RNA–Protein interactions for RNA: ENST00000485450.5

USP4-211, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 3,541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-211ENST00000485450 PFASO15067 1338 aa8.54□□□□□ -1.04
USP4-211ENST00000485450 SCN10AQ9Y5Y9 1956 aa8.54□□□□□ -1.04
USP4-211ENST00000485450 TSPY2A6NKD2 308 aa8.54□□□□□ -1.04
USP4-211ENST00000485450 IMPDH2P12268 514 aa8.54□□□□□ -1.04
USP4-211ENST00000485450 MCM6Q14566 821 aa8.54□□□□□ -1.04
USP4-211ENST00000485450 PKN1Q16512 942 aa8.54□□□□□ -1.04
USP4-211ENST00000485450 Q3C1V9 767 aa8.54□□□□□ -1.04
USP4-211ENST00000485450 FCHSD1Q86WN1 690 aa8.54□□□□□ -1.04
USP4-211ENST00000485450 DDX11Q96FC9 970 aa8.54□□□□□ -1.04
USP4-211ENST00000485450 PGBD1Q96JS3 809 aa8.54□□□□□ -1.04
USP4-211ENST00000485450 PAK6Q9NQU5 681 aaPredicted RBP8.54□□□□□ -1.04
USP4-211ENST00000485450 SUN2Q9UH99 717 aa8.54□□□□□ -1.04
USP4-211ENST00000485450 DOCK3Q8IZD9 2030 aa8.54□□□□□ -1.04
USP4-211ENST00000485450 MAGEA10P43363 369 aaPredicted RBP8.54□□□□□ -1.04
USP4-211ENST00000485450 LIG3P49916 1009 aa8.54□□□□□ -1.04
USP4-211ENST00000485450 SP3Q02447 781 aa8.54□□□□□ -1.04
USP4-211ENST00000485450 NPY5RQ15761 445 aa8.54□□□□□ -1.04
USP4-211ENST00000485450 SYDE2Q5VT97 1194 aa8.54□□□□□ -1.04
USP4-211ENST00000485450 POTEDQ86YR6 584 aa8.54□□□□□ -1.04
USP4-211ENST00000485450 ZNF654Q8IZM8 581 aa8.54□□□□□ -1.04
USP4-211ENST00000485450 ARMC2Q8NEN0 867 aa8.54□□□□□ -1.04
USP4-211ENST00000485450 GPRC5AQ8NFJ5 357 aa8.54□□□□□ -1.04
USP4-211ENST00000485450 MBOAT7Q96N66 472 aa8.54□□□□□ -1.04
USP4-211ENST00000485450 CPSF2Q9P2I0 782 aaKnown RBP8.54□□□□□ -1.04
USP4-211ENST00000485450 SRRDQ9UH36 339 aa8.54□□□□□ -1.04
USP4-211ENST00000485450 TRIM75PA6NK02 468 aa8.54□□□□□ -1.04
USP4-211ENST00000485450 POTEB2H3BUK9 544 aa8.54□□□□□ -1.04
USP4-211ENST00000485450 IFNAR1P17181 557 aa8.54□□□□□ -1.04
USP4-211ENST00000485450 MYBPC2Q14324 1141 aa8.54□□□□□ -1.04
USP4-211ENST00000485450 FAM83BQ5T0W9 1011 aa8.54□□□□□ -1.04
USP4-211ENST00000485450 OTOP1Q7RTM1 612 aa8.54□□□□□ -1.04
USP4-211ENST00000485450 CTU1Q7Z7A3 348 aaKnown RBP8.54□□□□□ -1.04
USP4-211ENST00000485450 CLEC10AQ8IUN9 316 aa8.54□□□□□ -1.04
USP4-211ENST00000485450 SDR16C5Q8N3Y7 309 aa8.54□□□□□ -1.04
USP4-211ENST00000485450 EMID1Q96A84 441 aaPredicted RBP8.54□□□□□ -1.04
USP4-211ENST00000485450 MOV10L1Q9BXT6 1211 aaKnown RBP8.54□□□□□ -1.04
USP4-211ENST00000485450 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.54□□□□□ -1.042e-15■■■■■ 372.6
USP4-211ENST00000485450 ANO10Q9NW15 660 aa8.54□□□□□ -1.04
USP4-211ENST00000485450 FBXO40Q9UH90 709 aa8.54□□□□□ -1.04
USP4-211ENST00000485450 PRPF3O43395 683 aaKnown RBP8.53□□□□□ -1.04
USP4-211ENST00000485450 LARP1BQ659C4 914 aaKnown RBP8.53□□□□□ -1.04
USP4-211ENST00000485450 FBXO46Q6PJ61 603 aaPredicted RBP8.53□□□□□ -1.04
USP4-211ENST00000485450 DNERQ8NFT8 737 aa8.53□□□□□ -1.04
USP4-211ENST00000485450 ZNF333Q96JL9 665 aa8.53□□□□□ -1.04
USP4-211ENST00000485450 LARP6Q9BRS8 491 aaKnown RBP8.53□□□□□ -1.04
USP4-211ENST00000485450 ZNF408Q9H9D4 720 aa8.53□□□□□ -1.04
USP4-211ENST00000485450 G3BP2Q9UN86 482 aaKnown RBP8.53□□□□□ -1.04
USP4-211ENST00000485450 Q9Y3F1 56 aa8.53□□□□□ -1.04
USP4-211ENST00000485450 TMCO5BA8MYB1 307 aa8.53□□□□□ -1.04
USP4-211ENST00000485450 PDCP20941 246 aa8.53□□□□□ -1.04
USP4-211ENST00000485450 PDIA3P30101 505 aaKnown RBP8.53□□□□□ -1.04
USP4-211ENST00000485450 GNAQP50148 359 aa8.53□□□□□ -1.04
USP4-211ENST00000485450 FAM173BQ6P4H8 233 aa8.53□□□□□ -1.04
USP4-211ENST00000485450 TMC6Q7Z403 805 aa8.53□□□□□ -1.04
USP4-211ENST00000485450 CCDC84Q86UT8 332 aaPredicted RBP8.53□□□□□ -1.04
USP4-211ENST00000485450 RBM12BQ8IXT5 1001 aaKnown RBP8.53□□□□□ -1.04
USP4-211ENST00000485450 MSANTD4Q8NCY6 345 aa8.53□□□□□ -1.04
USP4-211ENST00000485450 BICD2Q8TD16 824 aa8.53□□□□□ -1.04
USP4-211ENST00000485450 LLPHQ9BRT6 129 aaKnown RBP8.53□□□□□ -1.04
USP4-211ENST00000485450 VWA3AA6NCI4 1184 aa8.53□□□□□ -1.04
USP4-211ENST00000485450 ZSCAN12O43309 604 aa8.53□□□□□ -1.04
USP4-211ENST00000485450 ERLIN1O75477 346 aa8.53□□□□□ -1.04
USP4-211ENST00000485450 PRDM1O75626 825 aa8.53□□□□□ -1.04
USP4-211ENST00000485450 CST5P28325 142 aaPredicted RBP8.53□□□□□ -1.04
USP4-211ENST00000485450 TMEM62Q0P6H9 643 aa8.53□□□□□ -1.04
USP4-211ENST00000485450 WTAPQ15007 396 aa8.53□□□□□ -1.04
USP4-211ENST00000485450 ANKRD1Q15327 319 aa8.53□□□□□ -1.04
USP4-211ENST00000485450 HSP90B2PQ58FF3 399 aa8.53□□□□□ -1.04
USP4-211ENST00000485450 C1orf53Q5VUE5 145 aa8.53□□□□□ -1.04
USP4-211ENST00000485450 GPR142Q7Z601 462 aa8.53□□□□□ -1.04
USP4-211ENST00000485450 ADGRF4Q8IZF3 695 aa8.53□□□□□ -1.04
USP4-211ENST00000485450 ACRBPQ8NEB7 543 aa8.53□□□□□ -1.04
USP4-211ENST00000485450 TNFRSF25Q93038 417 aa8.53□□□□□ -1.04
USP4-211ENST00000485450 CABS1Q96KC9 395 aa8.53□□□□□ -1.04
USP4-211ENST00000485450 ARPC5LQ9BPX5 153 aa8.53□□□□□ -1.04
USP4-211ENST00000485450 TEX13BQ9BXU2 312 aa8.53□□□□□ -1.04
USP4-211ENST00000485450 RNF26Q9BY78 433 aaPredicted RBP8.53□□□□□ -1.04
USP4-211ENST00000485450 FAM204AQ9H8W3 233 aa8.53□□□□□ -1.04
USP4-211ENST00000485450 PNMA6FA0A0J9YX94 578 aa8.52□□□□□ -1.05
USP4-211ENST00000485450 ZBTB5O15062 677 aa8.52□□□□□ -1.05
USP4-211ENST00000485450 TPD52L2O43399 206 aaKnown RBP8.52□□□□□ -1.05
USP4-211ENST00000485450 CTDNEP1O95476 244 aa8.52□□□□□ -1.05
USP4-211ENST00000485450 ZKSCAN1P17029 563 aaPredicted RBP8.52□□□□□ -1.05
USP4-211ENST00000485450 MNX1P50219 401 aaPredicted RBP8.52□□□□□ -1.05
USP4-211ENST00000485450 HAND2P61296 217 aa8.52□□□□□ -1.05
USP4-211ENST00000485450 TAF1CQ15572 869 aaPredicted RBP8.52□□□□□ -1.05
USP4-211ENST00000485450 IFIT1BQ5T764 474 aaKnown RBP8.52□□□□□ -1.05
USP4-211ENST00000485450 CEP57L1Q8IYX8 460 aa8.52□□□□□ -1.05
USP4-211ENST00000485450 SRBD1Q8N5C6 995 aaKnown RBP8.52□□□□□ -1.05
USP4-211ENST00000485450 SLAIN1Q8ND83 568 aa8.52□□□□□ -1.05
USP4-211ENST00000485450 APBA2Q99767 749 aa8.52□□□□□ -1.05
USP4-211ENST00000485450 NAT10Q9H0A0 1025 aaKnown RBP8.52□□□□□ -1.05
USP4-211ENST00000485450 ANKZF1Q9H8Y5 726 aa8.52□□□□□ -1.05
USP4-211ENST00000485450 FAM169AQ9Y6X4 670 aa8.52□□□□□ -1.05
USP4-211ENST00000485450 MCM3APO60318 1980 aa8.52□□□□□ -1.05
USP4-211ENST00000485450 EDIL3O43854 480 aa8.52□□□□□ -1.05
USP4-211ENST00000485450 SHOX2O60902 331 aaPredicted RBP8.52□□□□□ -1.05
USP4-211ENST00000485450 NEFHP12036 1026 aa8.52□□□□□ -1.05
USP4-211ENST00000485450 CYBAP13498 195 aa8.52□□□□□ -1.05
USP4-211ENST00000485450 FCGRTP55899 365 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms