RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 CCDC171Q6TFL3 1326 aa9.69□□□□□ -0.86
VPS13D-212ENST00000543766 ZBTB7BO15156 539 aaPredicted RBP9.69□□□□□ -0.86
VPS13D-212ENST00000543766 CDC25BP30305 580 aa9.69□□□□□ -0.86
VPS13D-212ENST00000543766 MTHFRP42898 656 aa9.69□□□□□ -0.86
VPS13D-212ENST00000543766 HAAOP46952 286 aa9.69□□□□□ -0.86
VPS13D-212ENST00000543766 TTC22Q5TAA0 569 aa9.69□□□□□ -0.86
VPS13D-212ENST00000543766 TWF2Q6IBS0 349 aaKnown RBP9.69□□□□□ -0.86
VPS13D-212ENST00000543766 CYP26C1Q6V0L0 522 aa9.69□□□□□ -0.86
VPS13D-212ENST00000543766 ZNF365Q70YC5 407 aa9.69□□□□□ -0.86
VPS13D-212ENST00000543766 ZNF804AQ7Z570 1209 aa9.69□□□□□ -0.86
VPS13D-212ENST00000543766 SELENOSQ9BQE4 189 aa9.69□□□□□ -0.86
VPS13D-212ENST00000543766 TMEM206Q9H813 350 aa9.69□□□□□ -0.86
VPS13D-212ENST00000543766 CHMLP26374 656 aa9.69□□□□□ -0.86
VPS13D-212ENST00000543766 NR2C2P49116 596 aa9.69□□□□□ -0.86
VPS13D-212ENST00000543766 MDM2Q00987 491 aaPredicted RBP9.69□□□□□ -0.86
VPS13D-212ENST00000543766 TBL3Q12788 808 aaKnown RBP9.69□□□□□ -0.86
VPS13D-212ENST00000543766 BOLA3Q53S33 107 aa9.69□□□□□ -0.86
VPS13D-212ENST00000543766 ITPRIPQ8IWB1 547 aa9.69□□□□□ -0.86
VPS13D-212ENST00000543766 CCAR2Q8N163 923 aaKnown RBP9.69□□□□□ -0.86
VPS13D-212ENST00000543766 NOC3LQ8WTT2 800 aaKnown RBP9.69□□□□□ -0.86
VPS13D-212ENST00000543766 TIFAQ96CG3 184 aa9.69□□□□□ -0.86
VPS13D-212ENST00000543766 PGBD4Q96DM1 585 aa9.69□□□□□ -0.86
VPS13D-212ENST00000543766 A1CFQ9NQ94 594 aaKnown RBP9.69□□□□□ -0.86
VPS13D-212ENST00000543766 TULP4Q9NRJ4 1543 aa9.68□□□□□ -0.86
VPS13D-212ENST00000543766 CHL1O00533 1208 aa9.68□□□□□ -0.86
VPS13D-212ENST00000543766 SNPHO15079 494 aa9.68□□□□□ -0.86
VPS13D-212ENST00000543766 DNAJC6O75061 913 aa9.68□□□□□ -0.86
VPS13D-212ENST00000543766 LARGE1O95461 756 aa9.68□□□□□ -0.86
VPS13D-212ENST00000543766 GSTO1P78417 241 aa9.68□□□□□ -0.86
VPS13D-212ENST00000543766 LRRC74AQ0VAA2 488 aa9.68□□□□□ -0.86
VPS13D-212ENST00000543766 CPXCR1Q8N123 301 aa9.68□□□□□ -0.86
VPS13D-212ENST00000543766 PPHLN1Q8NEY8 458 aaKnown RBP9.68□□□□□ -0.86
VPS13D-212ENST00000543766 KLHDC4Q8TBB5 520 aa9.68□□□□□ -0.86
VPS13D-212ENST00000543766 SMC6Q96SB8 1091 aa9.68□□□□□ -0.86
VPS13D-212ENST00000543766 RGS12O14924 1447 aa9.68□□□□□ -0.86
VPS13D-212ENST00000543766 LRRD1A4D1F6 860 aa9.68□□□□□ -0.86
VPS13D-212ENST00000543766 TMEM221A6NGB7 291 aa9.68□□□□□ -0.86
VPS13D-212ENST00000543766 A8MX80 341 aa9.68□□□□□ -0.86
VPS13D-212ENST00000543766 NCK2O43639 380 aa9.68□□□□□ -0.86
VPS13D-212ENST00000543766 EXTL3O43909 919 aa9.68□□□□□ -0.86
VPS13D-212ENST00000543766 ERFP50548 548 aa9.68□□□□□ -0.86
VPS13D-212ENST00000543766 SLC12A2P55011 1212 aa9.68□□□□□ -0.86
VPS13D-212ENST00000543766 SP140Q13342 867 aa9.68□□□□□ -0.86
VPS13D-212ENST00000543766 ERCC6LQ2NKX8 1250 aa9.68□□□□□ -0.86
VPS13D-212ENST00000543766 KIF6Q6ZMV9 814 aa9.68□□□□□ -0.86
VPS13D-212ENST00000543766 TTLL7Q6ZT98 887 aa9.68□□□□□ -0.86
VPS13D-212ENST00000543766 FAM200AQ8TCP9 573 aa9.68□□□□□ -0.86
VPS13D-212ENST00000543766 MAIP1Q8WWC4 291 aa9.68□□□□□ -0.86
VPS13D-212ENST00000543766 DHX58Q96C10 678 aa9.68□□□□□ -0.86
VPS13D-212ENST00000543766 OPTNQ96CV9 577 aa9.68□□□□□ -0.86
VPS13D-212ENST00000543766 RBM18Q96H35 190 aaKnown RBP9.68□□□□□ -0.86
VPS13D-212ENST00000543766 FAM126AQ9BYI3 521 aaPredicted RBP9.68□□□□□ -0.86
VPS13D-212ENST00000543766 VRTNQ9H8Y1 702 aa9.68□□□□□ -0.86
VPS13D-212ENST00000543766 DBNDD1Q9H9R9 158 aa9.68□□□□□ -0.86
VPS13D-212ENST00000543766 TUFT1Q9NNX1 390 aa9.68□□□□□ -0.86
VPS13D-212ENST00000543766 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP9.68□□□□□ -0.86
VPS13D-212ENST00000543766 SH3GLB1Q9Y371 365 aa9.68□□□□□ -0.86
VPS13D-212ENST00000543766 HTR3EA5X5Y0 456 aa9.68□□□□□ -0.86
VPS13D-212ENST00000543766 M0QX08 132 aa9.68□□□□□ -0.86
VPS13D-212ENST00000543766 CCT5P48643 541 aa9.68□□□□□ -0.86
VPS13D-212ENST00000543766 UBE2HP62256 183 aa9.68□□□□□ -0.86
VPS13D-212ENST00000543766 BYSLQ13895 437 aaKnown RBP9.68□□□□□ -0.86
VPS13D-212ENST00000543766 SNCBQ16143 134 aa9.68□□□□□ -0.86
VPS13D-212ENST00000543766 KIAA1614Q5VZ46 1190 aa9.68□□□□□ -0.86
VPS13D-212ENST00000543766 TMEM214Q6NUQ4 689 aaKnown RBP9.68□□□□□ -0.86
VPS13D-212ENST00000543766 ISLR2Q6UXK2 745 aa9.68□□□□□ -0.86
VPS13D-212ENST00000543766 STK32CQ86UX6 486 aa9.68□□□□□ -0.86
VPS13D-212ENST00000543766 CEP112Q8N8E3 955 aa9.68□□□□□ -0.86
VPS13D-212ENST00000543766 GDAP1Q8TB36 358 aa9.68□□□□□ -0.86
VPS13D-212ENST00000543766 CFAP36Q96G28 342 aa9.68□□□□□ -0.86
VPS13D-212ENST00000543766 GPR108Q9NPR9 543 aa9.68□□□□□ -0.86
VPS13D-212ENST00000543766 ELP1O95163 1332 aa9.67□□□□□ -0.86
VPS13D-212ENST00000543766 B4DLN1 442 aa9.67□□□□□ -0.86
VPS13D-212ENST00000543766 SLU7O95391 586 aaKnown RBP9.67□□□□□ -0.86
VPS13D-212ENST00000543766 LCA5LO95447 670 aa9.67□□□□□ -0.86
VPS13D-212ENST00000543766 APOA4P06727 396 aa9.67□□□□□ -0.86
VPS13D-212ENST00000543766 GBP1P32455 592 aa9.67□□□□□ -0.86
VPS13D-212ENST00000543766 PLCD1P51178 756 aa9.67□□□□□ -0.86
VPS13D-212ENST00000543766 PLTPP55058 493 aa9.67□□□□□ -0.86
VPS13D-212ENST00000543766 TPD52P55327 224 aaPredicted RBP9.67□□□□□ -0.86
VPS13D-212ENST00000543766 KDSRQ06136 332 aa9.67□□□□□ -0.86
VPS13D-212ENST00000543766 CSTF3Q12996 717 aaKnown RBP9.67□□□□□ -0.86
VPS13D-212ENST00000543766 LDLRAD1Q5T700 205 aa9.67□□□□□ -0.86
VPS13D-212ENST00000543766 PGBD3Q8N328 593 aa9.67□□□□□ -0.86
VPS13D-212ENST00000543766 GBP3Q9H0R5 595 aa9.67□□□□□ -0.86
VPS13D-212ENST00000543766 RRN3Q9NYV6 651 aa9.67□□□□□ -0.86
VPS13D-212ENST00000543766 LAMP5Q9UJQ1 280 aa9.67□□□□□ -0.86
VPS13D-212ENST00000543766 ITGB1BP2Q9UKP3 347 aa9.67□□□□□ -0.86
VPS13D-212ENST00000543766 TTC7AQ9ULT0 858 aaPredicted RBP9.67□□□□□ -0.86
VPS13D-212ENST00000543766 FAM169AQ9Y6X4 670 aa9.67□□□□□ -0.86
VPS13D-212ENST00000543766 SLIT1O75093 1534 aa9.67□□□□□ -0.86
VPS13D-212ENST00000543766 ZBTB43O43298 467 aa9.67□□□□□ -0.86
VPS13D-212ENST00000543766 ETV3P41162 512 aa9.67□□□□□ -0.86
VPS13D-212ENST00000543766 DNAJB8Q8NHS0 232 aa9.67□□□□□ -0.86
VPS13D-212ENST00000543766 SPOCK2Q92563 424 aa9.67□□□□□ -0.86
VPS13D-212ENST00000543766 COL3A1P02461 1466 aaPredicted RBP9.67□□□□□ -0.86
VPS13D-212ENST00000543766 TACC1O75410 805 aa9.67□□□□□ -0.86
VPS13D-212ENST00000543766 RFC1P35251 1148 aaPredicted RBP9.67□□□□□ -0.86
VPS13D-212ENST00000543766 HSD17B2P37059 387 aa9.67□□□□□ -0.86
VPS13D-212ENST00000543766 MLLT3P42568 568 aaPredicted RBP9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms