RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 FAM86B2P0C5J1 330 aa22.98■■□□□ 1.27
SS18-218ENST00000581021 ARP10275 920 aa22.98■■□□□ 1.27
SS18-218ENST00000581021 GNA11P29992 359 aa22.98■■□□□ 1.27
SS18-218ENST00000581021 EPHB4P54760 987 aa22.98■■□□□ 1.27
SS18-218ENST00000581021 CHMP4BP1P59074 171 aa22.98■■□□□ 1.27
SS18-218ENST00000581021 NEDD9Q14511 834 aa22.98■■□□□ 1.27
SS18-218ENST00000581021 CEP55Q53EZ4 464 aa22.98■■□□□ 1.27
SS18-218ENST00000581021 NFRKBQ6P4R8 1299 aa22.98■■□□□ 1.27
SS18-218ENST00000581021 LBHD1Q9BQE6 289 aaPredicted RBP22.98■■□□□ 1.27
SS18-218ENST00000581021 UBE2OQ9C0C9 1292 aaKnown RBP22.98■■□□□ 1.27
SS18-218ENST00000581021 KCNH7Q9NS40 1196 aa22.98■■□□□ 1.27
SS18-218ENST00000581021 IGLV3-22A0A075B6J6 115 aa22.97■■□□□ 1.27
SS18-218ENST00000581021 M0R2N6 131 aa22.97■■□□□ 1.27
SS18-218ENST00000581021 MEIS1O00470 390 aa22.97■■□□□ 1.27
SS18-218ENST00000581021 JAK2O60674 1132 aa22.97■■□□□ 1.27
SS18-218ENST00000581021 PPFIA4O75335 1185 aa22.97■■□□□ 1.27
SS18-218ENST00000581021 CDKL5O76039 1030 aa22.97■■□□□ 1.27
SS18-218ENST00000581021 PSEN2P49810 448 aa22.97■■□□□ 1.27
SS18-218ENST00000581021 SP4Q02446 784 aa22.97■■□□□ 1.27
SS18-218ENST00000581021 HIC1Q14526 733 aa22.97■■□□□ 1.27
SS18-218ENST00000581021 FAM47CQ5HY64 1035 aa22.97■■□□□ 1.27
SS18-218ENST00000581021 TRIM50Q86XT4 487 aa22.97■■□□□ 1.27
SS18-218ENST00000581021 NSUN7Q8NE18 718 aaKnown RBP22.97■■□□□ 1.27
SS18-218ENST00000581021 KCNJ14Q9UNX9 436 aa22.97■■□□□ 1.27
SS18-218ENST00000581021 TLR3O15455 904 aaKnown RBP22.96■■□□□ 1.27
SS18-218ENST00000581021 TIMP1P01033 207 aa22.96■■□□□ 1.27
SS18-218ENST00000581021 LGALS2P05162 132 aa22.96■■□□□ 1.27
SS18-218ENST00000581021 CYP3A4P08684 503 aa22.96■■□□□ 1.27
SS18-218ENST00000581021 CYP2C9P11712 490 aa22.96■■□□□ 1.27
SS18-218ENST00000581021 RAG1P15918 1043 aa22.96■■□□□ 1.27
SS18-218ENST00000581021 NLRP5P59047 1200 aa22.96■■□□□ 1.27
SS18-218ENST00000581021 ITGB3BPQ13352 177 aaPredicted RBP22.96■■□□□ 1.27
SS18-218ENST00000581021 MFSD10Q14728 455 aa22.96■■□□□ 1.27
SS18-218ENST00000581021 CDHR1Q96JP9 859 aa22.96■■□□□ 1.27
SS18-218ENST00000581021 NOC4LQ9BVI4 516 aaKnown RBP22.96■■□□□ 1.27
SS18-218ENST00000581021 SEZ6LQ9BYH1 1024 aa22.96■■□□□ 1.27
SS18-218ENST00000581021 PPP1R12CQ9BZL4 782 aa22.96■■□□□ 1.27
SS18-218ENST00000581021 PCDHA4Q9UN74 947 aa22.96■■□□□ 1.27
SS18-218ENST00000581021 SZT2Q5T011 3432 aa22.96■■□□□ 1.27
SS18-218ENST00000581021 RBAK-RBAKDNI3L0D1 243 aa22.95■■□□□ 1.26
SS18-218ENST00000581021 LAMA2P24043 3122 aaKnown RBP22.95■■□□□ 1.26
SS18-218ENST00000581021 CYP2C18P33260 490 aa22.95■■□□□ 1.26
SS18-218ENST00000581021 KIAA0753Q2KHM9 967 aa22.95■■□□□ 1.26
SS18-218ENST00000581021 GDF6Q6KF10 455 aaPredicted RBP22.95■■□□□ 1.26
SS18-218ENST00000581021 DAGLBQ8NCG7 672 aa22.95■■□□□ 1.26
SS18-218ENST00000581021 BICD2Q8TD16 824 aa22.95■■□□□ 1.26
SS18-218ENST00000581021 AGO4Q9HCK5 861 aaKnown RBP22.95■■□□□ 1.26
SS18-218ENST00000581021 ORC3Q9UBD5 711 aaPredicted RBP22.95■■□□□ 1.26
SS18-218ENST00000581021 NOP56O00567 594 aaKnown RBP22.94■■□□□ 1.26
SS18-218ENST00000581021 FXR1P51114 621 aaKnown RBP eCLIP22.94■■□□□ 1.26
SS18-218ENST00000581021 C9orf50Q5SZB4 431 aa22.94■■□□□ 1.26
SS18-218ENST00000581021 SESTD1Q86VW0 696 aa22.94■■□□□ 1.26
SS18-218ENST00000581021 LENG9Q96B70 501 aa22.94■■□□□ 1.26
SS18-218ENST00000581021 UIMC1Q96RL1 719 aa22.94■■□□□ 1.26
SS18-218ENST00000581021 ALG1Q9BT22 464 aa22.94■■□□□ 1.26
SS18-218ENST00000581021 PHF20Q9BVI0 1012 aa22.94■■□□□ 1.26
SS18-218ENST00000581021 WNT8AQ9H1J5 351 aa22.94■■□□□ 1.26
SS18-218ENST00000581021 HDAC6Q9UBN7 1215 aa22.94■■□□□ 1.26
SS18-218ENST00000581021 LIMCH1Q9UPQ0 1083 aa22.94■■□□□ 1.26
SS18-218ENST00000581021 A0A1W2PPC1 479 aa22.93■■□□□ 1.26
SS18-218ENST00000581021 GSTTP1A0A1W2PQM5 241 aa22.93■■□□□ 1.26
SS18-218ENST00000581021 SOX1O00570 391 aaPredicted RBP22.93■■□□□ 1.26
SS18-218ENST00000581021 PTPN11Q06124 597 aaPredicted RBP22.93■■□□□ 1.26
SS18-218ENST00000581021 TDHQ8IZJ6 230 aa22.93■■□□□ 1.26
SS18-218ENST00000581021 BLIDQ8IZY5 108 aa22.93■■□□□ 1.26
SS18-218ENST00000581021 TBC1D32Q96NH3 1257 aa22.93■■□□□ 1.26
SS18-218ENST00000581021 HIPK3Q9H422 1215 aa22.93■■□□□ 1.26
SS18-218ENST00000581021 MAFGO15525 162 aa22.92■■□□□ 1.26
SS18-218ENST00000581021 MCTP2Q6DN12 878 aa22.92■■□□□ 1.26
SS18-218ENST00000581021 MFSD5Q6N075 450 aa22.92■■□□□ 1.26
SS18-218ENST00000581021 NIPA1Q7RTP0 329 aa22.92■■□□□ 1.26
SS18-218ENST00000581021 GIMAP8Q8ND71 665 aaPredicted RBP22.92■■□□□ 1.26
SS18-218ENST00000581021 OXER1Q8TDS5 423 aa22.92■■□□□ 1.26
SS18-218ENST00000581021 VWCEQ96DN2 955 aa22.92■■□□□ 1.26
SS18-218ENST00000581021 JPH1Q9HDC5 661 aaPredicted RBP22.92■■□□□ 1.26
SS18-218ENST00000581021 GTF2IRD1Q9UHL9 959 aa22.92■■□□□ 1.26
SS18-218ENST00000581021 CD2BP2O95400 341 aaKnown RBP22.91■■□□□ 1.26
SS18-218ENST00000581021 CSF2RAP15509 400 aa22.91■■□□□ 1.26
SS18-218ENST00000581021 CIITAP33076 1130 aa22.91■■□□□ 1.26
SS18-218ENST00000581021 ZNF76P36508 570 aa22.91■■□□□ 1.26
SS18-218ENST00000581021 ZNF200P98182 395 aaPredicted RBP22.91■■□□□ 1.26
SS18-218ENST00000581021 FPGSQ05932 587 aa22.91■■□□□ 1.26
SS18-218ENST00000581021 UTP14CQ5TAP6 766 aaKnown RBP22.91■■□□□ 1.26
SS18-218ENST00000581021 C16orf59Q7L2K0 433 aa22.91■■□□□ 1.26
SS18-218ENST00000581021 PLA2G4DQ86XP0 818 aa22.91■■□□□ 1.26
SS18-218ENST00000581021 CCDC83Q8IWF9 413 aa22.91■■□□□ 1.26
SS18-218ENST00000581021 FAM177A1Q8N128 213 aaPredicted RBP22.91■■□□□ 1.26
SS18-218ENST00000581021 DHX38Q92620 1227 aaKnown RBP22.91■■□□□ 1.26
SS18-218ENST00000581021 PCYT2Q99447 389 aa22.91■■□□□ 1.26
SS18-218ENST00000581021 KATNAL1Q9BW62 490 aa22.91■■□□□ 1.26
SS18-218ENST00000581021 NFASCO94856 1347 aa22.9■■□□□ 1.26
SS18-218ENST00000581021 H3BRB1 525 aa22.9■■□□□ 1.26
SS18-218ENST00000581021 DHX15O43143 795 aaKnown RBP22.9■■□□□ 1.26
SS18-218ENST00000581021 CCNE2O96020 404 aa22.9■■□□□ 1.26
SS18-218ENST00000581021 HOXC8P31273 242 aa22.9■■□□□ 1.26
SS18-218ENST00000581021 TCF7P36402 384 aaPredicted RBP22.9■■□□□ 1.26
SS18-218ENST00000581021 RABEP1Q15276 862 aa22.9■■□□□ 1.26
SS18-218ENST00000581021 SHHQ15465 462 aa22.9■■□□□ 1.26
SS18-218ENST00000581021 PTGISQ16647 500 aa22.9■■□□□ 1.26
SS18-218ENST00000581021 C7orf31Q8N865 590 aa22.9■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 80.4 ms