RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 PCDHA6Q9UN73 950 aa12.05□□□□□ -0.48
HDAC6-228ENST00000486227 PCDHA8Q9Y5H6 950 aa12.05□□□□□ -0.48
HDAC6-228ENST00000486227 IKBKGQ9Y6K9 419 aa12.05□□□□□ -0.48
HDAC6-228ENST00000486227 LRRIQ4A6NIV6 560 aa12.05□□□□□ -0.48
HDAC6-228ENST00000486227 HPDP32754 393 aaPredicted RBP12.05□□□□□ -0.48
HDAC6-228ENST00000486227 KRT31Q15323 416 aa12.05□□□□□ -0.48
HDAC6-228ENST00000486227 RCSD1Q6JBY9 416 aa12.05□□□□□ -0.48
HDAC6-228ENST00000486227 ADGRF4Q8IZF3 695 aa12.05□□□□□ -0.48
HDAC6-228ENST00000486227 SAMD15Q9P1V8 674 aa12.05□□□□□ -0.48
HDAC6-228ENST00000486227 MTRF1LQ9UGC7 380 aaKnown RBP12.05□□□□□ -0.48
HDAC6-228ENST00000486227 HPS5Q9UPZ3 1129 aa12.05□□□□□ -0.48
HDAC6-228ENST00000486227 ZBTB22O15209 634 aa12.05□□□□□ -0.48
HDAC6-228ENST00000486227 CFAP221Q4G0U5 840 aa12.05□□□□□ -0.48
HDAC6-228ENST00000486227 LIN9Q5TKA1 542 aa12.05□□□□□ -0.48
HDAC6-228ENST00000486227 FAM160B1Q5W0V3 765 aa12.05□□□□□ -0.48
HDAC6-228ENST00000486227 PPM1KQ8N3J5 372 aa12.05□□□□□ -0.48
HDAC6-228ENST00000486227 BANK1Q8NDB2 785 aa12.05□□□□□ -0.48
HDAC6-228ENST00000486227 CCDC77Q9BR77 488 aa12.05□□□□□ -0.48
HDAC6-228ENST00000486227 KCNJ6P48051 423 aa12.05□□□□□ -0.48
HDAC6-228ENST00000486227 DMP1Q13316 513 aaPredicted RBP12.05□□□□□ -0.48
HDAC6-228ENST00000486227 CTTNQ14247 550 aaKnown RBP12.05□□□□□ -0.48
HDAC6-228ENST00000486227 RUFY4Q6ZNE9 571 aa12.05□□□□□ -0.48
HDAC6-228ENST00000486227 UBL4BQ8N7F7 174 aa12.05□□□□□ -0.48
HDAC6-228ENST00000486227 RNF169Q8NCN4 708 aa12.05□□□□□ -0.48
HDAC6-228ENST00000486227 SUGT1Q9Y2Z0 365 aa12.05□□□□□ -0.48
HDAC6-228ENST00000486227 FGFR2P21802 821 aa12.04□□□□□ -0.48
HDAC6-228ENST00000486227 POLGP54098 1239 aaPredicted RBP12.04□□□□□ -0.48
HDAC6-228ENST00000486227 CASP8Q14790 479 aa12.04□□□□□ -0.48
HDAC6-228ENST00000486227 SLC15A2Q16348 729 aa12.04□□□□□ -0.48
HDAC6-228ENST00000486227 SLC35F6Q8N357 371 aa12.04□□□□□ -0.48
HDAC6-228ENST00000486227 ADPGKQ9BRR6 497 aa12.04□□□□□ -0.48
HDAC6-228ENST00000486227 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.04□□□□□ -0.48
HDAC6-228ENST00000486227 CEP85LQ5SZL2 805 aa12.04□□□□□ -0.48
HDAC6-228ENST00000486227 TTBK2Q6IQ55 1244 aa12.04□□□□□ -0.48
HDAC6-228ENST00000486227 UBLCP1Q8WVY7 318 aaPredicted RBP12.04□□□□□ -0.48
HDAC6-228ENST00000486227 DDX12PQ92771 950 aa12.04□□□□□ -0.48
HDAC6-228ENST00000486227 USTQ9Y2C2 406 aa12.04□□□□□ -0.48
HDAC6-228ENST00000486227 A0A1W2PRG0 241 aa12.04□□□□□ -0.48
HDAC6-228ENST00000486227 TRIM49BA6NDI0 452 aa12.04□□□□□ -0.48
HDAC6-228ENST00000486227 PABPN1LA6NDY0 278 aaKnown RBP12.04□□□□□ -0.48
HDAC6-228ENST00000486227 SOWAHDA6NJG2 315 aa12.04□□□□□ -0.48
HDAC6-228ENST00000486227 GAP43P17677 238 aa12.04□□□□□ -0.48
HDAC6-228ENST00000486227 AP3B2Q13367 1082 aa12.04□□□□□ -0.48
HDAC6-228ENST00000486227 CDHR1Q96JP9 859 aa12.04□□□□□ -0.48
HDAC6-228ENST00000486227 WRNIP1Q96S55 665 aa12.04□□□□□ -0.48
HDAC6-228ENST00000486227 BPIFA3Q9BQP9 254 aa12.04□□□□□ -0.48
HDAC6-228ENST00000486227 MTMR4Q9NYA4 1195 aa12.04□□□□□ -0.48
HDAC6-228ENST00000486227 H0YCG3 227 aa12.03□□□□□ -0.48
HDAC6-228ENST00000486227 ATP2A1O14983 1001 aa12.03□□□□□ -0.48
HDAC6-228ENST00000486227 TDP2O95551 362 aa12.03□□□□□ -0.48
HDAC6-228ENST00000486227 ARHGAP4P98171 946 aa12.03□□□□□ -0.48
HDAC6-228ENST00000486227 MMS22LQ6ZRQ5 1243 aa12.03□□□□□ -0.48
HDAC6-228ENST00000486227 FAM186BQ8IYM0 893 aa12.03□□□□□ -0.48
HDAC6-228ENST00000486227 ACRBPQ8NEB7 543 aa12.03□□□□□ -0.48
HDAC6-228ENST00000486227 POMGNT1Q8WZA1 660 aa12.03□□□□□ -0.48
HDAC6-228ENST00000486227 ATP6V0A1Q93050 837 aa12.03□□□□□ -0.48
HDAC6-228ENST00000486227 TSKSQ9UJT2 592 aa12.03□□□□□ -0.48
HDAC6-228ENST00000486227 FBXO2Q9UK22 296 aaPredicted RBP12.03□□□□□ -0.48
HDAC6-228ENST00000486227 ZNRF3Q9ULT6 936 aa12.03□□□□□ -0.48
HDAC6-228ENST00000486227 H2AFZP0C0S5 128 aa12.03□□□□□ -0.48
HDAC6-228ENST00000486227 ATP2C1P98194 919 aaPredicted RBP12.03□□□□□ -0.48
HDAC6-228ENST00000486227 TCP11X2Q5H9J9 407 aa12.03□□□□□ -0.48
HDAC6-228ENST00000486227 H2AFVQ71UI9 128 aa12.03□□□□□ -0.48
HDAC6-228ENST00000486227 DAAM2Q86T65 1068 aa12.03□□□□□ -0.48
HDAC6-228ENST00000486227 TXNRD3Q86VQ6 643 aa12.03□□□□□ -0.48
HDAC6-228ENST00000486227 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.03□□□□□ -0.48
HDAC6-228ENST00000486227 SELENOSQ9BQE4 189 aa12.03□□□□□ -0.48
HDAC6-228ENST00000486227 POLD4Q9HCU8 107 aa12.03□□□□□ -0.48
HDAC6-228ENST00000486227 SEPT9Q9UHD8 586 aaPredicted RBP12.03□□□□□ -0.48
HDAC6-228ENST00000486227 SFI1A8K8P3 1242 aa12.03□□□□□ -0.48
HDAC6-228ENST00000486227 HNRNPDLO14979 420 aaKnown RBP12.03□□□□□ -0.48
HDAC6-228ENST00000486227 RASA1P20936 1047 aa12.03□□□□□ -0.48
HDAC6-228ENST00000486227 SNX16P57768 344 aa12.03□□□□□ -0.48
HDAC6-228ENST00000486227 SLC10A5Q5PT55 438 aa12.03□□□□□ -0.48
HDAC6-228ENST00000486227 DCUN1D2Q6PH85 259 aa12.03□□□□□ -0.48
HDAC6-228ENST00000486227 SEPT14Q6ZU15 432 aa12.03□□□□□ -0.48
HDAC6-228ENST00000486227 DEFB132Q7Z7B7 95 aa12.03□□□□□ -0.48
HDAC6-228ENST00000486227 SYCE1Q8N0S2 351 aa12.03□□□□□ -0.48
HDAC6-228ENST00000486227 PIGOQ8TEQ8 1089 aa12.03□□□□□ -0.48
HDAC6-228ENST00000486227 THAP9Q9H5L6 903 aa12.03□□□□□ -0.48
HDAC6-228ENST00000486227 TADA3O75528 432 aa12.03□□□□□ -0.48
HDAC6-228ENST00000486227 PRPF6O94906 941 aaKnown RBP12.03□□□□□ -0.48
HDAC6-228ENST00000486227 PRCPP42785 496 aa12.03□□□□□ -0.48
HDAC6-228ENST00000486227 CCZ1BP86790 482 aa12.03□□□□□ -0.48
HDAC6-228ENST00000486227 CCZ1P86791 482 aaPredicted RBP12.03□□□□□ -0.48
HDAC6-228ENST00000486227 RETREG2Q8NC44 543 aa12.03□□□□□ -0.48
HDAC6-228ENST00000486227 CEP170P1Q96L14 293 aa12.03□□□□□ -0.48
HDAC6-228ENST00000486227 PHF20Q9BVI0 1012 aa12.03□□□□□ -0.48
HDAC6-228ENST00000486227 ZCCHC17Q9NP64 241 aaKnown RBP12.03□□□□□ -0.48
HDAC6-228ENST00000486227 ST7Q9NRC1 585 aa12.03□□□□□ -0.48
HDAC6-228ENST00000486227 BCL9O00512 1426 aa12.03□□□□□ -0.48
HDAC6-228ENST00000486227 EIF3CLB5ME19 914 aaKnown RBP12.02□□□□□ -0.48
HDAC6-228ENST00000486227 ENC1O14682 589 aa12.02□□□□□ -0.48
HDAC6-228ENST00000486227 RASSF7Q02833 373 aa12.02□□□□□ -0.48
HDAC6-228ENST00000486227 PSMD2Q13200 908 aa12.02□□□□□ -0.48
HDAC6-228ENST00000486227 STRIP1Q5VSL9 837 aa12.02□□□□□ -0.48
HDAC6-228ENST00000486227 EIF3CQ99613 913 aaKnown RBP12.02□□□□□ -0.48
HDAC6-228ENST00000486227 PAIP2Q9BPZ3 127 aaKnown RBP12.02□□□□□ -0.48
HDAC6-228ENST00000486227 PCIF1Q9H4Z3 704 aa12.02□□□□□ -0.48
HDAC6-228ENST00000486227 ABCB6Q9NP58 842 aa12.02□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 102.8 ms