RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 CEP85LQ5SZL2 805 aa20.31■□□□□ 0.84
USP48-204ENST00000400301 C7orf25Q9BPX7 421 aa20.31■□□□□ 0.84
USP48-204ENST00000400301 FAM205AQ6ZU69 1335 aa20.31■□□□□ 0.84
USP48-204ENST00000400301 NT5DC1Q5TFE4 455 aa20.31■□□□□ 0.84
USP48-204ENST00000400301 ADAT2Q7Z6V5 191 aaKnown RBP20.31■□□□□ 0.84
USP48-204ENST00000400301 FLAD1Q8NFF5 587 aa20.31■□□□□ 0.84
USP48-204ENST00000400301 FNBP1Q96RU3 617 aa20.31■□□□□ 0.84
USP48-204ENST00000400301 TEKT3Q9BXF9 490 aa20.31■□□□□ 0.84
USP48-204ENST00000400301 EXOC7Q9UPT5 735 aa20.31■□□□□ 0.84
USP48-204ENST00000400301 A6NNZ2 444 aa20.31■□□□□ 0.84
USP48-204ENST00000400301 MNAT1P51948 309 aa20.31■□□□□ 0.84
USP48-204ENST00000400301 TUBB8Q3ZCM7 444 aa20.31■□□□□ 0.84
USP48-204ENST00000400301 CNKSR1Q969H4 720 aa20.31■□□□□ 0.84
USP48-204ENST00000400301 MMP10P09238 476 aa20.3■□□□□ 0.84
USP48-204ENST00000400301 PPP4CP60510 307 aa20.3■□□□□ 0.84
USP48-204ENST00000400301 GFPT1Q06210 699 aaPredicted RBP20.3■□□□□ 0.84
USP48-204ENST00000400301 CDKAL1Q5VV42 579 aa20.3■□□□□ 0.84
USP48-204ENST00000400301 KIFAP3Q92845 792 aa20.3■□□□□ 0.84
USP48-204ENST00000400301 PDS5AQ29RF7 1337 aaKnown RBP20.3■□□□□ 0.84
USP48-204ENST00000400301 GH2P01242 217 aa20.3■□□□□ 0.84
USP48-204ENST00000400301 EPHB4P54760 987 aa20.3■□□□□ 0.84
USP48-204ENST00000400301 GRIPAP1Q4V328 841 aa20.3■□□□□ 0.84
USP48-204ENST00000400301 NAA35Q5VZE5 725 aa20.3■□□□□ 0.84
USP48-204ENST00000400301 KCTD16Q68DU8 428 aa20.3■□□□□ 0.84
USP48-204ENST00000400301 PPP1R18Q6NYC8 613 aa20.3■□□□□ 0.84
USP48-204ENST00000400301 PDXDC2PQ6P474 469 aa20.3■□□□□ 0.84
USP48-204ENST00000400301 MYMKA6NI61 221 aa20.3■□□□□ 0.84
USP48-204ENST00000400301 GOLGA8KD6RF30 607 aa20.3■□□□□ 0.84
USP48-204ENST00000400301 ARHGAP4P98171 946 aa20.3■□□□□ 0.84
USP48-204ENST00000400301 TTC31Q49AM3 519 aaPredicted RBP20.3■□□□□ 0.84
USP48-204ENST00000400301 FAM83BQ5T0W9 1011 aa20.3■□□□□ 0.84
USP48-204ENST00000400301 CCDC121Q6ZUS5 278 aa20.3■□□□□ 0.84
USP48-204ENST00000400301 FAM212AQ96EL1 285 aa20.3■□□□□ 0.84
USP48-204ENST00000400301 SFI1A8K8P3 1242 aa20.29■□□□□ 0.84
USP48-204ENST00000400301 PDHBP11177 359 aa20.29■□□□□ 0.84
USP48-204ENST00000400301 PSMC2P35998 433 aaKnown RBP20.29■□□□□ 0.84
USP48-204ENST00000400301 MDM2Q00987 491 aaPredicted RBP20.29■□□□□ 0.84
USP48-204ENST00000400301 KRT71Q3SY84 523 aa20.29■□□□□ 0.84
USP48-204ENST00000400301 TMEM179Q6ZVK1 233 aa20.29■□□□□ 0.84
USP48-204ENST00000400301 GCNT4Q9P109 453 aa20.29■□□□□ 0.84
USP48-204ENST00000400301 POTEFA5A3E0 1075 aa20.29■□□□□ 0.84
USP48-204ENST00000400301 POTEIP0CG38 1075 aa20.29■□□□□ 0.84
USP48-204ENST00000400301 HARSP12081 509 aaKnown RBP20.29■□□□□ 0.84
USP48-204ENST00000400301 HNRNPH2P55795 449 aaKnown RBP20.29■□□□□ 0.84
USP48-204ENST00000400301 POTEGQ6S5H5 508 aa20.29■□□□□ 0.84
USP48-204ENST00000400301 POTEEQ6S8J3 1075 aa20.29■□□□□ 0.84
USP48-204ENST00000400301 B4GALNT4Q76KP1 1039 aa20.29■□□□□ 0.84
USP48-204ENST00000400301 BCAS4Q8TDM0 211 aa20.29■□□□□ 0.84
USP48-204ENST00000400301 CAPS2Q9BXY5 557 aa20.29■□□□□ 0.84
USP48-204ENST00000400301 DPH5Q9H2P9 285 aa20.29■□□□□ 0.84
USP48-204ENST00000400301 STK32BQ9NY57 414 aa20.29■□□□□ 0.84
USP48-204ENST00000400301 GAP43P17677 238 aa20.29■□□□□ 0.84
USP48-204ENST00000400301 CTNNA1P35221 906 aaKnown RBP20.29■□□□□ 0.84
USP48-204ENST00000400301 STAT3P40763 770 aa20.29■□□□□ 0.84
USP48-204ENST00000400301 ZNF543Q08ER8 600 aa20.29■□□□□ 0.84
USP48-204ENST00000400301 GSTA5Q7RTV2 222 aa20.29■□□□□ 0.84
USP48-204ENST00000400301 LRRN4CLQ8ND94 238 aa20.29■□□□□ 0.84
USP48-204ENST00000400301 PALM3A6NDB9 673 aaPredicted RBP20.29■□□□□ 0.84
USP48-204ENST00000400301 AP3B2Q13367 1082 aa20.29■□□□□ 0.84
USP48-204ENST00000400301 PDIA5Q14554 519 aa20.29■□□□□ 0.84
USP48-204ENST00000400301 VPS72Q15906 364 aa20.29■□□□□ 0.84
USP48-204ENST00000400301 HOOK3Q86VS8 718 aa20.29■□□□□ 0.84
USP48-204ENST00000400301 GSPT2Q8IYD1 628 aaKnown RBP20.29■□□□□ 0.84
USP48-204ENST00000400301 ZNF577Q9BSK1 485 aa20.29■□□□□ 0.84
USP48-204ENST00000400301 CEP72Q9P209 647 aa20.29■□□□□ 0.84
USP48-204ENST00000400301 GPR75-ASB3A0A0A6YYF3 556 aa20.28■□□□□ 0.84
USP48-204ENST00000400301 FERP16591 822 aa20.28■□□□□ 0.84
USP48-204ENST00000400301 ERVK-24P63145 666 aa20.28■□□□□ 0.84
USP48-204ENST00000400301 PPP4R3CPQ6ZMV5 832 aa20.28■□□□□ 0.84
USP48-204ENST00000400301 SFR1Q86XK3 245 aa20.28■□□□□ 0.84
USP48-204ENST00000400301 STMN4Q9H169 189 aaPredicted RBP20.28■□□□□ 0.84
USP48-204ENST00000400301 RNF14Q9UBS8 474 aa20.28■□□□□ 0.84
USP48-204ENST00000400301 MRC1P22897 1456 aa20.28■□□□□ 0.84
USP48-204ENST00000400301 ANKRD62A6NC57 917 aa20.28■□□□□ 0.84
USP48-204ENST00000400301 GFPT2O94808 682 aa20.28■□□□□ 0.84
USP48-204ENST00000400301 H2AFXP16104 143 aaPredicted RBP20.28■□□□□ 0.84
USP48-204ENST00000400301 STAT2P52630 851 aa20.28■□□□□ 0.84
USP48-204ENST00000400301 CTTNQ14247 550 aaKnown RBP20.28■□□□□ 0.84
USP48-204ENST00000400301 WDR44Q5JSH3 913 aa20.28■□□□□ 0.84
USP48-204ENST00000400301 TRIM65Q6PJ69 517 aa20.28■□□□□ 0.84
USP48-204ENST00000400301 CEP63Q96MT8 703 aa20.28■□□□□ 0.84
USP48-204ENST00000400301 USP14P54578 494 aa20.28■□□□□ 0.84
USP48-204ENST00000400301 ALKBH5Q6P6C2 394 aaKnown RBP20.28■□□□□ 0.84
USP48-204ENST00000400301 KRT27Q7Z3Y8 459 aa20.28■□□□□ 0.84
USP48-204ENST00000400301 PIGOQ8TEQ8 1089 aa20.28■□□□□ 0.84
USP48-204ENST00000400301 CCDC114Q96M63 670 aa20.28■□□□□ 0.84
USP48-204ENST00000400301 CCPG1Q9ULG6 757 aa20.28■□□□□ 0.84
USP48-204ENST00000400301 PLCB3Q01970 1234 aa20.27■□□□□ 0.84
USP48-204ENST00000400301 TTC19Q6DKK2 380 aaPredicted RBP20.27■□□□□ 0.84
USP48-204ENST00000400301 DCAF4Q8WV16 495 aa20.27■□□□□ 0.84
USP48-204ENST00000400301 CCDC127Q96BQ5 260 aa20.27■□□□□ 0.84
USP48-204ENST00000400301 TFR2Q9UP52 801 aa20.27■□□□□ 0.84
USP48-204ENST00000400301 DESP17661 470 aa20.27■□□□□ 0.84
USP48-204ENST00000400301 KLK7P49862 253 aa20.27■□□□□ 0.84
USP48-204ENST00000400301 KCNH2Q12809 1159 aa20.27■□□□□ 0.84
USP48-204ENST00000400301 NFRKBQ6P4R8 1299 aa20.27■□□□□ 0.84
USP48-204ENST00000400301 CCDC77Q9BR77 488 aa20.27■□□□□ 0.84
USP48-204ENST00000400301 IFT74Q96LB3 600 aa20.27■□□□□ 0.84
USP48-204ENST00000400301 TESPA1A2RU30 521 aaPredicted RBP20.26■□□□□ 0.83
USP48-204ENST00000400301 F5H6K3 240 aa20.26■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms