RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 GRIN2DO15399 1336 aa22.16■■□□□ 1.14
CCDC28A-203ENST00000617445 A6NJR5 290 aa22.16■■□□□ 1.14
CCDC28A-203ENST00000617445 TXNP10599 105 aaKnown RBP22.16■■□□□ 1.14
CCDC28A-203ENST00000617445 EPHB4P54760 987 aa22.16■■□□□ 1.14
CCDC28A-203ENST00000617445 TROAPQ12815 778 aa22.16■■□□□ 1.14
CCDC28A-203ENST00000617445 TMEM67Q5HYA8 995 aa22.16■■□□□ 1.14
CCDC28A-203ENST00000617445 CENPQQ7L2Z9 268 aaPredicted RBP22.16■■□□□ 1.14
CCDC28A-203ENST00000617445 CATIPQ7Z7H3 387 aa22.16■■□□□ 1.14
CCDC28A-203ENST00000617445 MAP3K14Q99558 947 aa22.16■■□□□ 1.14
CCDC28A-203ENST00000617445 PCDHA1Q9Y5I3 950 aa22.16■■□□□ 1.14
CCDC28A-203ENST00000617445 SUPT20HL2P0C7V6 817 aa22.15■■□□□ 1.14
CCDC28A-203ENST00000617445 PTGS1P23219 599 aa22.15■■□□□ 1.14
CCDC28A-203ENST00000617445 HSD17B4P51659 736 aa22.15■■□□□ 1.14
CCDC28A-203ENST00000617445 PURAQ00577 322 aaKnown RBP22.15■■□□□ 1.14
CCDC28A-203ENST00000617445 ZNF697Q5TEC3 545 aa22.15■■□□□ 1.14
CCDC28A-203ENST00000617445 ARHGEF16Q5VV41 709 aa22.15■■□□□ 1.14
CCDC28A-203ENST00000617445 STOX1Q6ZVD7 989 aa22.15■■□□□ 1.14
CCDC28A-203ENST00000617445 MB21D2Q8IYB1 491 aaPredicted RBP22.15■■□□□ 1.14
CCDC28A-203ENST00000617445 TMTC2Q8N394 836 aa22.15■■□□□ 1.14
CCDC28A-203ENST00000617445 IGDCC4Q8TDY8 1250 aa22.15■■□□□ 1.14
CCDC28A-203ENST00000617445 MTG1Q9BT17 334 aaPredicted RBP22.15■■□□□ 1.14
CCDC28A-203ENST00000617445 KIAA1217Q5T5P2 1943 aa22.15■■□□□ 1.14
CCDC28A-203ENST00000617445 EIF3JO75822 258 aaKnown RBP22.14■■□□□ 1.13
CCDC28A-203ENST00000617445 CFBP00751 764 aa22.14■■□□□ 1.13
CCDC28A-203ENST00000617445 BMP2KLQ5H9B9 411 aa22.14■■□□□ 1.13
CCDC28A-203ENST00000617445 CCDC62Q6P9F0 684 aa22.14■■□□□ 1.13
CCDC28A-203ENST00000617445 ESYT1Q9BSJ8 1104 aa22.14■■□□□ 1.13
CCDC28A-203ENST00000617445 HIPK3Q9H422 1215 aa22.14■■□□□ 1.13
CCDC28A-203ENST00000617445 COL20A1Q9P218 1284 aa22.14■■□□□ 1.13
CCDC28A-203ENST00000617445 TAF6LQ9Y6J9 622 aa22.14■■□□□ 1.13
CCDC28A-203ENST00000617445 SCN10AQ9Y5Y9 1956 aa22.14■■□□□ 1.13
CCDC28A-203ENST00000617445 PNMA6FA0A0J9YX94 578 aa22.13■■□□□ 1.13
CCDC28A-203ENST00000617445 MYL3P08590 195 aa22.13■■□□□ 1.13
CCDC28A-203ENST00000617445 PSMC6P62333 389 aa22.13■■□□□ 1.13
CCDC28A-203ENST00000617445 CASC1Q6TDU7 716 aa22.13■■□□□ 1.13
CCDC28A-203ENST00000617445 LSG1Q9H089 658 aaKnown RBP22.13■■□□□ 1.13
CCDC28A-203ENST00000617445 ALDH8A1Q9H2A2 487 aaPredicted RBP22.13■■□□□ 1.13
CCDC28A-203ENST00000617445 PXMP2Q9NR77 195 aa22.13■■□□□ 1.13
CCDC28A-203ENST00000617445 TMEM265A0A087WTH1 108 aa22.12■■□□□ 1.13
CCDC28A-203ENST00000617445 HSFX4A0A1B0GTS1 333 aaPredicted RBP22.12■■□□□ 1.13
CCDC28A-203ENST00000617445 HSFX3A0A1B0GWH4 333 aaPredicted RBP22.12■■□□□ 1.13
CCDC28A-203ENST00000617445 GH1P01241 217 aa22.12■■□□□ 1.13
CCDC28A-203ENST00000617445 NR3C2P08235 984 aa22.12■■□□□ 1.13
CCDC28A-203ENST00000617445 SMARCA1P28370 1054 aa22.12■■□□□ 1.13
CCDC28A-203ENST00000617445 KIF5BP33176 963 aa22.12■■□□□ 1.13
CCDC28A-203ENST00000617445 MCM5P33992 734 aa22.12■■□□□ 1.13
CCDC28A-203ENST00000617445 ANTXR2P58335 489 aa22.12■■□□□ 1.13
CCDC28A-203ENST00000617445 NFRKBQ6P4R8 1299 aa22.12■■□□□ 1.13
CCDC28A-203ENST00000617445 PSRC1Q6PGN9 363 aaPredicted RBP22.12■■□□□ 1.13
CCDC28A-203ENST00000617445 CHST3Q7LGC8 479 aa22.12■■□□□ 1.13
CCDC28A-203ENST00000617445 TMEM87BQ96K49 555 aa22.12■■□□□ 1.13
CCDC28A-203ENST00000617445 PPP1R12CQ9BZL4 782 aa22.12■■□□□ 1.13
CCDC28A-203ENST00000617445 OPLAHO14841 1288 aa22.11■■□□□ 1.13
CCDC28A-203ENST00000617445 B4GALT4O60513 344 aa22.11■■□□□ 1.13
CCDC28A-203ENST00000617445 PPP1R11O60927 126 aaPredicted RBP22.11■■□□□ 1.13
CCDC28A-203ENST00000617445 DDAH1O94760 285 aa22.11■■□□□ 1.13
CCDC28A-203ENST00000617445 CSF2RAP15509 400 aa22.11■■□□□ 1.13
CCDC28A-203ENST00000617445 PTPN11Q06124 597 aaPredicted RBP22.11■■□□□ 1.13
CCDC28A-203ENST00000617445 TMEM240Q5SV17 173 aa22.11■■□□□ 1.13
CCDC28A-203ENST00000617445 KCNV1Q6PIU1 500 aa22.11■■□□□ 1.13
CCDC28A-203ENST00000617445 SEPT14Q6ZU15 432 aa22.11■■□□□ 1.13
CCDC28A-203ENST00000617445 HOMER1Q86YM7 354 aa22.11■■□□□ 1.13
CCDC28A-203ENST00000617445 PIGSQ96S52 555 aa22.11■■□□□ 1.13
CCDC28A-203ENST00000617445 BUD13Q9BRD0 619 aaKnown RBP eCLIP22.11■■□□□ 1.13
CCDC28A-203ENST00000617445 LZTS2Q9BRK4 669 aa22.11■■□□□ 1.13
CCDC28A-203ENST00000617445 NOC4LQ9BVI4 516 aaKnown RBP22.11■■□□□ 1.13
CCDC28A-203ENST00000617445 TRPV6Q9H1D0 765 aa22.11■■□□□ 1.13
CCDC28A-203ENST00000617445 SENP2Q9HC62 589 aa22.11■■□□□ 1.13
CCDC28A-203ENST00000617445 IL23AQ9NPF7 189 aa22.11■■□□□ 1.13
CCDC28A-203ENST00000617445 COL6A3P12111 3177 aa22.1■■□□□ 1.13
CCDC28A-203ENST00000617445 ARIH2O95376 493 aa22.1■■□□□ 1.13
CCDC28A-203ENST00000617445 EIF2AK2P19525 551 aaKnown RBP22.1■■□□□ 1.13
CCDC28A-203ENST00000617445 CYP2C18P33260 490 aa22.1■■□□□ 1.13
CCDC28A-203ENST00000617445 GNAQP50148 359 aa22.1■■□□□ 1.13
CCDC28A-203ENST00000617445 CTCFLQ8NI51 663 aaPredicted RBP22.1■■□□□ 1.13
CCDC28A-203ENST00000617445 COPS5Q92905 334 aa22.1■■□□□ 1.13
CCDC28A-203ENST00000617445 LY9Q9HBG7 655 aa22.1■■□□□ 1.13
CCDC28A-203ENST00000617445 GCOM1H8Y6P7 765 aaPredicted RBP22.09■■□□□ 1.13
CCDC28A-203ENST00000617445 CYTH3O43739 400 aa22.09■■□□□ 1.13
CCDC28A-203ENST00000617445 POLR2MP0CAP2 368 aa22.09■■□□□ 1.13
CCDC28A-203ENST00000617445 NECTIN1Q15223 517 aa22.09■■□□□ 1.13
CCDC28A-203ENST00000617445 SLC35G1Q2M3R5 365 aa22.09■■□□□ 1.13
CCDC28A-203ENST00000617445 NBPF20Q3BBV1 942 aa22.09■■□□□ 1.13
CCDC28A-203ENST00000617445 C16orf59Q7L2K0 433 aa22.09■■□□□ 1.13
CCDC28A-203ENST00000617445 RPUSD2Q8IZ73 545 aaKnown RBP22.09■■□□□ 1.13
CCDC28A-203ENST00000617445 ZNF654Q8IZM8 581 aa22.09■■□□□ 1.13
CCDC28A-203ENST00000617445 EMID1Q96A84 441 aaPredicted RBP22.09■■□□□ 1.13
CCDC28A-203ENST00000617445 PDCD2LQ9BRP1 358 aa22.09■■□□□ 1.13
CCDC28A-203ENST00000617445 MTIF3Q9H2K0 278 aaKnown RBP22.09■■□□□ 1.13
CCDC28A-203ENST00000617445 SEMA6BQ9H3T3 888 aa22.09■■□□□ 1.13
CCDC28A-203ENST00000617445 DDX41Q9UJV9 622 aaKnown RBP22.09■■□□□ 1.13
CCDC28A-203ENST00000617445 SLC27A2O14975 620 aa22.08■■□□□ 1.13
CCDC28A-203ENST00000617445 PRC1O43663 620 aa22.08■■□□□ 1.13
CCDC28A-203ENST00000617445 CASTP20810 708 aaKnown RBP22.08■■□□□ 1.13
CCDC28A-203ENST00000617445 LIFRP42702 1097 aa22.08■■□□□ 1.13
CCDC28A-203ENST00000617445 LY6KQ17RY6 165 aa22.08■■□□□ 1.13
CCDC28A-203ENST00000617445 RASIP1Q5U651 963 aa22.08■■□□□ 1.13
CCDC28A-203ENST00000617445 RNF20Q5VTR2 975 aa22.08■■□□□ 1.13
CCDC28A-203ENST00000617445 CREB3L3Q68CJ9 461 aa22.08■■□□□ 1.13
CCDC28A-203ENST00000617445 ZNF365Q70YC5 407 aa22.08■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms