RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 C1QTNF9P0C862 333 aa7.41□□□□□ -1.22
VPS29-210ENST00000552130 ZSCAN22P10073 491 aaPredicted RBP7.41□□□□□ -1.22
VPS29-210ENST00000552130 CAPN3P20807 821 aa7.41□□□□□ -1.22
VPS29-210ENST00000552130 GUCY2CP25092 1073 aa7.41□□□□□ -1.22
VPS29-210ENST00000552130 ADD2P35612 726 aa7.41□□□□□ -1.22
VPS29-210ENST00000552130 IARSP41252 1262 aaKnown RBP7.41□□□□□ -1.22
VPS29-210ENST00000552130 GRK6P43250 576 aa7.41□□□□□ -1.22
VPS29-210ENST00000552130 APBA1Q02410 837 aa7.41□□□□□ -1.22
VPS29-210ENST00000552130 NEXNQ0ZGT2 675 aa7.41□□□□□ -1.22
VPS29-210ENST00000552130 PRKG2Q13237 762 aa7.41□□□□□ -1.22
VPS29-210ENST00000552130 MAP1SQ66K74 1059 aaPredicted RBP7.41□□□□□ -1.22
VPS29-210ENST00000552130 SLC41A1Q8IVJ1 513 aa7.41□□□□□ -1.22
VPS29-210ENST00000552130 TM9SF2Q99805 663 aa7.41□□□□□ -1.22
VPS29-210ENST00000552130 CRB3Q9BUF7 120 aa7.41□□□□□ -1.22
VPS29-210ENST00000552130 EMILIN2Q9BXX0 1053 aa7.41□□□□□ -1.22
VPS29-210ENST00000552130 CRTAC1Q9NQ79 661 aa7.41□□□□□ -1.22
VPS29-210ENST00000552130 ARHGEF4Q9NR80 690 aa7.41□□□□□ -1.22
VPS29-210ENST00000552130 BLOC1S4Q9NUP1 217 aa7.41□□□□□ -1.22
VPS29-210ENST00000552130 RRN3Q9NYV6 651 aa7.41□□□□□ -1.22
VPS29-210ENST00000552130 TNPO3Q9Y5L0 923 aaKnown RBP7.41□□□□□ -1.22
VPS29-210ENST00000552130 ITIH6Q6UXX5 1313 aa7.41□□□□□ -1.22
VPS29-210ENST00000552130 TRAV20A0A0B4J274 112 aa7.4□□□□□ -1.22
VPS29-210ENST00000552130 AGRPO00253 132 aa7.4□□□□□ -1.22
VPS29-210ENST00000552130 PRRG2O14669 202 aa7.4□□□□□ -1.22
VPS29-210ENST00000552130 ENC1O14682 589 aa7.4□□□□□ -1.22
VPS29-210ENST00000552130 CNOT4O95628 575 aaKnown RBP7.4□□□□□ -1.22
VPS29-210ENST00000552130 MT-CO1P00395 513 aa7.4□□□□□ -1.22
VPS29-210ENST00000552130 HNRNPCP07910 306 aaKnown RBP eCLIP7.4□□□□□ -1.22
VPS29-210ENST00000552130 IFIT1P09914 478 aaKnown RBP7.4□□□□□ -1.22
VPS29-210ENST00000552130 RHCEP18577 417 aa7.4□□□□□ -1.22
VPS29-210ENST00000552130 OAS2P29728 719 aaKnown RBP7.4□□□□□ -1.22
VPS29-210ENST00000552130 CHKAP35790 457 aa7.4□□□□□ -1.22
VPS29-210ENST00000552130 STT3AP46977 705 aa7.4□□□□□ -1.22
VPS29-210ENST00000552130 RHDQ02161 417 aa7.4□□□□□ -1.22
VPS29-210ENST00000552130 KIF22Q14807 665 aa7.4□□□□□ -1.22
VPS29-210ENST00000552130 PPM1JQ5JR12 505 aa7.4□□□□□ -1.22
VPS29-210ENST00000552130 DIEXFQ68CQ4 756 aaKnown RBP7.4□□□□□ -1.22
VPS29-210ENST00000552130 MPRIPQ6WCQ1 1025 aa7.4□□□□□ -1.22
VPS29-210ENST00000552130 C22orf34Q6ZV56 151 aa7.4□□□□□ -1.22
VPS29-210ENST00000552130 CYFIP1Q7L576 1253 aa7.4□□□□□ -1.22
VPS29-210ENST00000552130 CHST15Q7LFX5 561 aaPredicted RBP7.4□□□□□ -1.22
VPS29-210ENST00000552130 CATIPQ7Z7H3 387 aa7.4□□□□□ -1.22
VPS29-210ENST00000552130 SAPCD2Q86UD0 394 aa7.4□□□□□ -1.22
VPS29-210ENST00000552130 SNX32Q86XE0 403 aa7.4□□□□□ -1.22
VPS29-210ENST00000552130 NUP133Q8WUM0 1156 aa7.4□□□□□ -1.22
VPS29-210ENST00000552130 ZNF496Q96IT1 587 aaPredicted RBP7.4□□□□□ -1.22
VPS29-210ENST00000552130 SGCZQ96LD1 299 aa7.4□□□□□ -1.22
VPS29-210ENST00000552130 ISCA1Q9BUE6 129 aa7.4□□□□□ -1.22
VPS29-210ENST00000552130 SLC12A5Q9H2X9 1139 aa7.4□□□□□ -1.22
VPS29-210ENST00000552130 TRIM39Q9HCM9 518 aa7.4□□□□□ -1.22
VPS29-210ENST00000552130 ALG13Q9NP73 1137 aaKnown RBP7.4□□□□□ -1.22
VPS29-210ENST00000552130 SMYD2Q9NRG4 433 aa7.4□□□□□ -1.22
VPS29-210ENST00000552130 FBXO10Q9UK96 956 aa7.4□□□□□ -1.22
VPS29-210ENST00000552130 TPCN1Q9ULQ1 816 aa7.4□□□□□ -1.22
VPS29-210ENST00000552130 PTPN22Q9Y2R2 807 aa7.4□□□□□ -1.22
VPS29-210ENST00000552130 PCDHB5Q9Y5E4 795 aa7.4□□□□□ -1.22
VPS29-210ENST00000552130 PCDHB14Q9Y5E9 798 aa7.4□□□□□ -1.22
VPS29-210ENST00000552130 SLC12A7Q9Y666 1083 aa7.4□□□□□ -1.22
VPS29-210ENST00000552130 FZD9O00144 591 aa7.39□□□□□ -1.23
VPS29-210ENST00000552130 FANCGO15287 622 aa7.39□□□□□ -1.23
VPS29-210ENST00000552130 GDNFP39905 211 aa7.39□□□□□ -1.23
VPS29-210ENST00000552130 USP14P54578 494 aa7.39□□□□□ -1.23
VPS29-210ENST00000552130 ZNF460Q14592 562 aa7.39□□□□□ -1.23
VPS29-210ENST00000552130 INTS11Q5TA45 600 aaKnown RBP7.39□□□□□ -1.23
VPS29-210ENST00000552130 AGAP9Q5VTM2 703 aa7.39□□□□□ -1.23
VPS29-210ENST00000552130 YOD1Q5VVQ6 348 aaPredicted RBP7.39□□□□□ -1.23
VPS29-210ENST00000552130 IQSEC1Q6DN90 963 aa7.39□□□□□ -1.23
VPS29-210ENST00000552130 FAAH2Q6GMR7 532 aa7.39□□□□□ -1.23
VPS29-210ENST00000552130 SCUBE1Q8IWY4 988 aa7.39□□□□□ -1.23
VPS29-210ENST00000552130 LMNTD2Q8IXW0 634 aa7.39□□□□□ -1.23
VPS29-210ENST00000552130 FAM43AQ8N2R8 423 aa7.39□□□□□ -1.23
VPS29-210ENST00000552130 OR2W6PQ8NHA6 318 aa7.39□□□□□ -1.23
VPS29-210ENST00000552130 TBC1D20Q96BZ9 403 aa7.39□□□□□ -1.23
VPS29-210ENST00000552130 NECAB3Q96P71 396 aaPredicted RBP7.39□□□□□ -1.23
VPS29-210ENST00000552130 NUP88Q99567 741 aaPredicted RBP7.39□□□□□ -1.23
VPS29-210ENST00000552130 ABCF2Q9UG63 623 aa7.39□□□□□ -1.23
VPS29-210ENST00000552130 GPR52Q9Y2T5 361 aa7.39□□□□□ -1.23
VPS29-210ENST00000552130 SH3BP1Q9Y3L3 701 aa7.39□□□□□ -1.23
VPS29-210ENST00000552130 K7ESF4 209 aa7.38□□□□□ -1.23
VPS29-210ENST00000552130 OPA1O60313 960 aa7.38□□□□□ -1.23
VPS29-210ENST00000552130 HSPA6P17066 643 aa7.38□□□□□ -1.23
VPS29-210ENST00000552130 BMP6P22004 513 aa7.38□□□□□ -1.23
VPS29-210ENST00000552130 TM4SF4P48230 202 aa7.38□□□□□ -1.23
VPS29-210ENST00000552130 SUMO1P63165 101 aaKnown RBP7.38□□□□□ -1.23
VPS29-210ENST00000552130 G3BP1Q13283 466 aaKnown RBP eCLIP7.38□□□□□ -1.23
VPS29-210ENST00000552130 PCBP2Q15366 365 aaKnown RBP eCLIP7.38□□□□□ -1.23
VPS29-210ENST00000552130 INAVAQ3KP66 663 aa7.38□□□□□ -1.23
VPS29-210ENST00000552130 GLIPR1L2Q4G1C9 344 aa7.38□□□□□ -1.23
VPS29-210ENST00000552130 TRIM61Q5EBN2 209 aa7.38□□□□□ -1.23
VPS29-210ENST00000552130 ZBTB37Q5TC79 503 aa7.38□□□□□ -1.23
VPS29-210ENST00000552130 VPS53Q5VIR6 699 aa7.38□□□□□ -1.23
VPS29-210ENST00000552130 TBC1D1Q86TI0 1168 aaPredicted RBP7.38□□□□□ -1.23
VPS29-210ENST00000552130 FAM26EQ8N5C1 309 aa7.38□□□□□ -1.23
VPS29-210ENST00000552130 FBXO15Q8NCQ5 510 aaPredicted RBP7.38□□□□□ -1.23
VPS29-210ENST00000552130 CCDC47Q96A33 483 aaKnown RBP7.38□□□□□ -1.23
VPS29-210ENST00000552130 ZBTB10Q96DT7 871 aa7.38□□□□□ -1.23
VPS29-210ENST00000552130 HSPBAP1Q96EW2 488 aa7.38□□□□□ -1.23
VPS29-210ENST00000552130 CCDC138Q96M89 665 aa7.38□□□□□ -1.23
VPS29-210ENST00000552130 FOXQ1Q9C009 403 aa7.38□□□□□ -1.23
VPS29-210ENST00000552130 ANTXR1Q9H6X2 564 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms