RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 PGM5Q15124 567 aa21.96■■□□□ 1.11
CDX1-202ENST00000616154 VSIG10LQ86VR7 867 aa21.96■■□□□ 1.11
CDX1-202ENST00000616154 SKAP1Q86WV1 359 aa21.96■■□□□ 1.11
CDX1-202ENST00000616154 KIF28PB7ZC32 967 aa21.95■■□□□ 1.1
CDX1-202ENST00000616154 IFIT3O14879 490 aaKnown RBP21.95■■□□□ 1.1
CDX1-202ENST00000616154 CXCL10P02778 98 aa21.95■■□□□ 1.1
CDX1-202ENST00000616154 ZNF286BP0CG31 522 aa21.95■■□□□ 1.1
CDX1-202ENST00000616154 HOXA13P31271 388 aaPredicted RBP21.95■■□□□ 1.1
CDX1-202ENST00000616154 KIAA0753Q2KHM9 967 aa21.95■■□□□ 1.1
CDX1-202ENST00000616154 MYSM1Q5VVJ2 828 aa21.95■■□□□ 1.1
CDX1-202ENST00000616154 HOMER1Q86YM7 354 aa21.95■■□□□ 1.1
CDX1-202ENST00000616154 NCOA7Q8NI08 942 aa21.95■■□□□ 1.1
CDX1-202ENST00000616154 PIGSQ96S52 555 aa21.95■■□□□ 1.1
CDX1-202ENST00000616154 ALG1Q9BT22 464 aa21.95■■□□□ 1.1
CDX1-202ENST00000616154 TSPYL2Q9H2G4 693 aaPredicted RBP21.95■■□□□ 1.1
CDX1-202ENST00000616154 ERICH2A1L162 156 aa21.94■■□□□ 1.1
CDX1-202ENST00000616154 TNFRSF10AO00220 468 aa21.94■■□□□ 1.1
CDX1-202ENST00000616154 PPFIA4O75335 1185 aa21.94■■□□□ 1.1
CDX1-202ENST00000616154 CKBP12277 381 aa21.94■■□□□ 1.1
CDX1-202ENST00000616154 KCNJ6P48051 423 aa21.94■■□□□ 1.1
CDX1-202ENST00000616154 TAP1Q03518 808 aa21.94■■□□□ 1.1
CDX1-202ENST00000616154 TROAPQ12815 778 aa21.94■■□□□ 1.1
CDX1-202ENST00000616154 CELF3Q5SZQ8 465 aaKnown RBP21.94■■□□□ 1.1
CDX1-202ENST00000616154 RALYLQ86SE5 291 aaKnown RBP21.94■■□□□ 1.1
CDX1-202ENST00000616154 MB21D2Q8IYB1 491 aaPredicted RBP21.94■■□□□ 1.1
CDX1-202ENST00000616154 IL31RAQ8NI17 732 aa21.94■■□□□ 1.1
CDX1-202ENST00000616154 MTA3Q9BTC8 594 aa21.94■■□□□ 1.1
CDX1-202ENST00000616154 SENP2Q9HC62 589 aa21.94■■□□□ 1.1
CDX1-202ENST00000616154 GCOM1H8Y6P7 765 aaPredicted RBP21.93■■□□□ 1.1
CDX1-202ENST00000616154 CYTH3O43739 400 aa21.93■■□□□ 1.1
CDX1-202ENST00000616154 ARHGEF15O94989 841 aa21.93■■□□□ 1.1
CDX1-202ENST00000616154 GGPS1O95749 300 aa21.93■■□□□ 1.1
CDX1-202ENST00000616154 POLR2MP0CAP2 368 aa21.93■■□□□ 1.1
CDX1-202ENST00000616154 TGFB3P10600 412 aa21.93■■□□□ 1.1
CDX1-202ENST00000616154 CCND2P30279 289 aa21.93■■□□□ 1.1
CDX1-202ENST00000616154 WDR5P61964 334 aaKnown RBP21.93■■□□□ 1.1
CDX1-202ENST00000616154 PTK7Q13308 1070 aa21.93■■□□□ 1.1
CDX1-202ENST00000616154 WTAPQ15007 396 aa21.93■■□□□ 1.1
CDX1-202ENST00000616154 SART3Q15020 963 aaKnown RBP21.93■■□□□ 1.1
CDX1-202ENST00000616154 CNKSR3Q6P9H4 555 aa21.93■■□□□ 1.1
CDX1-202ENST00000616154 BDP1A6H8Y1 2624 aa21.93■■□□□ 1.1
CDX1-202ENST00000616154 COL4A4P53420 1690 aaPredicted RBP21.92■■□□□ 1.1
CDX1-202ENST00000616154 PNMA6FA0A0J9YX94 578 aa21.92■■□□□ 1.1
CDX1-202ENST00000616154 EPOPA6NHQ4 379 aa21.92■■□□□ 1.1
CDX1-202ENST00000616154 RFXAPO00287 272 aa21.92■■□□□ 1.1
CDX1-202ENST00000616154 GTPBP6O43824 516 aaPredicted RBP21.92■■□□□ 1.1
CDX1-202ENST00000616154 NBNO60934 754 aa21.92■■□□□ 1.1
CDX1-202ENST00000616154 UBA1P22314 1058 aaKnown RBP21.92■■□□□ 1.1
CDX1-202ENST00000616154 ANTXR2P58335 489 aa21.92■■□□□ 1.1
CDX1-202ENST00000616154 NECTIN1Q15223 517 aa21.92■■□□□ 1.1
CDX1-202ENST00000616154 TRIM71Q2Q1W2 868 aaKnown RBP21.92■■□□□ 1.1
CDX1-202ENST00000616154 HSDL1Q3SXM5 330 aa21.92■■□□□ 1.1
CDX1-202ENST00000616154 MICALL1Q8N3F8 863 aa21.92■■□□□ 1.1
CDX1-202ENST00000616154 ADAMTS19Q8TE59 1207 aa21.92■■□□□ 1.1
CDX1-202ENST00000616154 SPATA33Q96N06 139 aa21.92■■□□□ 1.1
CDX1-202ENST00000616154 CERS4Q9HA82 394 aa21.92■■□□□ 1.1
CDX1-202ENST00000616154 MTCH2Q9Y6C9 303 aa21.92■■□□□ 1.1
CDX1-202ENST00000616154 TLL1O43897 1013 aa21.91■■□□□ 1.1
CDX1-202ENST00000616154 SP2Q02086 613 aa21.91■■□□□ 1.1
CDX1-202ENST00000616154 TRAF7Q6Q0C0 670 aa21.91■■□□□ 1.1
CDX1-202ENST00000616154 ARNTL2Q8WYA1 636 aa21.91■■□□□ 1.1
CDX1-202ENST00000616154 FRMPD4Q14CM0 1322 aa21.91■■□□□ 1.1
CDX1-202ENST00000616154 XIRP2A4UGR9 3374 aa21.9■■□□□ 1.1
CDX1-202ENST00000616154 CATIPQ7Z7H3 387 aa21.9■■□□□ 1.1
CDX1-202ENST00000616154 FCHSD1Q86WN1 690 aa21.9■■□□□ 1.1
CDX1-202ENST00000616154 IGDCC4Q8TDY8 1250 aa21.9■■□□□ 1.1
CDX1-202ENST00000616154 WNT8BQ93098 351 aa21.9■■□□□ 1.1
CDX1-202ENST00000616154 C16orf70Q9BSU1 422 aa21.9■■□□□ 1.1
CDX1-202ENST00000616154 DOCK5Q9H7D0 1870 aa21.9■■□□□ 1.1
CDX1-202ENST00000616154 TCF20Q9UGU0 1960 aaKnown RBP21.9■■□□□ 1.1
CDX1-202ENST00000616154 ABHD14A-ACY1A0A1B0GW23 586 aa21.89■■□□□ 1.1
CDX1-202ENST00000616154 SLC27A2O14975 620 aa21.89■■□□□ 1.1
CDX1-202ENST00000616154 SORBS3O60504 671 aa21.89■■□□□ 1.1
CDX1-202ENST00000616154 DEFB103AP81534 67 aa21.89■■□□□ 1.1
CDX1-202ENST00000616154 ZNF200P98182 395 aaPredicted RBP21.89■■□□□ 1.1
CDX1-202ENST00000616154 HIC1Q14526 733 aa21.89■■□□□ 1.1
CDX1-202ENST00000616154 TCTN1Q2MV58 587 aa21.89■■□□□ 1.1
CDX1-202ENST00000616154 IL27Q8NEV9 243 aa21.89■■□□□ 1.1
CDX1-202ENST00000616154 GPKOWQ92917 476 aaPredicted RBP eCLIP21.89■■□□□ 1.1
CDX1-202ENST00000616154 MICAL3Q7RTP6 2002 aa21.89■■□□□ 1.09
CDX1-202ENST00000616154 EFCAB14O75071 495 aa21.88■■□□□ 1.09
CDX1-202ENST00000616154 CDC45O75419 566 aa21.88■■□□□ 1.09
CDX1-202ENST00000616154 STAM2O75886 525 aa21.88■■□□□ 1.09
CDX1-202ENST00000616154 MBTPS1Q14703 1052 aa21.88■■□□□ 1.09
CDX1-202ENST00000616154 ZNF618Q5T7W0 954 aa21.88■■□□□ 1.09
CDX1-202ENST00000616154 CREB3L3Q68CJ9 461 aa21.88■■□□□ 1.09
CDX1-202ENST00000616154 ZFP91Q96JP5 570 aaPredicted RBP21.88■■□□□ 1.09
CDX1-202ENST00000616154 UHRF1Q96T88 793 aaPredicted RBP21.88■■□□□ 1.09
CDX1-202ENST00000616154 MAP3K14Q99558 947 aa21.88■■□□□ 1.09
CDX1-202ENST00000616154 MLXIPQ9HAP2 919 aa21.88■■□□□ 1.09
CDX1-202ENST00000616154 LCHNA4D1U4 455 aa21.87■■□□□ 1.09
CDX1-202ENST00000616154 HOXC8P31273 242 aa21.87■■□□□ 1.09
CDX1-202ENST00000616154 ICAM3P32942 547 aa21.87■■□□□ 1.09
CDX1-202ENST00000616154 MRPS9P82933 396 aaKnown RBP21.87■■□□□ 1.09
CDX1-202ENST00000616154 GNPTABQ3T906 1256 aa21.87■■□□□ 1.09
CDX1-202ENST00000616154 TMCO2Q7Z6W1 182 aaPredicted RBP21.87■■□□□ 1.09
CDX1-202ENST00000616154 SERINC5Q86VE9 423 aa21.87■■□□□ 1.09
CDX1-202ENST00000616154 INPP4AQ96PE3 977 aaPredicted RBP21.87■■□□□ 1.09
CDX1-202ENST00000616154 ZBED2Q9BTP6 218 aa21.87■■□□□ 1.09
CDX1-202ENST00000616154 ANO2Q9NQ90 1003 aa21.87■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms