RNA–Protein interactions for RNA: ENST00000640482.1

VEGFA-230, Transcript of vascular endothelial growth factor A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VEGFA, Length 1,065 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-230ENST00000640482 LY9Q9HBG7 655 aa29.27■■■□□ 2.28
VEGFA-230ENST00000640482 POLR3EQ9NVU0 708 aa29.27■■■□□ 2.28
VEGFA-230ENST00000640482 COL20A1Q9P218 1284 aa29.27■■■□□ 2.28
VEGFA-230ENST00000640482 MYH6P13533 1939 aa29.26■■■□□ 2.27
VEGFA-230ENST00000640482 ITGA7Q13683 1181 aa29.26■■■□□ 2.27
VEGFA-230ENST00000640482 NECTIN1Q15223 517 aa29.26■■■□□ 2.27
VEGFA-230ENST00000640482 ARHGEF16Q5VV41 709 aa29.26■■■□□ 2.27
VEGFA-230ENST00000640482 SAMD3Q8N6K7 520 aa29.26■■■□□ 2.27
VEGFA-230ENST00000640482 TMEM87BQ96K49 555 aa29.26■■■□□ 2.27
VEGFA-230ENST00000640482 PIGSQ96S52 555 aa29.26■■■□□ 2.27
VEGFA-230ENST00000640482 MAP3K20Q9NYL2 800 aaKnown RBP29.26■■■□□ 2.27
VEGFA-230ENST00000640482 PPP1R11O60927 126 aaPredicted RBP29.25■■■□□ 2.27
VEGFA-230ENST00000640482 DDAH1O94760 285 aa29.25■■■□□ 2.27
VEGFA-230ENST00000640482 TIMP1P01033 207 aa29.25■■■□□ 2.27
VEGFA-230ENST00000640482 TXNP10599 105 aaKnown RBP29.25■■■□□ 2.27
VEGFA-230ENST00000640482 HSD17B4P51659 736 aa29.25■■■□□ 2.27
VEGFA-230ENST00000640482 GHRHRQ02643 423 aa29.25■■■□□ 2.27
VEGFA-230ENST00000640482 FPGSQ05932 587 aa29.25■■■□□ 2.27
VEGFA-230ENST00000640482 SHHQ15465 462 aa29.25■■■□□ 2.27
VEGFA-230ENST00000640482 STXBP2Q15833 593 aa29.25■■■□□ 2.27
VEGFA-230ENST00000640482 ZNF654Q8IZM8 581 aa29.25■■■□□ 2.27
VEGFA-230ENST00000640482 TMTC2Q8N394 836 aa29.25■■■□□ 2.27
VEGFA-230ENST00000640482 CTCFLQ8NI51 663 aaPredicted RBP29.25■■■□□ 2.27
VEGFA-230ENST00000640482 CCDC136Q96JN2 1154 aa29.25■■■□□ 2.27
VEGFA-230ENST00000640482 KIF5BP33176 963 aa29.24■■■□□ 2.27
VEGFA-230ENST00000640482 SLC35G1Q2M3R5 365 aa29.24■■■□□ 2.27
VEGFA-230ENST00000640482 RNF20Q5VTR2 975 aa29.24■■■□□ 2.27
VEGFA-230ENST00000640482 NFXL1Q6ZNB6 911 aa29.24■■■□□ 2.27
VEGFA-230ENST00000640482 GPHNQ9NQX3 736 aaPredicted RBP29.24■■■□□ 2.27
VEGFA-230ENST00000640482 PNMA6FA0A0J9YX94 578 aa29.23■■■□□ 2.27
VEGFA-230ENST00000640482 OPLAHO14841 1288 aa29.23■■■□□ 2.27
VEGFA-230ENST00000640482 CYTH3O43739 400 aa29.23■■■□□ 2.27
VEGFA-230ENST00000640482 CD4P01730 458 aa29.23■■■□□ 2.27
VEGFA-230ENST00000640482 C9orf50Q5SZB4 431 aa29.23■■■□□ 2.27
VEGFA-230ENST00000640482 PXMP2Q9NR77 195 aa29.23■■■□□ 2.27
VEGFA-230ENST00000640482 CCDC69A6NI79 296 aa29.22■■■□□ 2.27
VEGFA-230ENST00000640482 SH2B2O14492 632 aaPredicted RBP29.22■■■□□ 2.27
VEGFA-230ENST00000640482 CDC45O75419 566 aa29.22■■■□□ 2.27
VEGFA-230ENST00000640482 MYL3P08590 195 aa29.22■■■□□ 2.27
VEGFA-230ENST00000640482 EIF2AK2P19525 551 aaKnown RBP29.22■■■□□ 2.27
VEGFA-230ENST00000640482 MFSD5Q6N075 450 aa29.22■■■□□ 2.27
VEGFA-230ENST00000640482 SEPT14Q6ZU15 432 aa29.22■■■□□ 2.27
VEGFA-230ENST00000640482 GRIN2DO15399 1336 aa29.21■■■□□ 2.27
VEGFA-230ENST00000640482 KPNA6O60684 536 aa29.21■■■□□ 2.27
VEGFA-230ENST00000640482 PSMC6P62333 389 aa29.21■■■□□ 2.27
VEGFA-230ENST00000640482 PURAQ00577 322 aaKnown RBP29.21■■■□□ 2.27
VEGFA-230ENST00000640482 COPS5Q92905 334 aa29.21■■■□□ 2.27
VEGFA-230ENST00000640482 MTG1Q9BT17 334 aaPredicted RBP29.21■■■□□ 2.27
VEGFA-230ENST00000640482 EIF3JO75822 258 aaKnown RBP29.2■■■□□ 2.26
VEGFA-230ENST00000640482 ARIH2O95376 493 aa29.2■■■□□ 2.26
VEGFA-230ENST00000640482 NR3C2P08235 984 aa29.2■■■□□ 2.26
VEGFA-230ENST00000640482 LIFRP42702 1097 aa29.2■■■□□ 2.26
VEGFA-230ENST00000640482 GNAQP50148 359 aa29.2■■■□□ 2.26
VEGFA-230ENST00000640482 DEFB123Q8N688 67 aa29.2■■■□□ 2.26
VEGFA-230ENST00000640482 LZTS2Q9BRK4 669 aa29.2■■■□□ 2.26
VEGFA-230ENST00000640482 MYL10Q9BUA6 226 aa29.2■■■□□ 2.26
VEGFA-230ENST00000640482 SPZ1Q9BXG8 430 aa29.2■■■□□ 2.26
VEGFA-230ENST00000640482 A6NJR5 290 aa29.19■■■□□ 2.26
VEGFA-230ENST00000640482 GCOM1H8Y6P7 765 aaPredicted RBP29.19■■■□□ 2.26
VEGFA-230ENST00000640482 POLR2MP0CAP2 368 aa29.19■■■□□ 2.26
VEGFA-230ENST00000640482 CALM1P0DP23 149 aa29.19■■■□□ 2.26
VEGFA-230ENST00000640482 CALM2P0DP24 149 aa29.19■■■□□ 2.26
VEGFA-230ENST00000640482 CALM3P0DP25 149 aa29.19■■■□□ 2.26
VEGFA-230ENST00000640482 PPIGQ13427 754 aaKnown RBP eCLIP29.19■■■□□ 2.261e-7■■□□□ 12.5
VEGFA-230ENST00000640482 CCDC62Q6P9F0 684 aa29.19■■■□□ 2.26
VEGFA-230ENST00000640482 TMEM199Q8N511 208 aa29.19■■■□□ 2.26
VEGFA-230ENST00000640482 GH1P01241 217 aa29.18■■■□□ 2.26
VEGFA-230ENST00000640482 SMARCA1P28370 1054 aa29.18■■■□□ 2.26
VEGFA-230ENST00000640482 HOXA13P31271 388 aaPredicted RBP29.18■■■□□ 2.26
VEGFA-230ENST00000640482 EPHB4P54760 987 aa29.18■■■□□ 2.26
VEGFA-230ENST00000640482 RRP36Q96EU6 259 aaKnown RBP29.18■■■□□ 2.26
VEGFA-230ENST00000640482 RNPC3Q96LT9 517 aaKnown RBP29.18■■■□□ 2.26
VEGFA-230ENST00000640482 PPP1R12CQ9BZL4 782 aa29.18■■■□□ 2.26
VEGFA-230ENST00000640482 LY6KQ17RY6 165 aa29.17■■■□□ 2.26
VEGFA-230ENST00000640482 PIBF1Q8WXW3 757 aa29.17■■■□□ 2.26
VEGFA-230ENST00000640482 PDCD2LQ9BRP1 358 aa29.17■■■□□ 2.26
VEGFA-230ENST00000640482 SEC63Q9UGP8 760 aaKnown RBP29.17■■■□□ 2.26
VEGFA-230ENST00000640482 B4GALT4O60513 344 aa29.16■■■□□ 2.26
VEGFA-230ENST00000640482 Q7L0L9 218 aa29.16■■■□□ 2.26
VEGFA-230ENST00000640482 TRPV6Q9H1D0 765 aa29.16■■■□□ 2.26
VEGFA-230ENST00000640482 ALDH8A1Q9H2A2 487 aaPredicted RBP29.16■■■□□ 2.26
VEGFA-230ENST00000640482 HIPK3Q9H422 1215 aa29.16■■■□□ 2.26
VEGFA-230ENST00000640482 SLC12A7Q9Y666 1083 aa29.16■■■□□ 2.26
VEGFA-230ENST00000640482 MRVI1Q9Y6F6 885 aa29.16■■■□□ 2.26
VEGFA-230ENST00000640482 MYCLP12524 364 aaPredicted RBP29.15■■■□□ 2.26
VEGFA-230ENST00000640482 COL9A3Q14050 684 aaPredicted RBP29.15■■■□□ 2.26
VEGFA-230ENST00000640482 FAM109BQ6ICB4 259 aaPredicted RBP29.15■■■□□ 2.26
VEGFA-230ENST00000640482 NEK1Q96PY6 1258 aa29.15■■■□□ 2.26
VEGFA-230ENST00000640482 LRRC2Q9BYS8 371 aa29.15■■■□□ 2.26
VEGFA-230ENST00000640482 SUPT20HL2P0C7V6 817 aa29.14■■■□□ 2.26
VEGFA-230ENST00000640482 ARHGAP1Q07960 439 aa29.14■■■□□ 2.26
VEGFA-230ENST00000640482 PGM5Q15124 567 aa29.14■■■□□ 2.26
VEGFA-230ENST00000640482 FCHSD1Q86WN1 690 aa29.14■■■□□ 2.26
VEGFA-230ENST00000640482 AFG1LQ8WV93 481 aa29.14■■■□□ 2.26
VEGFA-230ENST00000640482 DDX41Q9UJV9 622 aaKnown RBP29.14■■■□□ 2.26
VEGFA-230ENST00000640482 NEFLP07196 543 aa29.13■■■□□ 2.25
VEGFA-230ENST00000640482 CSF2RAP15509 400 aa29.13■■■□□ 2.25
VEGFA-230ENST00000640482 CCND2P30279 289 aa29.13■■■□□ 2.25
VEGFA-230ENST00000640482 CYP2C18P33260 490 aa29.13■■■□□ 2.25
VEGFA-230ENST00000640482 SMAD3P84022 425 aaKnown RBP29.13■■■□□ 2.25
Retrieved 100 of 20,778 RNA–protein pairs in 73.2 ms