13■■□□□ 1.61
CDX1-201ENST00000231656 BICDL2A1A5D9 508 aa25.12■■□□□ 1.61
CDX1-201ENST00000231656 E9PMD0 336 aa25.12■■□□□ 1.61
CDX1-201ENST00000231656 EML1O00423 815 aa25.12■■□□□ 1.61
CDX1-201ENST00000231656 ATP9AO75110 1047 aa25.12■■□□□ 1.61
CDX1-201ENST00000231656 ALDH1A1P00352 501 aa25.12■■□□□ 1.61
CDX1-201ENST00000231656 ZNF792Q3KQV3 632 aa25.12■■□□□ 1.61
CDX1-201ENST00000231656 HAUS3Q68CZ6 603 aa25.12■■□□□ 1.61
CDX1-201ENST00000231656 B3GNT9Q6UX72 402 aa25.12■■□□□ 1.61
CDX1-201ENST00000231656 CDHR1Q96JP9 859 aa25.12■■□□□ 1.61
CDX1-201ENST00000231656 C16orf45Q96MC5 204 aaPredicted RBP25.12■■□□□ 1.61
CDX1-201ENST00000231656 SLC39A2Q9NP94 309 aa25.12■■□□□ 1.61
CDX1-201ENST00000231656 TBC1D22BQ9NU19 505 aa25.12■■□□□ 1.61
CDX1-201ENST00000231656 ITIH6Q6UXX5 1313 aa25.12■■□□□ 1.61
CDX1-201ENST00000231656 PLA2G4BP0C869 781 aa25.11■■□□□ 1.61
CDX1-201ENST00000231656 EEF1GP26641 437 aaKnown RBP25.11■■□□□ 1.61
CDX1-201ENST00000231656 ANKRD40Q6AI12 368 aa25.11■■□□□ 1.61
CDX1-201ENST00000231656 REM2Q8IYK8 340 aaPredicted RBP25.11■■□□□ 1.61
CDX1-201ENST00000231656 ERMNQ8TAM6 284 aa25.11■■□□□ 1.61
CDX1-201ENST00000231656 SRRTQ9BXP5 876 aaKnown RBP25.11■■□□□ 1.61
CDX1-201ENST00000231656 UNC45AQ9H3U1 944 aa25.11■■□□□ 1.61
CDX1-201ENST00000231656 STK24Q9Y6E0 443 aa25.11■■□□□ 1.61
CDX1-201ENST00000231656 LOC102724159A0A0B4J2E5 919 aa25.1■■□□□ 1.61
CDX1-201ENST00000231656 SPATA31C2B4DYI2 1134 aa25.1■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms