RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 CATSPERGQ6ZRH7 1159 aa15.49■□□□□ 0.07
PTPRF-202ENST00000372405 MOB2Q70IA6 237 aa15.49■□□□□ 0.07
PTPRF-202ENST00000372405 SLFN12Q8IYM2 578 aa15.49■□□□□ 0.07
PTPRF-202ENST00000372405 ZC3H15Q8WU90 426 aaKnown RBP15.49■□□□□ 0.07
PTPRF-202ENST00000372405 TRIM9Q9C026 710 aa15.49■□□□□ 0.07
PTPRF-202ENST00000372405 FANCLQ9NW38 375 aa15.49■□□□□ 0.07
PTPRF-202ENST00000372405 RIPK3Q9Y572 518 aa15.49■□□□□ 0.07
PTPRF-202ENST00000372405 ZC3H4Q9UPT8 1303 aaKnown RBP15.49■□□□□ 0.07
PTPRF-202ENST00000372405 LOC285556D6RIA3 1793 aa15.49■□□□□ 0.07
PTPRF-202ENST00000372405 ZBED4O75132 1171 aa15.49■□□□□ 0.07
PTPRF-202ENST00000372405 MYL1P05976 194 aa15.49■□□□□ 0.07
PTPRF-202ENST00000372405 DSG3P32926 999 aa15.49■□□□□ 0.07
PTPRF-202ENST00000372405 HYIQ5T013 277 aa15.49■□□□□ 0.07
PTPRF-202ENST00000372405 ENOX1Q8TC92 643 aaKnown RBP15.49■□□□□ 0.07
PTPRF-202ENST00000372405 MRFAP1L1Q96HT8 127 aa15.49■□□□□ 0.07
PTPRF-202ENST00000372405 ZFP91Q96JP5 570 aaPredicted RBP15.49■□□□□ 0.07
PTPRF-202ENST00000372405 C7orf25Q9BPX7 421 aa15.49■□□□□ 0.07
PTPRF-202ENST00000372405 TAF1DQ9H5J8 278 aaPredicted RBP15.49■□□□□ 0.07
PTPRF-202ENST00000372405 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.49■□□□□ 0.07
PTPRF-202ENST00000372405 DACH1Q9UI36 760 aa15.49■□□□□ 0.07
PTPRF-202ENST00000372405 VAV3Q9UKW4 847 aa15.49■□□□□ 0.07
PTPRF-202ENST00000372405 RPTORQ8N122 1335 aa15.49■□□□□ 0.07
PTPRF-202ENST00000372405 ESPNB1AK53 854 aa15.48■□□□□ 0.07
PTPRF-202ENST00000372405 PPP1R12BO60237 982 aaPredicted RBP15.48■□□□□ 0.07
PTPRF-202ENST00000372405 PTMAP06454 111 aaKnown RBP15.48■□□□□ 0.07
PTPRF-202ENST00000372405 ERCC5P28715 1186 aaPredicted RBP15.48■□□□□ 0.07
PTPRF-202ENST00000372405 MCM6Q14566 821 aa15.48■□□□□ 0.07
PTPRF-202ENST00000372405 KMT5BQ4FZB7 885 aa15.48■□□□□ 0.07
PTPRF-202ENST00000372405 SLC30A10Q6XR72 485 aa15.48■□□□□ 0.07
PTPRF-202ENST00000372405 ARHGAP30Q7Z6I6 1101 aaPredicted RBP15.48■□□□□ 0.07
PTPRF-202ENST00000372405 CLMNQ96JQ2 1002 aa15.48■□□□□ 0.07
PTPRF-202ENST00000372405 FAM20AQ96MK3 541 aa15.48■□□□□ 0.07
PTPRF-202ENST00000372405 RRAGDQ9NQL2 400 aaPredicted RBP15.48■□□□□ 0.07
PTPRF-202ENST00000372405 STK17AQ9UEE5 414 aa15.48■□□□□ 0.07
PTPRF-202ENST00000372405 ZNF214Q9UL59 606 aaPredicted RBP15.48■□□□□ 0.07
PTPRF-202ENST00000372405 GDAQ9Y2T3 454 aa15.48■□□□□ 0.07
PTPRF-202ENST00000372405 FDX1P10109 184 aa15.47■□□□□ 0.07
PTPRF-202ENST00000372405 CDC25BP30305 580 aa15.47■□□□□ 0.07
PTPRF-202ENST00000372405 ZNF76P36508 570 aa15.47■□□□□ 0.07
PTPRF-202ENST00000372405 KCNB1Q14721 858 aa15.47■□□□□ 0.07
PTPRF-202ENST00000372405 COG2Q14746 738 aa15.47■□□□□ 0.07
PTPRF-202ENST00000372405 ZNF658Q5TYW1 1059 aaPredicted RBP15.47■□□□□ 0.07
PTPRF-202ENST00000372405 IL31RAQ8NI17 732 aa15.47■□□□□ 0.07
PTPRF-202ENST00000372405 SYTL5Q8TDW5 730 aaPredicted RBP15.47■□□□□ 0.07
PTPRF-202ENST00000372405 LARP4BQ92615 738 aaKnown RBP15.47■□□□□ 0.07
PTPRF-202ENST00000372405 RAD54LQ92698 747 aa15.47■□□□□ 0.07
PTPRF-202ENST00000372405 TMOD4Q9NZQ9 345 aa15.47■□□□□ 0.07
PTPRF-202ENST00000372405 NRBP1Q9UHY1 535 aa15.47■□□□□ 0.07
PTPRF-202ENST00000372405 NFE2L3Q9Y4A8 694 aa15.47■□□□□ 0.07
PTPRF-202ENST00000372405 MYMKA6NI61 221 aa15.47■□□□□ 0.07
PTPRF-202ENST00000372405 MED24O75448 989 aa15.47■□□□□ 0.07
PTPRF-202ENST00000372405 ZNF18P17022 549 aa15.47■□□□□ 0.07
PTPRF-202ENST00000372405 DHX8Q14562 1220 aaKnown RBP15.47■□□□□ 0.07
PTPRF-202ENST00000372405 TMEM132BQ14DG7 1078 aa15.47■□□□□ 0.07
PTPRF-202ENST00000372405 CEP55Q53EZ4 464 aa15.47■□□□□ 0.07
PTPRF-202ENST00000372405 CT47A1Q5JQC4 288 aaPredicted RBP15.47■□□□□ 0.07
PTPRF-202ENST00000372405 TREML2Q5T2D2 321 aa15.47■□□□□ 0.07
PTPRF-202ENST00000372405 KLHL10Q6JEL2 608 aa15.47■□□□□ 0.07
PTPRF-202ENST00000372405 POTEEQ6S8J3 1075 aa15.47■□□□□ 0.07
PTPRF-202ENST00000372405 MCF2L2Q86YR7 1114 aa15.47■□□□□ 0.07
PTPRF-202ENST00000372405 CDK5RAP3Q96JB5 506 aa15.47■□□□□ 0.07
PTPRF-202ENST00000372405 TRERF1Q96PN7 1200 aa15.47■□□□□ 0.07
PTPRF-202ENST00000372405 RMND1Q9NWS8 449 aa15.47■□□□□ 0.07
PTPRF-202ENST00000372405 CSADQ9Y600 493 aa15.47■□□□□ 0.07
PTPRF-202ENST00000372405 FRMPD4Q14CM0 1322 aa15.46■□□□□ 0.07
PTPRF-202ENST00000372405 POTEB3A0JP26 581 aa15.46■□□□□ 0.07
PTPRF-202ENST00000372405 SPDYE16A6NNV3 312 aaPredicted RBP15.46■□□□□ 0.07
PTPRF-202ENST00000372405 MEIS1O00470 390 aa15.46■□□□□ 0.07
PTPRF-202ENST00000372405 RHOBTB3O94955 611 aa15.46■□□□□ 0.07
PTPRF-202ENST00000372405 CCT6AP40227 531 aaKnown RBP15.46■□□□□ 0.07
PTPRF-202ENST00000372405 IREB2P48200 963 aaKnown RBP15.46■□□□□ 0.07
PTPRF-202ENST00000372405 RPS6P62753 249 aaKnown RBP15.46■□□□□ 0.07
PTPRF-202ENST00000372405 EAPPQ56P03 285 aaPredicted RBP15.46■□□□□ 0.07
PTPRF-202ENST00000372405 POTEBQ6S5H4 581 aa15.46■□□□□ 0.07
PTPRF-202ENST00000372405 ZSCAN30Q86W11 494 aa15.46■□□□□ 0.07
PTPRF-202ENST00000372405 RBM46Q8TBY0 533 aaKnown RBP15.46■□□□□ 0.07
PTPRF-202ENST00000372405 ZNF830Q96NB3 372 aaPredicted RBP15.46■□□□□ 0.07
PTPRF-202ENST00000372405 XPO4Q9C0E2 1151 aaKnown RBP15.46■□□□□ 0.07
PTPRF-202ENST00000372405 ELP3Q9H9T3 547 aa15.46■□□□□ 0.07
PTPRF-202ENST00000372405 IFNKQ9P0W0 207 aa15.46■□□□□ 0.07
PTPRF-202ENST00000372405 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP15.46■□□□□ 0.07
PTPRF-202ENST00000372405 A0A0G2JMZ2 1700 aa15.46■□□□□ 0.07
PTPRF-202ENST00000372405 IRF6O14896 467 aa15.45■□□□□ 0.06
PTPRF-202ENST00000372405 GRIN3BO60391 1043 aa15.45■□□□□ 0.06
PTPRF-202ENST00000372405 POTEIP0CG38 1075 aa15.45■□□□□ 0.06
PTPRF-202ENST00000372405 POTEJP0CG39 1038 aa15.45■□□□□ 0.06
PTPRF-202ENST00000372405 SPATA31C1P0DKV0 1188 aa15.45■□□□□ 0.06
PTPRF-202ENST00000372405 ARP10275 920 aa15.45■□□□□ 0.06
PTPRF-202ENST00000372405 ITGB5P18084 799 aa15.45■□□□□ 0.06
PTPRF-202ENST00000372405 PRCPP42785 496 aa15.45■□□□□ 0.06
PTPRF-202ENST00000372405 STX17P56962 302 aa15.45■□□□□ 0.06
PTPRF-202ENST00000372405 FANCCQ00597 558 aa15.45■□□□□ 0.06
PTPRF-202ENST00000372405 CCDC144BQ3MJ40 725 aa15.45■□□□□ 0.06
PTPRF-202ENST00000372405 HSP90AA4PQ58FG1 418 aa15.45■□□□□ 0.06
PTPRF-202ENST00000372405 SV2BQ7L1I2 683 aa15.45■□□□□ 0.06
PTPRF-202ENST00000372405 PURBQ96QR8 312 aaKnown RBP15.45■□□□□ 0.06
PTPRF-202ENST00000372405 EHMT1Q9H9B1 1298 aa15.45■□□□□ 0.06
PTPRF-202ENST00000372405 SAMSN1Q9NSI8 373 aaKnown RBP15.45■□□□□ 0.06
PTPRF-202ENST00000372405 RNF146Q9NTX7 359 aa15.45■□□□□ 0.06
PTPRF-202ENST00000372405 CTDP1Q9Y5B0 961 aaPredicted RBP15.45■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms