RNA–Protein interactions for RNA: ENST00000264039.6

GPC1-201, Transcript of glypican 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GPC1, Length 3,713 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-201ENST00000264039 SPRED3Q2MJR0 410 aa17.79■□□□□ 0.44
GPC1-201ENST00000264039 SGMS1Q86VZ5 419 aa17.79■□□□□ 0.44
GPC1-201ENST00000264039 ORAI2Q96SN7 254 aa17.79■□□□□ 0.44
GPC1-201ENST00000264039 TAOK3Q9H2K8 898 aa17.79■□□□□ 0.44
GPC1-201ENST00000264039 THRAP3Q9Y2W1 955 aaKnown RBP17.79■□□□□ 0.44
GPC1-201ENST00000264039 SMIM22K7EJ46 135 aa17.79■□□□□ 0.44
GPC1-201ENST00000264039 DRP2Q13474 957 aa17.79■□□□□ 0.44
GPC1-201ENST00000264039 HLFQ16534 295 aa17.79■□□□□ 0.44
GPC1-201ENST00000264039 CDC37Q16543 378 aaPredicted RBP17.79■□□□□ 0.44
GPC1-201ENST00000264039 STAG2Q8N3U4 1231 aa17.79■□□□□ 0.44
GPC1-201ENST00000264039 PACSIN1Q9BY11 444 aa17.79■□□□□ 0.44
GPC1-201ENST00000264039 DBR1Q9UK59 544 aaKnown RBP17.79■□□□□ 0.44
GPC1-201ENST00000264039 ACSL3O95573 720 aa17.78■□□□□ 0.44
GPC1-201ENST00000264039 EVA1CP58658 441 aa17.78■□□□□ 0.44
GPC1-201ENST00000264039 TMEM266Q2M3C6 531 aa17.78■□□□□ 0.44
GPC1-201ENST00000264039 TSNAXIP1Q2TAA8 658 aa17.78■□□□□ 0.44
GPC1-201ENST00000264039 RABL6Q3YEC7 729 aaPredicted RBP17.78■□□□□ 0.44
GPC1-201ENST00000264039 LPIN2Q92539 896 aa17.78■□□□□ 0.44
GPC1-201ENST00000264039 PANK4Q9NVE7 773 aa17.78■□□□□ 0.44
GPC1-201ENST00000264039 RAD23BP54727 409 aa17.78■□□□□ 0.44
GPC1-201ENST00000264039 ZBTB16Q05516 673 aa17.78■□□□□ 0.44
GPC1-201ENST00000264039 BIRC3Q13489 604 aa17.78■□□□□ 0.44
GPC1-201ENST00000264039 UBE3CQ15386 1083 aa17.78■□□□□ 0.44
GPC1-201ENST00000264039 TRPM8Q7Z2W7 1104 aa17.78■□□□□ 0.44
GPC1-201ENST00000264039 CCDC105Q8IYK2 499 aa17.78■□□□□ 0.44
GPC1-201ENST00000264039 HOOK2Q96ED9 719 aa17.78■□□□□ 0.44
GPC1-201ENST00000264039 DHTKD1Q96HY7 919 aaPredicted RBP17.78■□□□□ 0.44
GPC1-201ENST00000264039 ADAM33Q9BZ11 813 aa17.78■□□□□ 0.44
GPC1-201ENST00000264039 GPR108Q9NPR9 543 aa17.78■□□□□ 0.44
GPC1-201ENST00000264039 CCDC169A6NNP5 214 aa17.77■□□□□ 0.44
GPC1-201ENST00000264039 EPHB6O15197 1021 aa17.77■□□□□ 0.44
GPC1-201ENST00000264039 CTCFP49711 727 aaPredicted RBP17.77■□□□□ 0.44
GPC1-201ENST00000264039 TMBIM4Q9HC24 238 aa17.77■□□□□ 0.44
GPC1-201ENST00000264039 MROH1Q8NDA8 1641 aa17.77■□□□□ 0.44
GPC1-201ENST00000264039 CETN3O15182 167 aa17.77■□□□□ 0.44
GPC1-201ENST00000264039 UBOX5O94941 541 aa17.77■□□□□ 0.44
GPC1-201ENST00000264039 TNNI2P48788 182 aa17.77■□□□□ 0.44
GPC1-201ENST00000264039 KCNJ2P63252 427 aa17.77■□□□□ 0.44
GPC1-201ENST00000264039 HERC4Q5GLZ8 1057 aaPredicted RBP17.77■□□□□ 0.44
GPC1-201ENST00000264039 SPICE1Q8N0Z3 855 aa17.77■□□□□ 0.44
GPC1-201ENST00000264039 FGFR1OP2Q9NVK5 253 aa17.77■□□□□ 0.44
GPC1-201ENST00000264039 NKIRAS1Q9NYS0 192 aa17.77■□□□□ 0.44
GPC1-201ENST00000264039 SEC63Q9UGP8 760 aaKnown RBP17.77■□□□□ 0.44
GPC1-201ENST00000264039 H7C1W4 665 aa17.77■□□□□ 0.43
GPC1-201ENST00000264039 ZNF263O14978 683 aa17.77■□□□□ 0.43
GPC1-201ENST00000264039 RASSF9O75901 435 aa17.77■□□□□ 0.43
GPC1-201ENST00000264039 ITGB3BPQ13352 177 aaPredicted RBP17.77■□□□□ 0.43
GPC1-201ENST00000264039 ZRSR2Q15696 482 aaKnown RBP17.77■□□□□ 0.43
GPC1-201ENST00000264039 IQCKQ8N0W5 287 aa17.77■□□□□ 0.43
GPC1-201ENST00000264039 RASAL2Q9UJF2 1139 aa17.77■□□□□ 0.43
GPC1-201ENST00000264039 ATP2A2P16615 1042 aaKnown RBP17.76■□□□□ 0.43
GPC1-201ENST00000264039 LONP1P36776 959 aaKnown RBP17.76■□□□□ 0.43
GPC1-201ENST00000264039 CALCOCO2Q13137 446 aa17.76■□□□□ 0.43
GPC1-201ENST00000264039 MAN2A1Q16706 1144 aa17.76■□□□□ 0.43
GPC1-201ENST00000264039 ARMC9Q7Z3E5 817 aa17.76■□□□□ 0.43
GPC1-201ENST00000264039 ZMYND12Q9H0C1 365 aa17.76■□□□□ 0.43
GPC1-201ENST00000264039 DAAM1Q9Y4D1 1078 aa17.76■□□□□ 0.43
GPC1-201ENST00000264039 MLH3Q9UHC1 1453 aa17.76■□□□□ 0.43
GPC1-201ENST00000264039 OVOS2A0A0J9YW53 1432 aa17.76■□□□□ 0.43
GPC1-201ENST00000264039 OVOS2Q6IE36 1432 aa17.76■□□□□ 0.43
GPC1-201ENST00000264039 GNAT1P11488 350 aa17.76■□□□□ 0.43
GPC1-201ENST00000264039 GJC1P36383 396 aa17.76■□□□□ 0.43
GPC1-201ENST00000264039 BICDL1Q6ZP65 573 aa17.76■□□□□ 0.43
GPC1-201ENST00000264039 C15orf41Q9Y2V0 281 aa17.76■□□□□ 0.43
GPC1-201ENST00000264039 ERVK-9P63128 1117 aa17.76■□□□□ 0.43
GPC1-201ENST00000264039 RFX8Q6ZV50 586 aa17.76■□□□□ 0.43
GPC1-201ENST00000264039 SNX29Q8TEQ0 813 aa17.76■□□□□ 0.43
GPC1-201ENST00000264039 EPB41L4AQ9HCS5 686 aaPredicted RBP17.76■□□□□ 0.43
GPC1-201ENST00000264039 MCM9Q9NXL9 1143 aa17.76■□□□□ 0.43
GPC1-201ENST00000264039 AXIN2Q9Y2T1 843 aa17.76■□□□□ 0.43
GPC1-201ENST00000264039 AGLP35573 1532 aa17.76■□□□□ 0.43
GPC1-201ENST00000264039 TCP11X1B4DZS4 312 aa17.75■□□□□ 0.43
GPC1-201ENST00000264039 DYNLL1P63167 89 aaKnown RBP17.75■□□□□ 0.43
GPC1-201ENST00000264039 KLHDC7AQ5VTJ3 777 aa17.75■□□□□ 0.43
GPC1-201ENST00000264039 KRT79Q5XKE5 535 aa17.75■□□□□ 0.43
GPC1-201ENST00000264039 NEK9Q8TD19 979 aa17.75■□□□□ 0.43
GPC1-201ENST00000264039 HOMER3Q9NSC5 361 aa17.75■□□□□ 0.43
GPC1-201ENST00000264039 TRAPPC3O43617 180 aa17.75■□□□□ 0.43
GPC1-201ENST00000264039 FGFR4P22455 802 aa17.75■□□□□ 0.43
GPC1-201ENST00000264039 ATP2C1P98194 919 aaPredicted RBP17.75■□□□□ 0.43
GPC1-201ENST00000264039 ZNF844Q08AG5 666 aa17.75■□□□□ 0.43
GPC1-201ENST00000264039 PLCB4Q15147 1175 aa17.75■□□□□ 0.43
GPC1-201ENST00000264039 FAM83BQ5T0W9 1011 aa17.75■□□□□ 0.43
GPC1-201ENST00000264039 ZNF444Q8N0Y2 327 aaPredicted RBP17.75■□□□□ 0.43
GPC1-201ENST00000264039 CAVIN3Q969G5 261 aa17.75■□□□□ 0.43
GPC1-201ENST00000264039 ABCF3Q9NUQ8 709 aa17.75■□□□□ 0.43
GPC1-201ENST00000264039 BIN2Q9UBW5 565 aaPredicted RBP17.75■□□□□ 0.43
GPC1-201ENST00000264039 SALL4Q9UJQ4 1053 aa17.75■□□□□ 0.43
GPC1-201ENST00000264039 MYH10P35580 1976 aa17.75■□□□□ 0.43
GPC1-201ENST00000264039 CDC42BPGQ6DT37 1551 aa17.75■□□□□ 0.43
GPC1-201ENST00000264039 A8MUI8 341 aa17.75■□□□□ 0.43
GPC1-201ENST00000264039 LUC7L3O95232 432 aaKnown RBP17.75■□□□□ 0.43
GPC1-201ENST00000264039 ITGA4P13612 1032 aa17.75■□□□□ 0.43
GPC1-201ENST00000264039 MSH2P43246 934 aa17.75■□□□□ 0.43
GPC1-201ENST00000264039 BZW1Q7L1Q6 419 aaKnown RBP17.75■□□□□ 0.43
GPC1-201ENST00000264039 TAOK1Q7L7X3 1001 aa17.75■□□□□ 0.43
GPC1-201ENST00000264039 ASIC3Q9UHC3 531 aa17.75■□□□□ 0.43
GPC1-201ENST00000264039 NOC2LQ9Y3T9 749 aaKnown RBP17.75■□□□□ 0.43
GPC1-201ENST00000264039 PPLO60437 1756 aa17.75■□□□□ 0.43
GPC1-201ENST00000264039 RIMS1Q86UR5 1692 aaKnown RBP17.75■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms