RNA–Protein interactions for RNA: ENST00000249837.7

VPS13C-201, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VPS13C, Length 13,300 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-201ENST00000249837 EIF3CLB5ME19 914 aaKnown RBP5.06□□□□□ -1.6
VPS13C-201ENST00000249837 PPP1R3GB7ZBB8 358 aa5.06□□□□□ -1.6
VPS13C-201ENST00000249837 H3BQF6 201 aa5.06□□□□□ -1.6
VPS13C-201ENST00000249837 TBC1D10BQ4KMP7 808 aaPredicted RBP5.06□□□□□ -1.6
VPS13C-201ENST00000249837 ALS2CLQ60I27 953 aa5.06□□□□□ -1.6
VPS13C-201ENST00000249837 EIF3CQ99613 913 aaKnown RBP5.06□□□□□ -1.6
VPS13C-201ENST00000249837 STMN4Q9H169 189 aaPredicted RBP5.06□□□□□ -1.6
VPS13C-201ENST00000249837 THAP9Q9H5L6 903 aa5.06□□□□□ -1.6
VPS13C-201ENST00000249837 IKBKGQ9Y6K9 419 aa5.06□□□□□ -1.6
VPS13C-201ENST00000249837 STAT1P42224 750 aa5.06□□□□□ -1.6
VPS13C-201ENST00000249837 MAGEA9P43362 315 aa5.06□□□□□ -1.6
VPS13C-201ENST00000249837 DHX9Q08211 1270 aaKnown RBP5.06□□□□□ -1.6
VPS13C-201ENST00000249837 GALNT17Q6IS24 598 aa5.06□□□□□ -1.6
VPS13C-201ENST00000249837 RETREG2Q8NC44 543 aa5.06□□□□□ -1.6
VPS13C-201ENST00000249837 CALRP27797 417 aaKnown RBP5.06□□□□□ -1.6
VPS13C-201ENST00000249837 STAT3P40763 770 aa5.06□□□□□ -1.6
VPS13C-201ENST00000249837 TRIP13Q15645 432 aaPredicted RBP5.06□□□□□ -1.6
VPS13C-201ENST00000249837 AK8Q96MA6 479 aa5.06□□□□□ -1.6
VPS13C-201ENST00000249837 SERPINA10Q9UK55 444 aa5.06□□□□□ -1.6
VPS13C-201ENST00000249837 GYPCP04921 128 aa5.06□□□□□ -1.6
VPS13C-201ENST00000249837 GFPT1Q06210 699 aaPredicted RBP5.06□□□□□ -1.6
VPS13C-201ENST00000249837 MTMR3Q13615 1198 aa5.06□□□□□ -1.6
VPS13C-201ENST00000249837 CCDC127Q96BQ5 260 aa5.06□□□□□ -1.6
VPS13C-201ENST00000249837 HOMER2Q9NSB8 354 aa5.06□□□□□ -1.6
VPS13C-201ENST00000249837 AGPAT5Q9NUQ2 364 aa5.06□□□□□ -1.6
VPS13C-201ENST00000249837 NOVA2Q9UNW9 492 aaKnown RBP5.06□□□□□ -1.6
VPS13C-201ENST00000249837 COL4A3BPQ9Y5P4 624 aa5.06□□□□□ -1.6
VPS13C-201ENST00000249837 NPHP3-ACAD11A0A0J9YXS1 232 aa5.05□□□□□ -1.6
VPS13C-201ENST00000249837 A0A1B0GTH6 734 aa5.05□□□□□ -1.6
VPS13C-201ENST00000249837 MYMKA6NI61 221 aa5.05□□□□□ -1.6
VPS13C-201ENST00000249837 CLIC2O15247 247 aa5.05□□□□□ -1.6
VPS13C-201ENST00000249837 LRRN2O75325 713 aa5.05□□□□□ -1.6
VPS13C-201ENST00000249837 XRCC5P13010 732 aaKnown RBP5.05□□□□□ -1.6
VPS13C-201ENST00000249837 CYP2C19P33261 490 aa5.05□□□□□ -1.6
VPS13C-201ENST00000249837 SGMS1Q86VZ5 419 aa5.05□□□□□ -1.6
VPS13C-201ENST00000249837 FAM133AQ8N9E0 248 aa5.05□□□□□ -1.6
VPS13C-201ENST00000249837 MAGEF1Q9HAY2 307 aa5.05□□□□□ -1.6
VPS13C-201ENST00000249837 STIM2Q9P246 746 aa5.05□□□□□ -1.6
VPS13C-201ENST00000249837 TBC1D8O95759 1140 aa5.05□□□□□ -1.6
VPS13C-201ENST00000249837 CSF1RP07333 972 aa5.05□□□□□ -1.6
VPS13C-201ENST00000249837 CLTAP09496 248 aa5.05□□□□□ -1.6
VPS13C-201ENST00000249837 SNX1Q13596 522 aa5.05□□□□□ -1.6
VPS13C-201ENST00000249837 EXOC3L4Q17RC7 722 aa5.05□□□□□ -1.6
VPS13C-201ENST00000249837 CCNI2Q6ZMN8 369 aaPredicted RBP5.05□□□□□ -1.6
VPS13C-201ENST00000249837 CCDC63Q8NA47 563 aa5.05□□□□□ -1.6
VPS13C-201ENST00000249837 MAGOHBQ96A72 148 aaKnown RBP5.05□□□□□ -1.6
VPS13C-201ENST00000249837 MMS19Q96T76 1030 aa5.05□□□□□ -1.6
VPS13C-201ENST00000249837 TCP11Q8WWU5 503 aa5.05□□□□□ -1.6
VPS13C-201ENST00000249837 CELF1Q92879 486 aaKnown RBP5.05□□□□□ -1.6
VPS13C-201ENST00000249837 MAP3K14Q99558 947 aa5.05□□□□□ -1.6
VPS13C-201ENST00000249837 NAP1L4Q99733 375 aaKnown RBP5.05□□□□□ -1.6
VPS13C-201ENST00000249837 STK38LQ9Y2H1 464 aa5.05□□□□□ -1.6
VPS13C-201ENST00000249837 CYP19A1P11511 503 aaPredicted RBP5.05□□□□□ -1.6
VPS13C-201ENST00000249837 RAB17Q9H0T7 212 aa5.05□□□□□ -1.6
VPS13C-201ENST00000249837 KCNJ6P48051 423 aa5.05□□□□□ -1.6
VPS13C-201ENST00000249837 CDK8P49336 464 aa5.05□□□□□ -1.6
VPS13C-201ENST00000249837 HHATQ5VTY9 493 aa5.05□□□□□ -1.6
VPS13C-201ENST00000249837 HAUS3Q68CZ6 603 aa5.05□□□□□ -1.6
VPS13C-201ENST00000249837 CCDC105Q8IYK2 499 aa5.05□□□□□ -1.6
VPS13C-201ENST00000249837 LARP4BQ92615 738 aaKnown RBP5.05□□□□□ -1.6
VPS13C-201ENST00000249837 OSBPL9Q96SU4 736 aa5.05□□□□□ -1.6
VPS13C-201ENST00000249837 FAM184BQ9ULE4 1060 aa5.05□□□□□ -1.6
VPS13C-201ENST00000249837 TECPR2O15040 1411 aa5.05□□□□□ -1.6
VPS13C-201ENST00000249837 BUB1BO60566 1050 aaPredicted RBP5.05□□□□□ -1.6
VPS13C-201ENST00000249837 PRPF6O94906 941 aaKnown RBP5.05□□□□□ -1.6
VPS13C-201ENST00000249837 PCK1P35558 622 aa5.05□□□□□ -1.6
VPS13C-201ENST00000249837 CASP7P55210 303 aa5.05□□□□□ -1.6
VPS13C-201ENST00000249837 FKBP3Q00688 224 aaKnown RBP5.05□□□□□ -1.6
VPS13C-201ENST00000249837 ARL6IP4Q66PJ3 421 aaKnown RBP5.05□□□□□ -1.6
VPS13C-201ENST00000249837 DNAJC17Q9NVM6 304 aaKnown RBP5.05□□□□□ -1.6
VPS13C-201ENST00000249837 FRMD3A2A2Y4 597 aa5.05□□□□□ -1.6
VPS13C-201ENST00000249837 UBAP1LF5GYI3 381 aa5.05□□□□□ -1.6
VPS13C-201ENST00000249837 GKAP1Q5VSY0 366 aaPredicted RBP5.05□□□□□ -1.6
VPS13C-201ENST00000249837 PPP4R3AQ6IN85 833 aa5.05□□□□□ -1.6
VPS13C-201ENST00000249837 ADSSL1Q8N142 457 aa5.05□□□□□ -1.6
VPS13C-201ENST00000249837 FBF1Q8TES7 1133 aa5.05□□□□□ -1.6
VPS13C-201ENST00000249837 TMEM60Q9H2L4 133 aa5.05□□□□□ -1.6
VPS13C-201ENST00000249837 FAM217BQ9NTX9 383 aaPredicted RBP5.05□□□□□ -1.6
VPS13C-201ENST00000249837 SNX24Q9Y343 169 aa5.05□□□□□ -1.6
VPS13C-201ENST00000249837 LRRC53A6NM62 1247 aa5.05□□□□□ -1.6
VPS13C-201ENST00000249837 NR2F2P24468 414 aa5.05□□□□□ -1.6
VPS13C-201ENST00000249837 DPYDQ12882 1025 aa5.05□□□□□ -1.6
VPS13C-201ENST00000249837 ICE2Q659A1 982 aa5.05□□□□□ -1.6
VPS13C-201ENST00000249837 VSIG1Q86XK7 387 aa5.05□□□□□ -1.6
VPS13C-201ENST00000249837 BRIP1Q9BX63 1249 aa5.05□□□□□ -1.6
VPS13C-201ENST00000249837 CAPN11Q9UMQ6 739 aa5.05□□□□□ -1.6
VPS13C-201ENST00000249837 PXDNQ92626 1479 aa5.05□□□□□ -1.6
VPS13C-201ENST00000249837 POTEMA6NI47 508 aa5.05□□□□□ -1.6
VPS13C-201ENST00000249837 MAP2K2P36507 400 aa5.05□□□□□ -1.6
VPS13C-201ENST00000249837 TADA2BQ86TJ2 420 aa5.05□□□□□ -1.6
VPS13C-201ENST00000249837 IQCDQ96DY2 449 aa5.05□□□□□ -1.6
VPS13C-201ENST00000249837 PLCB1Q9NQ66 1216 aa5.05□□□□□ -1.6
VPS13C-201ENST00000249837 HPSEQ9Y251 543 aa5.05□□□□□ -1.6
VPS13C-201ENST00000249837 A6NNZ2 444 aa5.05□□□□□ -1.6
VPS13C-201ENST00000249837 TXNRD1Q16881 649 aa5.05□□□□□ -1.6
VPS13C-201ENST00000249837 TUBB8Q3ZCM7 444 aa5.05□□□□□ -1.6
VPS13C-201ENST00000249837 ZNF365Q70YC5 407 aa5.05□□□□□ -1.6
VPS13C-201ENST00000249837 CPXCR1Q8N123 301 aa5.05□□□□□ -1.6
VPS13C-201ENST00000249837 RIC8AQ9NPQ8 531 aa5.05□□□□□ -1.6
VPS13C-201ENST00000249837 SASH3O75995 380 aa5.04□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms