RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 CD109Q6YHK3 1445 aa14.97□□□□□ -0.01
CSPG4-201ENST00000308508 ADCY9O60503 1353 aa14.97□□□□□ -0.01
CSPG4-201ENST00000308508 KRT8P05787 483 aa14.97□□□□□ -0.01
CSPG4-201ENST00000308508 MYL1P05976 194 aa14.97□□□□□ -0.01
CSPG4-201ENST00000308508 WDR75Q8IWA0 830 aaKnown RBP14.97□□□□□ -0.01
CSPG4-201ENST00000308508 DACH2Q96NX9 599 aa14.97□□□□□ -0.01
CSPG4-201ENST00000308508 TRPV6Q9H1D0 765 aa14.97□□□□□ -0.01
CSPG4-201ENST00000308508 ATP5JP18859 108 aa14.97□□□□□ -0.01
CSPG4-201ENST00000308508 PTGDRQ13258 359 aa14.97□□□□□ -0.01
CSPG4-201ENST00000308508 KIF19Q2TAC6 998 aa14.97□□□□□ -0.01
CSPG4-201ENST00000308508 WDR91A4D1P6 747 aa14.97□□□□□ -0.01
CSPG4-201ENST00000308508 RASSF10A6NK89 507 aa14.97□□□□□ -0.01
CSPG4-201ENST00000308508 PSMC2P35998 433 aaKnown RBP14.97□□□□□ -0.01
CSPG4-201ENST00000308508 SKOR1P84550 965 aa14.97□□□□□ -0.01
CSPG4-201ENST00000308508 ZYXQ15942 572 aaKnown RBP14.97□□□□□ -0.01
CSPG4-201ENST00000308508 C1orf146Q5VVC0 180 aa14.97□□□□□ -0.01
CSPG4-201ENST00000308508 DARS2Q6PI48 645 aaKnown RBP14.97□□□□□ -0.01
CSPG4-201ENST00000308508 KCTD6Q8NC69 237 aa14.97□□□□□ -0.01
CSPG4-201ENST00000308508 RNF169Q8NCN4 708 aa14.97□□□□□ -0.01
CSPG4-201ENST00000308508 CACTINQ8WUQ7 758 aaKnown RBP14.97□□□□□ -0.01
CSPG4-201ENST00000308508 ABCC12Q96J65 1359 aa14.96□□□□□ -0.01
CSPG4-201ENST00000308508 KIF22Q14807 665 aa14.96□□□□□ -0.01
CSPG4-201ENST00000308508 MAN2A1Q16706 1144 aa14.96□□□□□ -0.01
CSPG4-201ENST00000308508 XKR9Q5GH70 373 aa14.96□□□□□ -0.01
CSPG4-201ENST00000308508 ZBTB41Q5SVQ8 909 aa14.96□□□□□ -0.01
CSPG4-201ENST00000308508 ANO5Q75V66 913 aa14.96□□□□□ -0.01
CSPG4-201ENST00000308508 SUN2Q9UH99 717 aa14.96□□□□□ -0.01
CSPG4-201ENST00000308508 DBNLQ9UJU6 430 aaKnown RBP14.96□□□□□ -0.01
CSPG4-201ENST00000308508 PODXLO00592 558 aa14.96□□□□□ -0.01
CSPG4-201ENST00000308508 ABL1P00519 1130 aa14.96□□□□□ -0.01
CSPG4-201ENST00000308508 DHX38Q92620 1227 aaKnown RBP14.96□□□□□ -0.01
CSPG4-201ENST00000308508 AK8Q96MA6 479 aa14.96□□□□□ -0.01
CSPG4-201ENST00000308508 APOBEC2Q9Y235 224 aaKnown RBP14.96□□□□□ -0.01
CSPG4-201ENST00000308508 SH3TC1Q8TE82 1336 aa14.96□□□□□ -0.01
CSPG4-201ENST00000308508 TOPBP1Q92547 1522 aa14.96□□□□□ -0.01
CSPG4-201ENST00000308508 E2F6O75461 281 aa14.96□□□□□ -0.01
CSPG4-201ENST00000308508 SCG2P13521 617 aa14.96□□□□□ -0.01
CSPG4-201ENST00000308508 PDE6AP16499 860 aa14.96□□□□□ -0.01
CSPG4-201ENST00000308508 MRPS15P82914 257 aaKnown RBP14.96□□□□□ -0.01
CSPG4-201ENST00000308508 DDB1Q16531 1140 aa14.96□□□□□ -0.01
CSPG4-201ENST00000308508 CCDC127Q96BQ5 260 aa14.96□□□□□ -0.01
CSPG4-201ENST00000308508 NHEJ1Q9H9Q4 299 aaPredicted RBP14.96□□□□□ -0.01
CSPG4-201ENST00000308508 CAPRIN2Q6IMN6 1127 aaKnown RBP14.96□□□□□ -0.01
CSPG4-201ENST00000308508 OR9Q1Q8NGQ5 310 aa14.96□□□□□ -0.01
CSPG4-201ENST00000308508 PYROXD1Q8WU10 500 aa14.96□□□□□ -0.01
CSPG4-201ENST00000308508 CHURC1Q8WUH1 139 aa14.96□□□□□ -0.01
CSPG4-201ENST00000308508 CFAP36Q96G28 342 aa14.96□□□□□ -0.01
CSPG4-201ENST00000308508 PHACTR3Q96KR7 559 aa14.96□□□□□ -0.01
CSPG4-201ENST00000308508 ELAC2Q9BQ52 826 aaKnown RBP14.96□□□□□ -0.01
CSPG4-201ENST00000308508 STX18Q9P2W9 335 aaKnown RBP14.96□□□□□ -0.01
CSPG4-201ENST00000308508 ZFP69BQ9UJL9 534 aa14.96□□□□□ -0.01
CSPG4-201ENST00000308508 SERPING1P05155 500 aa14.96□□□□□ -0.01
CSPG4-201ENST00000308508 ABCD1P33897 745 aa14.96□□□□□ -0.01
CSPG4-201ENST00000308508 NSMFQ6X4W1 530 aa14.96□□□□□ -0.01
CSPG4-201ENST00000308508 L3MBTL1Q9Y468 752 aa14.96□□□□□ -0.01
CSPG4-201ENST00000308508 KDM5BQ9UGL1 1544 aa14.96□□□□□ -0.02
CSPG4-201ENST00000308508 KRT1P04264 644 aa14.96□□□□□ -0.02
CSPG4-201ENST00000308508 KRT24Q2M2I5 525 aa14.96□□□□□ -0.02
CSPG4-201ENST00000308508 CNBD1Q8NA66 436 aa14.96□□□□□ -0.02
CSPG4-201ENST00000308508 LRRC37BQ96QE4 947 aa14.96□□□□□ -0.02
CSPG4-201ENST00000308508 GIMAP4Q9NUV9 329 aa14.96□□□□□ -0.02
CSPG4-201ENST00000308508 ARHGAP26Q9UNA1 814 aa14.96□□□□□ -0.02
CSPG4-201ENST00000308508 KDM5AP29375 1690 aaKnown RBP14.96□□□□□ -0.02
CSPG4-201ENST00000308508 CFAP73A6NFT4 308 aa14.95□□□□□ -0.02
CSPG4-201ENST00000308508 DDAH1O94760 285 aa14.95□□□□□ -0.02
CSPG4-201ENST00000308508 SPDYE1Q8NFV5 336 aaPredicted RBP14.95□□□□□ -0.02
CSPG4-201ENST00000308508 TESK2Q96S53 571 aa14.95□□□□□ -0.02
CSPG4-201ENST00000308508 ZBTB18Q99592 522 aa14.95□□□□□ -0.02
CSPG4-201ENST00000308508 TEKT3Q9BXF9 490 aa14.95□□□□□ -0.02
CSPG4-201ENST00000308508 STRIP2Q9ULQ0 834 aa14.95□□□□□ -0.02
CSPG4-201ENST00000308508 KIAA0586Q9BVV6 1533 aa14.95□□□□□ -0.02
CSPG4-201ENST00000308508 TAC1P20366 129 aa14.95□□□□□ -0.02
CSPG4-201ENST00000308508 NR2F2P24468 414 aa14.95□□□□□ -0.02
CSPG4-201ENST00000308508 SPOUT1Q5T280 376 aaKnown RBP14.95□□□□□ -0.02
CSPG4-201ENST00000308508 PNMA2Q9UL42 364 aa14.95□□□□□ -0.02
CSPG4-201ENST00000308508 PAIP2BQ9ULR5 123 aaKnown RBP14.95□□□□□ -0.02
CSPG4-201ENST00000308508 DIS3Q9Y2L1 958 aaKnown RBP14.95□□□□□ -0.02
CSPG4-201ENST00000308508 DUOX2Q9NRD8 1548 aa14.95□□□□□ -0.02
CSPG4-201ENST00000308508 MOCS3O95396 460 aa14.95□□□□□ -0.02
CSPG4-201ENST00000308508 A0A1B0GW55 424 aa14.95□□□□□ -0.02
CSPG4-201ENST00000308508 F8W8V4 182 aa14.95□□□□□ -0.02
CSPG4-201ENST00000308508 DUX4L2P0CJ85 424 aa14.95□□□□□ -0.02
CSPG4-201ENST00000308508 DUX4L3P0CJ86 424 aa14.95□□□□□ -0.02
CSPG4-201ENST00000308508 DUX4L4P0CJ87 422 aa14.95□□□□□ -0.02
CSPG4-201ENST00000308508 DUX4L5P0CJ88 424 aa14.95□□□□□ -0.02
CSPG4-201ENST00000308508 DUX4L6P0CJ89 424 aa14.95□□□□□ -0.02
CSPG4-201ENST00000308508 DUX4L7P0CJ90 424 aa14.95□□□□□ -0.02
CSPG4-201ENST00000308508 KRT39Q6A163 491 aa14.95□□□□□ -0.02
CSPG4-201ENST00000308508 FBXO38Q6PIJ6 1188 aa14.95□□□□□ -0.02
CSPG4-201ENST00000308508 TTLL7Q6ZT98 887 aa14.95□□□□□ -0.02
CSPG4-201ENST00000308508 ABCB6Q9NP58 842 aa14.95□□□□□ -0.02
CSPG4-201ENST00000308508 DUX4Q9UBX2 424 aa14.95□□□□□ -0.02
CSPG4-201ENST00000308508 CLIC4Q9Y696 253 aa14.95□□□□□ -0.02
CSPG4-201ENST00000308508 YTHDC2Q9H6S0 1430 aaKnown RBP14.95□□□□□ -0.02
CSPG4-201ENST00000308508 MED7O43513 233 aa14.95□□□□□ -0.02
CSPG4-201ENST00000308508 PLAAQ9Y263 795 aa14.95□□□□□ -0.02
CSPG4-201ENST00000308508 PDIK1LQ8N165 341 aa14.95□□□□□ -0.02
CSPG4-201ENST00000308508 FANCBQ8NB91 859 aa14.95□□□□□ -0.02
CSPG4-201ENST00000308508 KIF17Q9P2E2 1029 aa14.95□□□□□ -0.02
CSPG4-201ENST00000308508 A0A0G2JND7 137 aa14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms