RNA–Protein interactions for RNA: ENST00000374730.2

USP48-202, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-202ENST00000374730 BUB1BO60566 1050 aaPredicted RBP6.22□□□□□ -1.41
USP48-202ENST00000374730 HMGB1P09429 215 aaKnown RBP6.22□□□□□ -1.41
USP48-202ENST00000374730 GLI4P10075 376 aa6.22□□□□□ -1.41
USP48-202ENST00000374730 PFKLP17858 780 aa6.22□□□□□ -1.41
USP48-202ENST00000374730 FBLN1P23142 703 aa6.22□□□□□ -1.41
USP48-202ENST00000374730 TACR1P25103 407 aa6.22□□□□□ -1.41
USP48-202ENST00000374730 ZNF200P98182 395 aaPredicted RBP6.22□□□□□ -1.41
USP48-202ENST00000374730 TARBP2Q15633 366 aaKnown RBP6.22□□□□□ -1.41
USP48-202ENST00000374730 CNKSR3Q6P9H4 555 aa6.22□□□□□ -1.41
USP48-202ENST00000374730 NETO2Q8NC67 525 aa6.22□□□□□ -1.41
USP48-202ENST00000374730 PANK1Q8TE04 598 aa6.22□□□□□ -1.41
USP48-202ENST00000374730 COPS5Q92905 334 aa6.22□□□□□ -1.41
USP48-202ENST00000374730 ZNF428Q96B54 188 aa6.22□□□□□ -1.41
USP48-202ENST00000374730 PUS7Q96PZ0 661 aaKnown RBP6.22□□□□□ -1.41
USP48-202ENST00000374730 KRTAP4-7Q9BYR0 210 aa6.22□□□□□ -1.41
USP48-202ENST00000374730 ACTR10Q9NZ32 417 aa6.22□□□□□ -1.41
USP48-202ENST00000374730 RCAN3Q9UKA8 241 aa6.22□□□□□ -1.41
USP48-202ENST00000374730 YEATS2Q9ULM3 1422 aa6.22□□□□□ -1.41
USP48-202ENST00000374730 NPHP3-ACAD11A0A0J9YXS1 232 aa6.21□□□□□ -1.42
USP48-202ENST00000374730 NOP56O00567 594 aaKnown RBP6.21□□□□□ -1.42
USP48-202ENST00000374730 SMAD7O15105 426 aaKnown RBP6.21□□□□□ -1.42
USP48-202ENST00000374730 SSBP05455 408 aaKnown RBP eCLIP6.21□□□□□ -1.42
USP48-202ENST00000374730 GGT6Q6P531 493 aa6.21□□□□□ -1.42
USP48-202ENST00000374730 TRIM59Q8IWR1 403 aa6.21□□□□□ -1.42
USP48-202ENST00000374730 LZTR1Q8N653 840 aa6.21□□□□□ -1.42
USP48-202ENST00000374730 KCNC2Q96PR1 638 aa6.21□□□□□ -1.42
USP48-202ENST00000374730 RNF38Q9H0F5 515 aa6.21□□□□□ -1.42
USP48-202ENST00000374730 PARD6AQ9NPB6 346 aa6.21□□□□□ -1.42
USP48-202ENST00000374730 PRKAG3Q9UGI9 489 aa6.21□□□□□ -1.42
USP48-202ENST00000374730 SETD1AO15047 1707 aaKnown RBP6.21□□□□□ -1.42
USP48-202ENST00000374730 TSPOAP1O95153 1857 aa6.21□□□□□ -1.42
USP48-202ENST00000374730 ZNF521Q96K83 1311 aa6.21□□□□□ -1.42
USP48-202ENST00000374730 KIF13AQ9H1H9 1805 aa6.2□□□□□ -1.42
USP48-202ENST00000374730 ARHGEF40Q8TER5 1519 aa6.2□□□□□ -1.42
USP48-202ENST00000374730 POLR3AO14802 1390 aaPredicted RBP6.2□□□□□ -1.42
USP48-202ENST00000374730 SPATA31D1Q6ZQQ2 1576 aa6.2□□□□□ -1.42
USP48-202ENST00000374730 F8W031 263 aaPredicted RBP6.2□□□□□ -1.42
USP48-202ENST00000374730 TRIM13O60858 407 aa6.2□□□□□ -1.42
USP48-202ENST00000374730 KCNH1O95259 989 aa6.2□□□□□ -1.42
USP48-202ENST00000374730 RAPGEF3O95398 923 aa6.2□□□□□ -1.42
USP48-202ENST00000374730 WDR43Q15061 677 aaKnown RBP eCLIP6.2□□□□□ -1.42
USP48-202ENST00000374730 LILRA6Q6PI73 481 aa6.2□□□□□ -1.42
USP48-202ENST00000374730 NLGN1Q8N2Q7 840 aa6.2□□□□□ -1.42
USP48-202ENST00000374730 MARCH10Q8NA82 808 aaPredicted RBP6.2□□□□□ -1.42
USP48-202ENST00000374730 TSPAN17Q96FV3 270 aa6.2□□□□□ -1.42
USP48-202ENST00000374730 MRGPRX3Q96LB0 322 aa6.2□□□□□ -1.42
USP48-202ENST00000374730 MMP19Q99542 508 aa6.2□□□□□ -1.42
USP48-202ENST00000374730 MTA3Q9BTC8 594 aa6.2□□□□□ -1.42
USP48-202ENST00000374730 SLC52A1Q9NWF4 448 aa6.2□□□□□ -1.42
USP48-202ENST00000374730 DBR1Q9UK59 544 aaKnown RBP6.2□□□□□ -1.42
USP48-202ENST00000374730 NSD2O96028 1365 aa6.19□□□□□ -1.42
USP48-202ENST00000374730 PLEKHH1Q9ULM0 1364 aa6.19□□□□□ -1.42
USP48-202ENST00000374730 NINLQ9Y2I6 1382 aa6.19□□□□□ -1.42
USP48-202ENST00000374730 ADAMTS20P59510 1910 aa6.19□□□□□ -1.42
USP48-202ENST00000374730 NSD3Q9BZ95 1437 aa6.19□□□□□ -1.42
USP48-202ENST00000374730 ZC3H12DA2A288 527 aaKnown RBP6.19□□□□□ -1.42
USP48-202ENST00000374730 NPHS1O60500 1241 aa6.19□□□□□ -1.42
USP48-202ENST00000374730 FGRP09769 529 aa6.19□□□□□ -1.42
USP48-202ENST00000374730 BMP7P18075 431 aa6.19□□□□□ -1.42
USP48-202ENST00000374730 NCKAP1LP55160 1127 aa6.19□□□□□ -1.42
USP48-202ENST00000374730 PRR5P85299 388 aa6.19□□□□□ -1.42
USP48-202ENST00000374730 SCRN1Q12765 414 aa6.19□□□□□ -1.42
USP48-202ENST00000374730 GTF2IRD2BQ6EKJ0 949 aa6.19□□□□□ -1.42
USP48-202ENST00000374730 C6orf15Q6UXA7 325 aaPredicted RBP6.19□□□□□ -1.42
USP48-202ENST00000374730 GTF2IRD2Q86UP8 949 aa6.19□□□□□ -1.42
USP48-202ENST00000374730 CPNE8Q86YQ8 564 aa6.19□□□□□ -1.42
USP48-202ENST00000374730 NGEFQ8N5V2 710 aa6.19□□□□□ -1.42
USP48-202ENST00000374730 PEX11GQ96HA9 241 aa6.19□□□□□ -1.42
USP48-202ENST00000374730 CCDC136Q96JN2 1154 aa6.19□□□□□ -1.42
USP48-202ENST00000374730 TINF2Q9BSI4 451 aa6.19□□□□□ -1.42
USP48-202ENST00000374730 NKX2-4Q9H2Z4 354 aa6.19□□□□□ -1.42
USP48-202ENST00000374730 ZCCHC4Q9H5U6 513 aa6.19□□□□□ -1.42
USP48-202ENST00000374730 CYP26B1Q9NR63 512 aa6.19□□□□□ -1.42
USP48-202ENST00000374730 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP6.19□□□□□ -1.42
USP48-202ENST00000374730 NUDT5Q9UKK9 219 aa6.19□□□□□ -1.42
USP48-202ENST00000374730 RWDD3Q9Y3V2 267 aa6.19□□□□□ -1.42
USP48-202ENST00000374730 HCFC2Q9Y5Z7 792 aa6.19□□□□□ -1.42
USP48-202ENST00000374730 MRVI1Q9Y6F6 885 aa6.19□□□□□ -1.42
USP48-202ENST00000374730 KIF20BQ96Q89 1820 aa6.19□□□□□ -1.42
USP48-202ENST00000374730 PTPRMP28827 1452 aa6.19□□□□□ -1.42
USP48-202ENST00000374730 DLC1Q96QB1 1528 aa6.19□□□□□ -1.42
USP48-202ENST00000374730 IQSEC2Q5JU85 1478 aa6.18□□□□□ -1.42
USP48-202ENST00000374730 C7orf72A4D263 438 aa6.18□□□□□ -1.42
USP48-202ENST00000374730 KRTAP9-7A8MTY7 169 aa6.18□□□□□ -1.42
USP48-202ENST00000374730 HOXA5P20719 270 aa6.18□□□□□ -1.42
USP48-202ENST00000374730 SLC9A5Q14940 896 aa6.18□□□□□ -1.42
USP48-202ENST00000374730 WWC2Q6AWC2 1192 aa6.18□□□□□ -1.42
USP48-202ENST00000374730 FAM178BQ8IXR5 827 aa6.18□□□□□ -1.42
USP48-202ENST00000374730 SP8Q8IXZ3 490 aa6.18□□□□□ -1.42
USP48-202ENST00000374730 LINC01356Q8N9X3 169 aa6.18□□□□□ -1.42
USP48-202ENST00000374730 PWWP2AQ96N64 755 aa6.18□□□□□ -1.42
USP48-202ENST00000374730 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.18□□□□□ -1.422e-7■■□□□ 11.8
USP48-202ENST00000374730 ANP32EQ9BTT0 268 aa6.18□□□□□ -1.42
USP48-202ENST00000374730 CLEC1BQ9P126 229 aa6.18□□□□□ -1.42
USP48-202ENST00000374730 GULP1Q9UBP9 304 aa6.18□□□□□ -1.42
USP48-202ENST00000374730 FBLN5Q9UBX5 448 aa6.18□□□□□ -1.42
USP48-202ENST00000374730 KNDC1Q76NI1 1749 aa6.18□□□□□ -1.42
USP48-202ENST00000374730 ADGRB2O60241 1585 aa6.18□□□□□ -1.42
USP48-202ENST00000374730 ANKRD36BQ8N2N9 1353 aa6.18□□□□□ -1.42
USP48-202ENST00000374730 ALKQ9UM73 1620 aa6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms