RNA–Protein interactions for RNA: ENST00000584083.5

SS18-224, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 663 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-224ENST00000584083 FAM126BQ8IXS8 530 aa23.56■■□□□ 1.36
SS18-224ENST00000584083 SMARCC2Q8TAQ2 1214 aa23.56■■□□□ 1.36
SS18-224ENST00000584083 MTG1Q9BT17 334 aaPredicted RBP23.56■■□□□ 1.36
SS18-224ENST00000584083 MRVI1Q9Y6F6 885 aa23.56■■□□□ 1.36
SS18-224ENST00000584083 GOLGA8AA7E2F4 631 aa23.55■■□□□ 1.36
SS18-224ENST00000584083 GOLGA8BA8MQT2 603 aa23.55■■□□□ 1.36
SS18-224ENST00000584083 KPNA6O60684 536 aa23.55■■□□□ 1.36
SS18-224ENST00000584083 ITGB8P26012 769 aa23.55■■□□□ 1.36
SS18-224ENST00000584083 PURAQ00577 322 aaKnown RBP23.55■■□□□ 1.36
SS18-224ENST00000584083 Q6ZUG5 572 aa23.55■■□□□ 1.36
SS18-224ENST00000584083 VSIG10LQ86VR7 867 aa23.55■■□□□ 1.36
SS18-224ENST00000584083 SLC43A3Q8NBI5 491 aa23.55■■□□□ 1.36
SS18-224ENST00000584083 IL31RAQ8NI17 732 aa23.55■■□□□ 1.36
SS18-224ENST00000584083 GRIN2DO15399 1336 aa23.55■■□□□ 1.36
SS18-224ENST00000584083 A6NJR5 290 aa23.54■■□□□ 1.36
SS18-224ENST00000584083 USP17L6PQ6QN14 398 aa23.54■■□□□ 1.36
SS18-224ENST00000584083 AFG1LQ8WV93 481 aa23.54■■□□□ 1.36
SS18-224ENST00000584083 ZFP91Q96JP5 570 aaPredicted RBP23.54■■□□□ 1.36
SS18-224ENST00000584083 SEZ6LQ9BYH1 1024 aa23.54■■□□□ 1.36
SS18-224ENST00000584083 DDX41Q9UJV9 622 aaKnown RBP23.54■■□□□ 1.36
SS18-224ENST00000584083 TBX21Q9UL17 535 aa23.54■■□□□ 1.36
SS18-224ENST00000584083 PSMA5P28066 241 aa23.53■■□□□ 1.36
SS18-224ENST00000584083 ARHGAP1Q07960 439 aa23.53■■□□□ 1.36
SS18-224ENST00000584083 APOBRQ0VD83 1088 aa23.53■■□□□ 1.36
SS18-224ENST00000584083 HEATR3Q7Z4Q2 680 aa23.53■■□□□ 1.36
SS18-224ENST00000584083 PSTPIP2Q9H939 334 aa23.53■■□□□ 1.36
SS18-224ENST00000584083 SOX1O00570 391 aaPredicted RBP23.52■■□□□ 1.36
SS18-224ENST00000584083 EPB41L2O43491 1005 aaKnown RBP23.52■■□□□ 1.36
SS18-224ENST00000584083 TIMP1P01033 207 aa23.52■■□□□ 1.36
SS18-224ENST00000584083 CASTP20810 708 aaKnown RBP23.52■■□□□ 1.36
SS18-224ENST00000584083 RPS6KB1P23443 525 aa23.52■■□□□ 1.36
SS18-224ENST00000584083 KCNV1Q6PIU1 500 aa23.52■■□□□ 1.36
SS18-224ENST00000584083 BRF1Q92994 677 aa23.52■■□□□ 1.36
SS18-224ENST00000584083 CNTNAP5Q8WYK1 1306 aa23.52■■□□□ 1.36
SS18-224ENST00000584083 PIK3CDO00329 1044 aa23.51■■□□□ 1.35
SS18-224ENST00000584083 MEIS2O14770 477 aa23.51■■□□□ 1.35
SS18-224ENST00000584083 CD4P01730 458 aa23.51■■□□□ 1.35
SS18-224ENST00000584083 CHMP4BP1P59074 171 aa23.51■■□□□ 1.35
SS18-224ENST00000584083 FPGSQ05932 587 aa23.51■■□□□ 1.35
SS18-224ENST00000584083 LRIT3Q3SXY7 679 aa23.51■■□□□ 1.35
SS18-224ENST00000584083 DHX37Q8IY37 1157 aaKnown RBP23.51■■□□□ 1.35
SS18-224ENST00000584083 GPKOWQ92917 476 aaPredicted RBP eCLIP23.51■■□□□ 1.35
SS18-224ENST00000584083 LRCH3Q96II8 777 aa23.51■■□□□ 1.35
SS18-224ENST00000584083 USP26Q9BXU7 913 aa23.51■■□□□ 1.35
SS18-224ENST00000584083 PPP1R12CQ9BZL4 782 aa23.51■■□□□ 1.35
SS18-224ENST00000584083 TRPV6Q9H1D0 765 aa23.51■■□□□ 1.35
SS18-224ENST00000584083 SCN10AQ9Y5Y9 1956 aa23.51■■□□□ 1.35
SS18-224ENST00000584083 RGS20O76081 388 aa23.5■■□□□ 1.35
SS18-224ENST00000584083 MMP3P08254 477 aa23.5■■□□□ 1.35
SS18-224ENST00000584083 METAP2P50579 478 aaKnown RBP eCLIP23.5■■□□□ 1.35
SS18-224ENST00000584083 RCAN1P53805 252 aa23.5■■□□□ 1.35
SS18-224ENST00000584083 LAMC2Q13753 1193 aa23.5■■□□□ 1.35
SS18-224ENST00000584083 SHHQ15465 462 aa23.5■■□□□ 1.35
SS18-224ENST00000584083 FAM47CQ5HY64 1035 aa23.5■■□□□ 1.35
SS18-224ENST00000584083 V9GY48 417 aaPredicted RBP23.5■■□□□ 1.35
SS18-224ENST00000584083 FRMPD4Q14CM0 1322 aa23.5■■□□□ 1.35
SS18-224ENST00000584083 CCDC196A0A1B0GTZ2 297 aa23.49■■□□□ 1.35
SS18-224ENST00000584083 SORBS3O60504 671 aa23.49■■□□□ 1.35
SS18-224ENST00000584083 B4GALT4O60513 344 aa23.49■■□□□ 1.35
SS18-224ENST00000584083 CDC27P30260 824 aa23.49■■□□□ 1.35
SS18-224ENST00000584083 NBPF20Q3BBV1 942 aa23.49■■□□□ 1.35
SS18-224ENST00000584083 GNPTABQ3T906 1256 aa23.49■■□□□ 1.35
SS18-224ENST00000584083 ALDH8A1Q9H2A2 487 aaPredicted RBP23.49■■□□□ 1.35
SS18-224ENST00000584083 FAM217BQ9NTX9 383 aaPredicted RBP23.49■■□□□ 1.35
SS18-224ENST00000584083 STAM2O75886 525 aa23.48■■□□□ 1.35
SS18-224ENST00000584083 TGFB3P10600 412 aa23.48■■□□□ 1.35
SS18-224ENST00000584083 ADD1P35611 737 aaKnown RBP23.48■■□□□ 1.35
SS18-224ENST00000584083 MRPS9P82933 396 aaKnown RBP23.48■■□□□ 1.35
SS18-224ENST00000584083 FUT2Q10981 343 aa23.48■■□□□ 1.35
SS18-224ENST00000584083 DGKDQ16760 1214 aa23.48■■□□□ 1.35
SS18-224ENST00000584083 C9orf50Q5SZB4 431 aa23.48■■□□□ 1.35
SS18-224ENST00000584083 MFSD5Q6N075 450 aa23.48■■□□□ 1.35
SS18-224ENST00000584083 PPP1R13LQ8WUF5 828 aa23.48■■□□□ 1.35
SS18-224ENST00000584083 EMID1Q96A84 441 aaPredicted RBP23.48■■□□□ 1.35
SS18-224ENST00000584083 RTEL1Q9NZ71 1219 aa23.48■■□□□ 1.35
SS18-224ENST00000584083 GGPS1O95749 300 aa23.47■■□□□ 1.35
SS18-224ENST00000584083 CYP2C18P33260 490 aa23.47■■□□□ 1.35
SS18-224ENST00000584083 EPHB4P54760 987 aa23.47■■□□□ 1.35
SS18-224ENST00000584083 NAPAP54920 295 aa23.47■■□□□ 1.35
SS18-224ENST00000584083 UBE2SQ16763 222 aa23.47■■□□□ 1.35
SS18-224ENST00000584083 CELF3Q5SZQ8 465 aaKnown RBP23.47■■□□□ 1.35
SS18-224ENST00000584083 WWC2Q6AWC2 1192 aa23.47■■□□□ 1.35
SS18-224ENST00000584083 RUFY3Q7L099 469 aa23.47■■□□□ 1.35
SS18-224ENST00000584083 HIPK3Q9H422 1215 aa23.47■■□□□ 1.35
SS18-224ENST00000584083 SPDYE3A6NKU9 549 aa23.46■■□□□ 1.35
SS18-224ENST00000584083 SUPT20HL2P0C7V6 817 aa23.46■■□□□ 1.35
SS18-224ENST00000584083 MYSM1Q5VVJ2 828 aa23.46■■□□□ 1.35
SS18-224ENST00000584083 PCNX4Q63HM2 1172 aa23.46■■□□□ 1.35
SS18-224ENST00000584083 XRRA1Q6P2D8 792 aa23.46■■□□□ 1.35
SS18-224ENST00000584083 NFRKBQ6P4R8 1299 aa23.46■■□□□ 1.35
SS18-224ENST00000584083 FBXL16Q8N461 479 aa23.46■■□□□ 1.35
SS18-224ENST00000584083 TMEM199Q8N511 208 aa23.46■■□□□ 1.35
SS18-224ENST00000584083 PPTC7Q8NI37 304 aa23.46■■□□□ 1.35
SS18-224ENST00000584083 SPATA33Q96N06 139 aa23.46■■□□□ 1.35
SS18-224ENST00000584083 MLXIPQ9HAP2 919 aa23.46■■□□□ 1.35
SS18-224ENST00000584083 ZSWIM6Q9HCJ5 1215 aa23.46■■□□□ 1.35
SS18-224ENST00000584083 TRMT13Q9NUP7 481 aaKnown RBP23.46■■□□□ 1.35
SS18-224ENST00000584083 CYP46A1Q9Y6A2 500 aa23.46■■□□□ 1.35
SS18-224ENST00000584083 DOCK5Q9H7D0 1870 aa23.45■■□□□ 1.35
SS18-224ENST00000584083 UBA1P22314 1058 aaKnown RBP23.45■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms