RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 DDB1Q16531 1140 aa19.31■□□□□ 0.68
SYNE3-202ENST00000553340 NAA35Q5VZE5 725 aa19.31■□□□□ 0.68
SYNE3-202ENST00000553340 CNPY4Q8N129 248 aa19.31■□□□□ 0.68
SYNE3-202ENST00000553340 PAGR1Q9BTK6 254 aa19.31■□□□□ 0.68
SYNE3-202ENST00000553340 PPP4CP60510 307 aa19.3■□□□□ 0.68
SYNE3-202ENST00000553340 MAPKAPK5Q8IW41 473 aa19.3■□□□□ 0.68
SYNE3-202ENST00000553340 NUDT12Q9BQG2 462 aa19.3■□□□□ 0.68
SYNE3-202ENST00000553340 CDCA7Q9BWT1 371 aaPredicted RBP19.3■□□□□ 0.68
SYNE3-202ENST00000553340 H0YHG0 523 aa19.3■□□□□ 0.68
SYNE3-202ENST00000553340 hCG_1984214I3L0E3 225 aa19.3■□□□□ 0.68
SYNE3-202ENST00000553340 TDP2O95551 362 aa19.3■□□□□ 0.68
SYNE3-202ENST00000553340 GNA14O95837 355 aa19.3■□□□□ 0.68
SYNE3-202ENST00000553340 COASYQ13057 564 aa19.3■□□□□ 0.68
SYNE3-202ENST00000553340 RAPGEF1Q13905 1077 aa19.3■□□□□ 0.68
SYNE3-202ENST00000553340 SEPT2Q15019 361 aa19.3■□□□□ 0.68
SYNE3-202ENST00000553340 DIXDC1Q155Q3 683 aa19.3■□□□□ 0.68
SYNE3-202ENST00000553340 PTGISQ16647 500 aa19.3■□□□□ 0.68
SYNE3-202ENST00000553340 TMEM119Q4V9L6 283 aa19.3■□□□□ 0.68
SYNE3-202ENST00000553340 KCNK18Q7Z418 384 aa19.3■□□□□ 0.68
SYNE3-202ENST00000553340 ZNF713Q8N859 430 aaPredicted RBP19.3■□□□□ 0.68
SYNE3-202ENST00000553340 PRPF38AQ8NAV1 312 aaKnown RBP19.3■□□□□ 0.68
SYNE3-202ENST00000553340 USP38Q8NB14 1042 aa19.3■□□□□ 0.68
SYNE3-202ENST00000553340 NEDD1Q8NHV4 660 aa19.3■□□□□ 0.68
SYNE3-202ENST00000553340 TAF4BQ92750 862 aa19.3■□□□□ 0.68
SYNE3-202ENST00000553340 CEP63Q96MT8 703 aa19.3■□□□□ 0.68
SYNE3-202ENST00000553340 PACSIN2Q9UNF0 486 aaPredicted RBP19.3■□□□□ 0.68
SYNE3-202ENST00000553340 A0A087X0T9 212 aa19.29■□□□□ 0.68
SYNE3-202ENST00000553340 GOLGA6L10A6NI86 522 aa19.29■□□□□ 0.68
SYNE3-202ENST00000553340 FAM228BP0C875 321 aa19.29■□□□□ 0.68
SYNE3-202ENST00000553340 HSPA9P38646 679 aaKnown RBP19.29■□□□□ 0.68
SYNE3-202ENST00000553340 MDH1P40925 334 aaKnown RBP19.29■□□□□ 0.68
SYNE3-202ENST00000553340 RNASE9P60153 205 aaKnown RBP19.29■□□□□ 0.68
SYNE3-202ENST00000553340 KLHL30Q0D2K2 578 aa19.29■□□□□ 0.68
SYNE3-202ENST00000553340 MAATS1Q7Z4T9 603 aa19.29■□□□□ 0.68
SYNE3-202ENST00000553340 YTHDF3Q7Z739 585 aaKnown RBP19.29■□□□□ 0.68
SYNE3-202ENST00000553340 UTP18Q9Y5J1 556 aaKnown RBP eCLIP19.29■□□□□ 0.68
SYNE3-202ENST00000553340 RAD51CO43502 376 aa19.29■□□□□ 0.68
SYNE3-202ENST00000553340 FSBPO95073 299 aa19.29■□□□□ 0.68
SYNE3-202ENST00000553340 CDK8P49336 464 aa19.29■□□□□ 0.68
SYNE3-202ENST00000553340 MNAT1P51948 309 aa19.29■□□□□ 0.68
SYNE3-202ENST00000553340 ARID5AQ03989 594 aa19.29■□□□□ 0.68
SYNE3-202ENST00000553340 FAM26FQ5R3K3 315 aa19.29■□□□□ 0.68
SYNE3-202ENST00000553340 ZNF473Q8WTR7 871 aaKnown RBP19.29■□□□□ 0.68
SYNE3-202ENST00000553340 TAF1DQ9H5J8 278 aaPredicted RBP19.29■□□□□ 0.68
SYNE3-202ENST00000553340 POLD4Q9HCU8 107 aa19.29■□□□□ 0.68
SYNE3-202ENST00000553340 ADAMTS1Q9UHI8 967 aa19.29■□□□□ 0.68
SYNE3-202ENST00000553340 PLAAQ9Y263 795 aa19.29■□□□□ 0.68
SYNE3-202ENST00000553340 LDHCP07864 332 aa19.28■□□□□ 0.68
SYNE3-202ENST00000553340 ADCY7P51828 1080 aa19.28■□□□□ 0.68
SYNE3-202ENST00000553340 CEP85LQ5SZL2 805 aa19.28■□□□□ 0.68
SYNE3-202ENST00000553340 TBC1D9BQ66K14 1250 aa19.28■□□□□ 0.68
SYNE3-202ENST00000553340 KCNV1Q6PIU1 500 aa19.28■□□□□ 0.68
SYNE3-202ENST00000553340 KLHL7Q8IXQ5 586 aa19.28■□□□□ 0.68
SYNE3-202ENST00000553340 EIF1ADQ8N9N8 165 aaKnown RBP19.28■□□□□ 0.68
SYNE3-202ENST00000553340 DNAJC19Q96DA6 116 aa19.28■□□□□ 0.68
SYNE3-202ENST00000553340 NYXQ9GZU5 481 aa19.28■□□□□ 0.68
SYNE3-202ENST00000553340 UBA5Q9GZZ9 404 aa19.28■□□□□ 0.68
SYNE3-202ENST00000553340 BMP2KQ9NSY1 1161 aaPredicted RBP19.28■□□□□ 0.68
SYNE3-202ENST00000553340 PANK4Q9NVE7 773 aa19.28■□□□□ 0.68
SYNE3-202ENST00000553340 AIPL1Q9NZN9 384 aa19.28■□□□□ 0.68
SYNE3-202ENST00000553340 NAV1Q8NEY1 1877 aa19.28■□□□□ 0.68
SYNE3-202ENST00000553340 CES2O00748 559 aa19.28■□□□□ 0.68
SYNE3-202ENST00000553340 ITGB3BPQ13352 177 aaPredicted RBP19.28■□□□□ 0.68
SYNE3-202ENST00000553340 SRRM3A6NNA2 597 aaPredicted RBP19.27■□□□□ 0.68
SYNE3-202ENST00000553340 MYBP10242 640 aa19.27■□□□□ 0.68
SYNE3-202ENST00000553340 FNTAP49354 379 aa19.27■□□□□ 0.68
SYNE3-202ENST00000553340 HLTFQ14527 1009 aaKnown RBP eCLIP19.27■□□□□ 0.68
SYNE3-202ENST00000553340 RPS6KA1Q15418 735 aa19.27■□□□□ 0.68
SYNE3-202ENST00000553340 TRADDQ15628 312 aa19.27■□□□□ 0.68
SYNE3-202ENST00000553340 ASIC2Q16515 512 aa19.27■□□□□ 0.68
SYNE3-202ENST00000553340 C16orf86Q6ZW13 317 aa19.27■□□□□ 0.68
SYNE3-202ENST00000553340 NLRP14Q86W24 1093 aa19.27■□□□□ 0.68
SYNE3-202ENST00000553340 TRIM59Q8IWR1 403 aa19.27■□□□□ 0.68
SYNE3-202ENST00000553340 ARFGAP2Q8N6H7 521 aa19.27■□□□□ 0.68
SYNE3-202ENST00000553340 CCT8L2Q96SF2 557 aa19.27■□□□□ 0.68
SYNE3-202ENST00000553340 ISCUQ9H1K1 167 aa19.27■□□□□ 0.68
SYNE3-202ENST00000553340 RIOX1Q9H6W3 641 aa19.27■□□□□ 0.68
SYNE3-202ENST00000553340 GEMIN8Q9NWZ8 242 aaKnown RBP19.27■□□□□ 0.68
SYNE3-202ENST00000553340 TMEM59LQ9UK28 342 aa19.27■□□□□ 0.68
SYNE3-202ENST00000553340 WNK3Q9BYP7 1800 aa19.27■□□□□ 0.68
SYNE3-202ENST00000553340 SNED1Q8TER0 1413 aa19.27■□□□□ 0.68
SYNE3-202ENST00000553340 MARSP56192 900 aaKnown RBP19.27■□□□□ 0.68
SYNE3-202ENST00000553340 LRIG3Q6UXM1 1119 aa19.27■□□□□ 0.68
SYNE3-202ENST00000553340 FAM133AQ8N9E0 248 aa19.27■□□□□ 0.68
SYNE3-202ENST00000553340 MYCBPAPQ8TBZ2 947 aa19.27■□□□□ 0.68
SYNE3-202ENST00000553340 PACSIN1Q9BY11 444 aa19.27■□□□□ 0.68
SYNE3-202ENST00000553340 PLCB1Q9NQ66 1216 aa19.27■□□□□ 0.68
SYNE3-202ENST00000553340 IRS2Q9Y4H2 1338 aa19.27■□□□□ 0.67
SYNE3-202ENST00000553340 EPS15P42566 896 aa19.26■□□□□ 0.67
SYNE3-202ENST00000553340 ENOX2Q16206 610 aaKnown RBP19.26■□□□□ 0.67
SYNE3-202ENST00000553340 PPP4R3AQ6IN85 833 aa19.26■□□□□ 0.67
SYNE3-202ENST00000553340 CEP95Q96GE4 821 aa19.26■□□□□ 0.67
SYNE3-202ENST00000553340 CABS1Q96KC9 395 aa19.26■□□□□ 0.67
SYNE3-202ENST00000553340 TMBIM4Q9HC24 238 aa19.26■□□□□ 0.67
SYNE3-202ENST00000553340 ROBO1Q9Y6N7 1651 aa19.26■□□□□ 0.67
SYNE3-202ENST00000553340 USP17L5A8MUK1 530 aa19.26■□□□□ 0.67
SYNE3-202ENST00000553340 BTNL10A8MVZ5 291 aa19.26■□□□□ 0.67
SYNE3-202ENST00000553340 KCNK3O14649 394 aa19.26■□□□□ 0.67
SYNE3-202ENST00000553340 FAM107AO95990 144 aa19.26■□□□□ 0.67
SYNE3-202ENST00000553340 SETQ01105 290 aaPredicted RBP19.26■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms