RNA–Protein interactions for RNA: ENST00000480525.5

HDAC6-223, Transcript of histone deacetylase 6, human

TSL 3

Gene HDAC6, Length 412 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-223	ENST00000480525	VPS54	Q9P1Q0	977 aa		5.78	□□□□□ -1.48
HDAC6-223	ENST00000480525	NAP1L2	Q9ULW6	460 aa	Predicted RBP	5.78	□□□□□ -1.48
HDAC6-223	ENST00000480525	ARID2	Q68CP9	1835 aa		5.78	□□□□□ -1.48
HDAC6-223	ENST00000480525	COL1A2	P08123	1366 aa		5.78	□□□□□ -1.48
HDAC6-223	ENST00000480525		A0A1W2PQ45	241 aa	Predicted RBP	5.77	□□□□□ -1.49
HDAC6-223	ENST00000480525		A0A1W2PQY0	241 aa		5.77	□□□□□ -1.49
HDAC6-223	ENST00000480525	CCDC85C	A6NKD9	419 aa		5.77	□□□□□ -1.49
HDAC6-223	ENST00000480525	FAM86B1	E9PN63	330 aa		5.77	□□□□□ -1.49
HDAC6-223	ENST00000480525	PITPNM1	O00562	1244 aa		5.77	□□□□□ -1.49
HDAC6-223	ENST00000480525	DHX15	O43143	795 aa	Known RBP	5.77	□□□□□ -1.49
HDAC6-223	ENST00000480525	EDIL3	O43854	480 aa		5.77	□□□□□ -1.49
HDAC6-223	ENST00000480525	PSMD10	O75832	226 aa		5.77	□□□□□ -1.49
HDAC6-223	ENST00000480525	LYPLA2	O95372	231 aa		5.77	□□□□□ -1.49
HDAC6-223	ENST00000480525	ARIH2	O95376	493 aa		5.77	□□□□□ -1.49
HDAC6-223	ENST00000480525	CD2BP2	O95400	341 aa	Known RBP	5.77	□□□□□ -1.49
HDAC6-223	ENST00000480525	CD4	P01730	458 aa		5.77	□□□□□ -1.49
HDAC6-223	ENST00000480525	ASGR1	P07306	291 aa		5.77	□□□□□ -1.49
HDAC6-223	ENST00000480525	FAM86B2	P0C5J1	330 aa		5.77	□□□□□ -1.49
HDAC6-223	ENST00000480525	C6orf222	P0C671	652 aa	Predicted RBP	5.77	□□□□□ -1.49
HDAC6-223	ENST00000480525	CNGA1	P29973	690 aa		5.77	□□□□□ -1.49
HDAC6-223	ENST00000480525	ADAM17	P78536	824 aa		5.77	□□□□□ -1.49
HDAC6-223	ENST00000480525	MLLT1	Q03111	559 aa	Predicted RBP	5.77	□□□□□ -1.49
HDAC6-223	ENST00000480525	STK3	Q13188	491 aa		5.77	□□□□□ -1.49
HDAC6-223	ENST00000480525	PPP2R5C	Q13362	524 aa		5.77	□□□□□ -1.49
HDAC6-223	ENST00000480525	KCNA10	Q16322	511 aa		5.77	□□□□□ -1.49
HDAC6-223	ENST00000480525	GNAS	Q5JWF2	1037 aa		5.77	□□□□□ -1.49
HDAC6-223	ENST00000480525	ARL6IP4	Q66PJ3	421 aa	Known RBP	5.77	□□□□□ -1.49
HDAC6-223	ENST00000480525	SLC39A5	Q6ZMH5	540 aa		5.77	□□□□□ -1.49
HDAC6-223	ENST00000480525	CCDC83	Q8IWF9	413 aa		5.77	□□□□□ -1.49
HDAC6-223	ENST00000480525	DHX37	Q8IY37	1157 aa	Known RBP	5.77	□□□□□ -1.49
HDAC6-223	ENST00000480525	EXOC8	Q8IYI6	725 aa		5.77	□□□□□ -1.49
HDAC6-223	ENST00000480525	NECAB1	Q8N987	351 aa		5.77	□□□□□ -1.49
HDAC6-223	ENST00000480525	OR6J1	Q8NGC5	347 aa		5.77	□□□□□ -1.49
HDAC6-223	ENST00000480525	ETNPPL	Q8TBG4	499 aa		5.77	□□□□□ -1.49
HDAC6-223	ENST00000480525	TBCK	Q8TEA7	893 aa		5.77	□□□□□ -1.49
HDAC6-223	ENST00000480525	SEPT1	Q8WYJ6	367 aa		5.77	□□□□□ -1.49
HDAC6-223	ENST00000480525	FAM167A	Q96KS9	214 aa		5.77	□□□□□ -1.49
HDAC6-223	ENST00000480525	GPR20	Q99678	358 aa		5.77	□□□□□ -1.49
HDAC6-223	ENST00000480525	SDF4	Q9BRK5	362 aa		5.77	□□□□□ -1.49
HDAC6-223	ENST00000480525	C16orf70	Q9BSU1	422 aa		5.77	□□□□□ -1.49
HDAC6-223	ENST00000480525	ZSCAN16	Q9H4T2	348 aa	Predicted RBP	5.77	□□□□□ -1.49
HDAC6-223	ENST00000480525	AGO4	Q9HCK5	861 aa	Known RBP	5.77	□□□□□ -1.49
HDAC6-223	ENST00000480525	JPH1	Q9HDC5	661 aa	Predicted RBP	5.77	□□□□□ -1.49
HDAC6-223	ENST00000480525	STARD7	Q9NQZ5	370 aa		5.77	□□□□□ -1.49
HDAC6-223	ENST00000480525	PDGFC	Q9NRA1	345 aa		5.77	□□□□□ -1.49
HDAC6-223	ENST00000480525	SLC9A2	Q9UBY0	812 aa		5.77	□□□□□ -1.49
HDAC6-223	ENST00000480525	ZNF215	Q9UL58	517 aa	Predicted RBP	5.77	□□□□□ -1.49
HDAC6-223	ENST00000480525	MAFB	Q9Y5Q3	323 aa	Predicted RBP	5.77	□□□□□ -1.49
HDAC6-223	ENST00000480525	NR2E3	Q9Y5X4	410 aa		5.77	□□□□□ -1.49
HDAC6-223	ENST00000480525	EVPL	Q92817	2033 aa		5.77	□□□□□ -1.49
HDAC6-223	ENST00000480525	NRCAM	Q92823	1304 aa		5.76	□□□□□ -1.49
HDAC6-223	ENST00000480525	IGSF9B	Q9UPX0	1349 aa		5.76	□□□□□ -1.49
HDAC6-223	ENST00000480525	TCHH	Q07283	1943 aa		5.76	□□□□□ -1.49
HDAC6-223	ENST00000480525	COL4A6	Q14031	1691 aa		5.76	□□□□□ -1.49
HDAC6-223	ENST00000480525	C11orf97	A0A1B0GVM6	126 aa	Predicted RBP	5.76	□□□□□ -1.49
HDAC6-223	ENST00000480525	hCG_1642624	A0A1W2PR95	340 aa		5.76	□□□□□ -1.49
HDAC6-223	ENST00000480525	MBLAC1	A4D2B0	266 aa	Predicted RBP	5.76	□□□□□ -1.49
HDAC6-223	ENST00000480525	WDR64	B1ANS9	1081 aa		5.76	□□□□□ -1.49
HDAC6-223	ENST00000480525		H3BRB1	525 aa		5.76	□□□□□ -1.49
HDAC6-223	ENST00000480525	ARVCF	O00192	962 aa		5.76	□□□□□ -1.49
HDAC6-223	ENST00000480525	KIAA0355	O15063	1070 aa		5.76	□□□□□ -1.49
HDAC6-223	ENST00000480525	TLR3	O15455	904 aa	Known RBP	5.76	□□□□□ -1.49
HDAC6-223	ENST00000480525	GAS2	O43903	313 aa	Known RBP	5.76	□□□□□ -1.49
HDAC6-223	ENST00000480525	JAK2	O60674	1132 aa		5.76	□□□□□ -1.49
HDAC6-223	ENST00000480525	GGPS1	O95749	300 aa		5.76	□□□□□ -1.49
HDAC6-223	ENST00000480525	PFKM	P08237	780 aa		5.76	□□□□□ -1.49
HDAC6-223	ENST00000480525	GNAT1	P11488	350 aa		5.76	□□□□□ -1.49
HDAC6-223	ENST00000480525	MYCL	P12524	364 aa	Predicted RBP	5.76	□□□□□ -1.49
HDAC6-223	ENST00000480525	XRCC6	P12956	609 aa	Known RBP eCLIP	5.76	□□□□□ -1.49
HDAC6-223	ENST00000480525	EN2	P19622	333 aa	Predicted RBP	5.76	□□□□□ -1.49
HDAC6-223	ENST00000480525	GJB2	P29033	226 aa		5.76	□□□□□ -1.49
HDAC6-223	ENST00000480525	BMP8B	P34820	402 aa		5.76	□□□□□ -1.49
HDAC6-223	ENST00000480525	RFC2	P35250	354 aa		5.76	□□□□□ -1.49
HDAC6-223	ENST00000480525	SLC4A3	P48751	1232 aa		5.76	□□□□□ -1.49
HDAC6-223	ENST00000480525	CDC42EP1	Q00587	391 aa		5.76	□□□□□ -1.49
HDAC6-223	ENST00000480525	SP2	Q02086	613 aa		5.76	□□□□□ -1.49
HDAC6-223	ENST00000480525	PDIA5	Q14554	519 aa		5.76	□□□□□ -1.49
HDAC6-223	ENST00000480525	UBE2S	Q16763	222 aa		5.76	□□□□□ -1.49
HDAC6-223	ENST00000480525	HSDL1	Q3SXM5	330 aa		5.76	□□□□□ -1.49
HDAC6-223	ENST00000480525	PRAMEF19	Q5SWL8	479 aa		5.76	□□□□□ -1.49
HDAC6-223	ENST00000480525	TAF2	Q6P1X5	1199 aa		5.76	□□□□□ -1.49
HDAC6-223	ENST00000480525	ABHD15	Q6UXT9	468 aa		5.76	□□□□□ -1.49
HDAC6-223	ENST00000480525	SEPT14	Q6ZU15	432 aa		5.76	□□□□□ -1.49
HDAC6-223	ENST00000480525	PLA2G4D	Q86XP0	818 aa		5.76	□□□□□ -1.49
HDAC6-223	ENST00000480525	RAB11FIP4	Q86YS3	637 aa		5.76	□□□□□ -1.49
HDAC6-223	ENST00000480525	HSCB	Q8IWL3	235 aa		5.76	□□□□□ -1.49
HDAC6-223	ENST00000480525	FAM126B	Q8IXS8	530 aa		5.76	□□□□□ -1.49
HDAC6-223	ENST00000480525	CAGE1	Q8TC20	777 aa		5.76	□□□□□ -1.49
HDAC6-223	ENST00000480525	PAWR	Q96IZ0	340 aa	Known RBP	5.76	□□□□□ -1.49
HDAC6-223	ENST00000480525	SPATA33	Q96N06	139 aa		5.76	□□□□□ -1.49
HDAC6-223	ENST00000480525	AIFM3	Q96NN9	605 aa		5.76	□□□□□ -1.49
HDAC6-223	ENST00000480525	MTMR9	Q96QG7	549 aa		5.76	□□□□□ -1.49
HDAC6-223	ENST00000480525	PURB	Q96QR8	312 aa	Known RBP	5.76	□□□□□ -1.49
HDAC6-223	ENST00000480525	SMARCAD1	Q9H4L7	1026 aa		5.76	□□□□□ -1.49
HDAC6-223	ENST00000480525	TUT1	Q9H6E5	874 aa	Known RBP	5.76	□□□□□ -1.49
HDAC6-223	ENST00000480525	MLXIP	Q9HAP2	919 aa		5.76	□□□□□ -1.49
HDAC6-223	ENST00000480525	ERAP1	Q9NZ08	941 aa		5.76	□□□□□ -1.49
HDAC6-223	ENST00000480525	GTF2IRD1	Q9UHL9	959 aa		5.76	□□□□□ -1.49
HDAC6-223	ENST00000480525	TCEAL9	Q9UHQ7	104 aa		5.76	□□□□□ -1.49
HDAC6-223	ENST00000480525	NOL7	Q9UMY1	257 aa	Known RBP	5.76	□□□□□ -1.49

Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms