RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 GOLGA6DP0CG33 693 aa6.12□□□□□ -1.43
LIMA1-203ENST00000547825 CASP7P55210 303 aa6.12□□□□□ -1.43
LIMA1-203ENST00000547825 PAK2Q13177 524 aa6.12□□□□□ -1.43
LIMA1-203ENST00000547825 RBM43Q6ZSC3 357 aaKnown RBP6.12□□□□□ -1.43
LIMA1-203ENST00000547825 STOX1Q6ZVD7 989 aa6.12□□□□□ -1.43
LIMA1-203ENST00000547825 HS2ST1Q7LGA3 356 aa6.12□□□□□ -1.43
LIMA1-203ENST00000547825 CMTR1Q8N1G2 835 aaKnown RBP6.12□□□□□ -1.43
LIMA1-203ENST00000547825 PPM1EQ8WY54 764 aa6.12□□□□□ -1.43
LIMA1-203ENST00000547825 MPHOSPH8Q99549 860 aa6.12□□□□□ -1.43
LIMA1-203ENST00000547825 KLF16Q9BXK1 252 aaPredicted RBP6.12□□□□□ -1.43
LIMA1-203ENST00000547825 GOLGA6AQ9NYA3 693 aa6.12□□□□□ -1.43
LIMA1-203ENST00000547825 ADAM21Q9UKJ8 722 aa6.12□□□□□ -1.43
LIMA1-203ENST00000547825 SAMM50Q9Y512 469 aa6.12□□□□□ -1.43
LIMA1-203ENST00000547825 USP17L7P0C7H9 530 aa6.12□□□□□ -1.43
LIMA1-203ENST00000547825 KRT9P35527 623 aa6.12□□□□□ -1.43
LIMA1-203ENST00000547825 MAP2K2P36507 400 aa6.12□□□□□ -1.43
LIMA1-203ENST00000547825 MAP2K1Q02750 393 aaPredicted RBP6.12□□□□□ -1.43
LIMA1-203ENST00000547825 NFIXQ14938 502 aa6.12□□□□□ -1.43
LIMA1-203ENST00000547825 TBC1D9BQ66K14 1250 aa6.12□□□□□ -1.43
LIMA1-203ENST00000547825 SPTY2D1Q68D10 685 aaPredicted RBP6.12□□□□□ -1.43
LIMA1-203ENST00000547825 GPR161Q8N6U8 529 aaKnown RBP6.12□□□□□ -1.43
LIMA1-203ENST00000547825 FBF1Q8TES7 1133 aa6.12□□□□□ -1.43
LIMA1-203ENST00000547825 C12orf49Q9H741 205 aa6.12□□□□□ -1.43
LIMA1-203ENST00000547825 MMRN2Q9H8L6 949 aa6.12□□□□□ -1.43
LIMA1-203ENST00000547825 PGPEP1Q9NXJ5 209 aa6.12□□□□□ -1.43
LIMA1-203ENST00000547825 SRP68Q9UHB9 627 aaKnown RBP6.12□□□□□ -1.43
LIMA1-203ENST00000547825 DMGDHQ9UI17 866 aaKnown RBP6.12□□□□□ -1.43
LIMA1-203ENST00000547825 JRKLQ9Y4A0 524 aa6.12□□□□□ -1.43
LIMA1-203ENST00000547825 MED23Q9ULK4 1368 aa6.11□□□□□ -1.43
LIMA1-203ENST00000547825 NTSR2O95665 410 aa6.11□□□□□ -1.43
LIMA1-203ENST00000547825 NLRP5P59047 1200 aa6.11□□□□□ -1.43
LIMA1-203ENST00000547825 TRIM28Q13263 835 aaKnown RBP6.11□□□□□ -1.43
LIMA1-203ENST00000547825 PTPROQ16827 1216 aa6.11□□□□□ -1.43
LIMA1-203ENST00000547825 C4orf17Q53FE4 359 aa6.11□□□□□ -1.43
LIMA1-203ENST00000547825 KCTD16Q68DU8 428 aa6.11□□□□□ -1.43
LIMA1-203ENST00000547825 TMEM214Q6NUQ4 689 aaKnown RBP6.11□□□□□ -1.43
LIMA1-203ENST00000547825 KSR2Q6VAB6 950 aa6.11□□□□□ -1.43
LIMA1-203ENST00000547825 TRMT1LQ7Z2T5 733 aaKnown RBP6.11□□□□□ -1.43
LIMA1-203ENST00000547825 CCDC91Q7Z6B0 441 aa6.11□□□□□ -1.43
LIMA1-203ENST00000547825 JAZF1Q86VZ6 243 aa6.11□□□□□ -1.43
LIMA1-203ENST00000547825 BCAS4Q8TDM0 211 aa6.11□□□□□ -1.43
LIMA1-203ENST00000547825 NIFKQ9BYG3 293 aaKnown RBP6.11□□□□□ -1.43
LIMA1-203ENST00000547825 POLD4Q9HCU8 107 aa6.11□□□□□ -1.43
LIMA1-203ENST00000547825 CABP5Q9NP86 173 aa6.11□□□□□ -1.43
LIMA1-203ENST00000547825 PAG1Q9NWQ8 432 aa6.11□□□□□ -1.43
LIMA1-203ENST00000547825 FAM53CQ9NYF3 392 aa6.11□□□□□ -1.43
LIMA1-203ENST00000547825 CEP131Q9UPN4 1083 aa6.11□□□□□ -1.43
LIMA1-203ENST00000547825 UTYO14607 1347 aa6.11□□□□□ -1.43
LIMA1-203ENST00000547825 MAP3K15Q6ZN16 1313 aa6.11□□□□□ -1.43
LIMA1-203ENST00000547825 EFCAB8A8MWE9 144 aa6.11□□□□□ -1.43
LIMA1-203ENST00000547825 SLFN14P0C7P3 912 aa6.11□□□□□ -1.43
LIMA1-203ENST00000547825 PFKFB1P16118 471 aa6.11□□□□□ -1.43
LIMA1-203ENST00000547825 MCM3P25205 808 aa6.11□□□□□ -1.43
LIMA1-203ENST00000547825 PDE6BP35913 854 aa6.11□□□□□ -1.43
LIMA1-203ENST00000547825 IQCB1Q15051 598 aa6.11□□□□□ -1.43
LIMA1-203ENST00000547825 SLC9C2Q5TAH2 1124 aa6.11□□□□□ -1.43
LIMA1-203ENST00000547825 LDHAL6AQ6ZMR3 332 aa6.11□□□□□ -1.43
LIMA1-203ENST00000547825 MICALCLQ6ZW33 695 aa6.11□□□□□ -1.43
LIMA1-203ENST00000547825 ISCA1Q9BUE6 129 aa6.11□□□□□ -1.43
LIMA1-203ENST00000547825 IRX2Q9BZI1 471 aaPredicted RBP6.11□□□□□ -1.43
LIMA1-203ENST00000547825 FAM204AQ9H8W3 233 aa6.11□□□□□ -1.43
LIMA1-203ENST00000547825 TAB2Q9NYJ8 693 aa6.11□□□□□ -1.43
LIMA1-203ENST00000547825 KCNJ14Q9UNX9 436 aa6.11□□□□□ -1.43
LIMA1-203ENST00000547825 RTCBQ9Y3I0 505 aaKnown RBP6.11□□□□□ -1.43
LIMA1-203ENST00000547825 CAPN7Q9Y6W3 813 aa6.11□□□□□ -1.43
LIMA1-203ENST00000547825 SIPA1L1O43166 1804 aa6.11□□□□□ -1.43
LIMA1-203ENST00000547825 PHIPQ8WWQ0 1821 aa6.11□□□□□ -1.43
LIMA1-203ENST00000547825 LOC102724159A0A0B4J2E5 919 aa6.11□□□□□ -1.43
LIMA1-203ENST00000547825 ZIC2O95409 532 aaPredicted RBP6.11□□□□□ -1.43
LIMA1-203ENST00000547825 A1BGP04217 495 aa6.11□□□□□ -1.43
LIMA1-203ENST00000547825 UBA7P41226 1012 aa6.11□□□□□ -1.43
LIMA1-203ENST00000547825 PTGIRP43119 386 aa6.11□□□□□ -1.43
LIMA1-203ENST00000547825 NLRP12P59046 1061 aa6.11□□□□□ -1.43
LIMA1-203ENST00000547825 SCRN1Q12765 414 aa6.11□□□□□ -1.43
LIMA1-203ENST00000547825 KIF5AQ12840 1032 aa6.11□□□□□ -1.43
LIMA1-203ENST00000547825 PWP2Q15269 919 aaKnown RBP6.11□□□□□ -1.43
LIMA1-203ENST00000547825 HLFQ16534 295 aa6.11□□□□□ -1.43
LIMA1-203ENST00000547825 TRAPPC3LQ5T215 181 aa6.11□□□□□ -1.43
LIMA1-203ENST00000547825 KSR1Q8IVT5 923 aa6.11□□□□□ -1.43
LIMA1-203ENST00000547825 WASF1Q92558 559 aa6.11□□□□□ -1.43
LIMA1-203ENST00000547825 NAPGQ99747 312 aaPredicted RBP6.11□□□□□ -1.43
LIMA1-203ENST00000547825 VAT1LQ9HCJ6 419 aa6.11□□□□□ -1.43
LIMA1-203ENST00000547825 NEUROD4Q9HD90 331 aa6.11□□□□□ -1.43
LIMA1-203ENST00000547825 KBTBD4Q9NVX7 518 aa6.11□□□□□ -1.43
LIMA1-203ENST00000547825 IMPACTQ9P2X3 320 aa6.11□□□□□ -1.43
LIMA1-203ENST00000547825 MORC2Q9Y6X9 1032 aaPredicted RBP6.11□□□□□ -1.43
LIMA1-203ENST00000547825 MYH7P12883 1935 aa6.11□□□□□ -1.43
LIMA1-203ENST00000547825 B4E1Z4 1266 aa6.1□□□□□ -1.43
LIMA1-203ENST00000547825 FBXO24O75426 580 aa6.1□□□□□ -1.43
LIMA1-203ENST00000547825 ACTN2P35609 894 aa6.1□□□□□ -1.43
LIMA1-203ENST00000547825 IDH3AP50213 366 aa6.1□□□□□ -1.43
LIMA1-203ENST00000547825 Q6ZVU0 165 aa6.1□□□□□ -1.43
LIMA1-203ENST00000547825 ZNF654Q8IZM8 581 aa6.1□□□□□ -1.43
LIMA1-203ENST00000547825 SUCLG2Q96I99 432 aa6.1□□□□□ -1.43
LIMA1-203ENST00000547825 CCDC42Q96M95 316 aa6.1□□□□□ -1.43
LIMA1-203ENST00000547825 HSD3B7Q9H2F3 369 aa6.1□□□□□ -1.43
LIMA1-203ENST00000547825 TFCP2L1Q9NZI6 479 aa6.1□□□□□ -1.43
LIMA1-203ENST00000547825 LUC7L2Q9Y383 392 aaKnown RBP6.1□□□□□ -1.43
LIMA1-203ENST00000547825 PCDHA5Q9Y5H7 936 aa6.1□□□□□ -1.43
LIMA1-203ENST00000547825 AOX1Q06278 1338 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms