RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 NFXL1Q6ZNB6 911 aa21.78■■□□□ 1.08
CDX1-202ENST00000616154 TRIM50Q86XT4 487 aa21.78■■□□□ 1.08
CDX1-202ENST00000616154 RASEFQ8IZ41 740 aa21.78■■□□□ 1.08
CDX1-202ENST00000616154 GIMAP8Q8ND71 665 aaPredicted RBP21.78■■□□□ 1.08
CDX1-202ENST00000616154 SP7Q8TDD2 431 aaPredicted RBP21.78■■□□□ 1.08
CDX1-202ENST00000616154 SEPT8Q92599 483 aa21.78■■□□□ 1.08
CDX1-202ENST00000616154 NEK1Q96PY6 1258 aa21.78■■□□□ 1.08
CDX1-202ENST00000616154 SETD4Q9NVD3 440 aa21.78■■□□□ 1.08
CDX1-202ENST00000616154 TELO2Q9Y4R8 837 aa21.78■■□□□ 1.08
CDX1-202ENST00000616154 COL4A6Q14031 1691 aa21.77■■□□□ 1.08
CDX1-202ENST00000616154 CTSHP09668 335 aa21.77■■□□□ 1.07
CDX1-202ENST00000616154 CALM1P0DP23 149 aa21.77■■□□□ 1.07
CDX1-202ENST00000616154 CALM2P0DP24 149 aa21.77■■□□□ 1.07
CDX1-202ENST00000616154 CALM3P0DP25 149 aa21.77■■□□□ 1.07
CDX1-202ENST00000616154 ADAM17P78536 824 aa21.77■■□□□ 1.07
CDX1-202ENST00000616154 UTP14CQ5TAP6 766 aaKnown RBP21.77■■□□□ 1.07
CDX1-202ENST00000616154 MYOCDQ8IZQ8 938 aa21.77■■□□□ 1.07
CDX1-202ENST00000616154 GPRASP2Q96D09 838 aa21.77■■□□□ 1.07
CDX1-202ENST00000616154 NLRC5Q86WI3 1866 aa21.76■■□□□ 1.07
CDX1-202ENST00000616154 EPB41L2O43491 1005 aaKnown RBP21.76■■□□□ 1.07
CDX1-202ENST00000616154 KRT32Q14532 448 aa21.76■■□□□ 1.07
CDX1-202ENST00000616154 CMTR1Q8N1G2 835 aaKnown RBP21.76■■□□□ 1.07
CDX1-202ENST00000616154 LMBR1Q8WVP7 490 aa21.76■■□□□ 1.07
CDX1-202ENST00000616154 CDHR1Q96JP9 859 aa21.76■■□□□ 1.07
CDX1-202ENST00000616154 PSTPIP2Q9H939 334 aa21.76■■□□□ 1.07
CDX1-202ENST00000616154 RXRAP19793 462 aa21.75■■□□□ 1.07
CDX1-202ENST00000616154 COL9A1P20849 921 aa21.75■■□□□ 1.07
CDX1-202ENST00000616154 ARHGAP4P98171 946 aa21.75■■□□□ 1.07
CDX1-202ENST00000616154 SP4Q02446 784 aa21.75■■□□□ 1.07
CDX1-202ENST00000616154 FAM26DQ5JW98 314 aa21.75■■□□□ 1.07
CDX1-202ENST00000616154 DHX32Q7L7V1 743 aaKnown RBP21.75■■□□□ 1.07
CDX1-202ENST00000616154 OSBPL7Q9BZF2 842 aa21.75■■□□□ 1.07
CDX1-202ENST00000616154 RALGAPA2Q2PPJ7 1873 aa21.74■■□□□ 1.07
CDX1-202ENST00000616154 NRCAMQ92823 1304 aa21.74■■□□□ 1.07
CDX1-202ENST00000616154 KCNA2P16389 499 aa21.74■■□□□ 1.07
CDX1-202ENST00000616154 HSPA4P34932 840 aa21.74■■□□□ 1.07
CDX1-202ENST00000616154 ADCK5Q3MIX3 580 aa21.74■■□□□ 1.07
CDX1-202ENST00000616154 FBXO22Q8NEZ5 403 aa21.74■■□□□ 1.07
CDX1-202ENST00000616154 APBB2Q92870 758 aa21.74■■□□□ 1.07
CDX1-202ENST00000616154 TOP1MTQ969P6 601 aa21.74■■□□□ 1.07
CDX1-202ENST00000616154 C17orf80Q9BSJ5 609 aa21.74■■□□□ 1.07
CDX1-202ENST00000616154 SLC12A7Q9Y666 1083 aa21.74■■□□□ 1.07
CDX1-202ENST00000616154 LOC101059915A0A1B0GWI6 518 aaPredicted RBP21.73■■□□□ 1.07
CDX1-202ENST00000616154 ATP9AO75110 1047 aa21.73■■□□□ 1.07
CDX1-202ENST00000616154 HMGB1P09429 215 aaKnown RBP21.73■■□□□ 1.07
CDX1-202ENST00000616154 ITGB5P18084 799 aa21.73■■□□□ 1.07
CDX1-202ENST00000616154 TCF7P36402 384 aaPredicted RBP21.73■■□□□ 1.07
CDX1-202ENST00000616154 TMTC3Q6ZXV5 915 aa21.73■■□□□ 1.07
CDX1-202ENST00000616154 RPAINQ86UA6 219 aa21.73■■□□□ 1.07
CDX1-202ENST00000616154 SAMD11Q96NU1 681 aa21.73■■□□□ 1.07
CDX1-202ENST00000616154 UBIAD1Q9Y5Z9 338 aa21.73■■□□□ 1.07
CDX1-202ENST00000616154 RCAN1P53805 252 aa21.72■■□□□ 1.07
CDX1-202ENST00000616154 TAF2Q6P1X5 1199 aa21.72■■□□□ 1.07
CDX1-202ENST00000616154 APOA5Q6Q788 366 aa21.72■■□□□ 1.07
CDX1-202ENST00000616154 FANCBQ8NB91 859 aa21.72■■□□□ 1.07
CDX1-202ENST00000616154 LRRC2Q9BYS8 371 aa21.72■■□□□ 1.07
CDX1-202ENST00000616154 GSTTP1A0A1W2PQM5 241 aa21.71■■□□□ 1.07
CDX1-202ENST00000616154 hCG_1642624A0A1W2PR95 340 aa21.71■■□□□ 1.07
CDX1-202ENST00000616154 SPDYE3A6NKU9 549 aa21.71■■□□□ 1.07
CDX1-202ENST00000616154 REC8O95072 547 aa21.71■■□□□ 1.07
CDX1-202ENST00000616154 MTMR1Q13613 665 aa21.71■■□□□ 1.07
CDX1-202ENST00000616154 UBE2SQ16763 222 aa21.71■■□□□ 1.07
CDX1-202ENST00000616154 RAB11FIP4Q86YS3 637 aa21.71■■□□□ 1.07
CDX1-202ENST00000616154 FBXL16Q8N461 479 aa21.71■■□□□ 1.07
CDX1-202ENST00000616154 SEPT1Q8WYJ6 367 aa21.71■■□□□ 1.07
CDX1-202ENST00000616154 YME1L1Q96TA2 773 aa21.71■■□□□ 1.07
CDX1-202ENST00000616154 IFIH1Q9BYX4 1025 aaKnown RBP21.71■■□□□ 1.07
CDX1-202ENST00000616154 ERAP1Q9NZ08 941 aa21.71■■□□□ 1.07
CDX1-202ENST00000616154 MAFGO15525 162 aa21.7■■□□□ 1.06
CDX1-202ENST00000616154 CHRNA1P02708 482 aa21.7■■□□□ 1.06
CDX1-202ENST00000616154 PPFIA1Q13136 1202 aa21.7■■□□□ 1.06
CDX1-202ENST00000616154 EPC2Q52LR7 807 aa21.7■■□□□ 1.06
CDX1-202ENST00000616154 MICU3Q86XE3 530 aa21.7■■□□□ 1.06
CDX1-202ENST00000616154 UBE2ZQ9H832 354 aaPredicted RBP21.7■■□□□ 1.06
CDX1-202ENST00000616154 JADE2Q9NQC1 790 aa21.7■■□□□ 1.06
CDX1-202ENST00000616154 PCDHA6Q9UN73 950 aa21.7■■□□□ 1.06
CDX1-202ENST00000616154 PCDHA8Q9Y5H6 950 aa21.7■■□□□ 1.06
CDX1-202ENST00000616154 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP21.69■■□□□ 1.06
CDX1-202ENST00000616154 UPP2O95045 317 aa21.69■■□□□ 1.06
CDX1-202ENST00000616154 RUFY4Q6ZNE9 571 aa21.69■■□□□ 1.06
CDX1-202ENST00000616154 HEATR3Q7Z4Q2 680 aa21.69■■□□□ 1.06
CDX1-202ENST00000616154 CCDC82Q8N4S0 544 aa21.69■■□□□ 1.06
CDX1-202ENST00000616154 MRPL38Q96DV4 380 aaKnown RBP21.69■■□□□ 1.06
CDX1-202ENST00000616154 C1QTNF1Q9BXJ1 281 aa21.69■■□□□ 1.06
CDX1-202ENST00000616154 SNX14Q9Y5W7 946 aa21.69■■□□□ 1.06
CDX1-202ENST00000616154 MBLAC1A4D2B0 266 aaPredicted RBP21.68■■□□□ 1.06
CDX1-202ENST00000616154 MGAT3Q09327 533 aa21.68■■□□□ 1.06
CDX1-202ENST00000616154 GRIK4Q16099 956 aa21.68■■□□□ 1.06
CDX1-202ENST00000616154 PTPROQ16827 1216 aa21.68■■□□□ 1.06
CDX1-202ENST00000616154 TEX2Q8IWB9 1127 aa21.68■■□□□ 1.06
CDX1-202ENST00000616154 GLG1Q92896 1179 aa21.68■■□□□ 1.06
CDX1-202ENST00000616154 SMARCAD1Q9H4L7 1026 aa21.68■■□□□ 1.06
CDX1-202ENST00000616154 EHMT1Q9H9B1 1298 aa21.68■■□□□ 1.06
CDX1-202ENST00000616154 RBM28Q9NW13 759 aaKnown RBP21.68■■□□□ 1.06
CDX1-202ENST00000616154 PKD2L1Q9P0L9 805 aa21.68■■□□□ 1.06
CDX1-202ENST00000616154 TUBE1Q9UJT0 475 aa21.68■■□□□ 1.06
CDX1-202ENST00000616154 BRPF3Q9ULD4 1205 aa21.68■■□□□ 1.06
CDX1-202ENST00000616154 CNTNAP5Q8WYK1 1306 aa21.68■■□□□ 1.06
CDX1-202ENST00000616154 TTC3P53804 2025 aa21.67■■□□□ 1.06
CDX1-202ENST00000616154 H3BNC9 293 aa21.67■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms