RNA–Protein interactions for RNA: ENST00000596163.5

SHKBP1-212, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 785 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-212ENST00000596163 Q9Y3F1 56 aa19.91■□□□□ 0.78
SHKBP1-212ENST00000596163 hCG_1642624A0A1W2PR95 340 aa19.9■□□□□ 0.78
SHKBP1-212ENST00000596163 RBM47A0AV96 593 aaKnown RBP19.9■□□□□ 0.78
SHKBP1-212ENST00000596163 PIK3CDO00329 1044 aa19.9■□□□□ 0.78
SHKBP1-212ENST00000596163 EIF3JO75822 258 aaKnown RBP19.9■□□□□ 0.78
SHKBP1-212ENST00000596163 PGK1P00558 417 aa19.9■□□□□ 0.78
SHKBP1-212ENST00000596163 NR3C2P08235 984 aa19.9■□□□□ 0.78
SHKBP1-212ENST00000596163 COL6A1P12109 1028 aa19.9■□□□□ 0.78
SHKBP1-212ENST00000596163 EIF2AK2P19525 551 aaKnown RBP19.9■□□□□ 0.78
SHKBP1-212ENST00000596163 GJA9P57773 515 aa19.9■□□□□ 0.78
SHKBP1-212ENST00000596163 PPP1R18Q6NYC8 613 aa19.9■□□□□ 0.78
SHKBP1-212ENST00000596163 FCHSD1Q86WN1 690 aa19.9■□□□□ 0.78
SHKBP1-212ENST00000596163 PCSK9Q8NBP7 692 aaKnown RBP19.9■□□□□ 0.78
SHKBP1-212ENST00000596163 SCFD2Q8WU76 684 aa19.9■□□□□ 0.78
SHKBP1-212ENST00000596163 TSEN34Q9BSV6 310 aaKnown RBP19.9■□□□□ 0.78
SHKBP1-212ENST00000596163 WDR11Q9BZH6 1224 aa19.9■□□□□ 0.78
SHKBP1-212ENST00000596163 SENP6Q9GZR1 1112 aaPredicted RBP19.9■□□□□ 0.78
SHKBP1-212ENST00000596163 GLT8D2Q9H1C3 349 aa19.9■□□□□ 0.78
SHKBP1-212ENST00000596163 UPF2Q9HAU5 1272 aaKnown RBP19.9■□□□□ 0.78
SHKBP1-212ENST00000596163 SMCHD1A6NHR9 2005 aa19.89■□□□□ 0.77
SHKBP1-212ENST00000596163 CPLX1O14810 134 aa19.89■□□□□ 0.77
SHKBP1-212ENST00000596163 NKRFO15226 690 aaKnown RBP eCLIP19.89■□□□□ 0.77
SHKBP1-212ENST00000596163 PRPF3O43395 683 aaKnown RBP19.89■□□□□ 0.77
SHKBP1-212ENST00000596163 PDGFCQ9NRA1 345 aa19.89■□□□□ 0.77
SHKBP1-212ENST00000596163 NR2E3Q9Y5X4 410 aa19.89■□□□□ 0.77
SHKBP1-212ENST00000596163 DDX49Q9Y6V7 483 aaKnown RBP19.89■□□□□ 0.77
SHKBP1-212ENST00000596163 SYNRGQ9UMZ2 1314 aa19.88■□□□□ 0.77
SHKBP1-212ENST00000596163 ZEB2O60315 1214 aa19.88■□□□□ 0.77
SHKBP1-212ENST00000596163 ADAMTS4O75173 837 aa19.88■□□□□ 0.77
SHKBP1-212ENST00000596163 C6orf222P0C671 652 aaPredicted RBP19.88■□□□□ 0.77
SHKBP1-212ENST00000596163 IFNAR1P17181 557 aa19.88■□□□□ 0.77
SHKBP1-212ENST00000596163 SMPD1P17405 629 aa19.88■□□□□ 0.77
SHKBP1-212ENST00000596163 NAPAP54920 295 aa19.88■□□□□ 0.77
SHKBP1-212ENST00000596163 CCT2P78371 535 aaKnown RBP19.88■□□□□ 0.77
SHKBP1-212ENST00000596163 TTLL4Q14679 1199 aa19.88■□□□□ 0.77
SHKBP1-212ENST00000596163 DUSP28Q4G0W2 176 aa19.88■□□□□ 0.77
SHKBP1-212ENST00000596163 KLHDC9Q8NEP7 349 aa19.88■□□□□ 0.77
SHKBP1-212ENST00000596163 CCDC12Q8WUD4 166 aaPredicted RBP19.88■□□□□ 0.77
SHKBP1-212ENST00000596163 PDCD2LQ9BRP1 358 aa19.88■□□□□ 0.77
SHKBP1-212ENST00000596163 UPF3AQ9H1J1 476 aaKnown RBP19.88■□□□□ 0.77
SHKBP1-212ENST00000596163 GNEQ9Y223 722 aaKnown RBP19.88■□□□□ 0.77
SHKBP1-212ENST00000596163 GTF3C3Q9Y5Q9 886 aa19.88■□□□□ 0.77
SHKBP1-212ENST00000596163 C11orf97A0A1B0GVM6 126 aaPredicted RBP19.87■□□□□ 0.77
SHKBP1-212ENST00000596163 MOXD2PA6NHM9 499 aa19.87■□□□□ 0.77
SHKBP1-212ENST00000596163 DYNC1LI2O43237 492 aaPredicted RBP19.87■□□□□ 0.77
SHKBP1-212ENST00000596163 EVI5O60447 810 aa19.87■□□□□ 0.77
SHKBP1-212ENST00000596163 MYCLP12524 364 aaPredicted RBP19.87■□□□□ 0.77
SHKBP1-212ENST00000596163 CST5P28325 142 aaPredicted RBP19.87■□□□□ 0.77
SHKBP1-212ENST00000596163 CCND2P30279 289 aa19.87■□□□□ 0.77
SHKBP1-212ENST00000596163 NEK4P51957 841 aa19.87■□□□□ 0.77
SHKBP1-212ENST00000596163 NKX3-2P78367 333 aa19.87■□□□□ 0.77
SHKBP1-212ENST00000596163 PGM5Q15124 567 aa19.87■□□□□ 0.77
SHKBP1-212ENST00000596163 PFKFB3Q16875 520 aaPredicted RBP19.87■□□□□ 0.77
SHKBP1-212ENST00000596163 GNASQ5JWF2 1037 aa19.87■□□□□ 0.77
SHKBP1-212ENST00000596163 WWC2Q6AWC2 1192 aa19.87■□□□□ 0.77
SHKBP1-212ENST00000596163 VSIG10LQ86VR7 867 aa19.87■□□□□ 0.77
SHKBP1-212ENST00000596163 TRIM22Q8IYM9 498 aa19.87■□□□□ 0.77
SHKBP1-212ENST00000596163 GPKOWQ92917 476 aaPredicted RBP eCLIP19.87■□□□□ 0.77
SHKBP1-212ENST00000596163 LENG1Q96BZ8 264 aaPredicted RBP19.87■□□□□ 0.77
SHKBP1-212ENST00000596163 RNF26Q9BY78 433 aaPredicted RBP19.87■□□□□ 0.77
SHKBP1-212ENST00000596163 BARHL2Q9NY43 387 aa19.87■□□□□ 0.77
SHKBP1-212ENST00000596163 PHF24Q9UPV7 400 aa19.87■□□□□ 0.77
SHKBP1-212ENST00000596163 BAZ2BQ9UIF8 2168 aaKnown RBP19.87■□□□□ 0.77
SHKBP1-212ENST00000596163 SPDYE3A6NKU9 549 aa19.86■□□□□ 0.77
SHKBP1-212ENST00000596163 MEIS2O14770 477 aa19.86■□□□□ 0.77
SHKBP1-212ENST00000596163 STAM2O75886 525 aa19.86■□□□□ 0.77
SHKBP1-212ENST00000596163 SCG2P13521 617 aa19.86■□□□□ 0.77
SHKBP1-212ENST00000596163 BRDTQ58F21 947 aaPredicted RBP19.86■□□□□ 0.77
SHKBP1-212ENST00000596163 XRRA1Q6P2D8 792 aa19.86■□□□□ 0.77
SHKBP1-212ENST00000596163 KCNV1Q6PIU1 500 aa19.86■□□□□ 0.77
SHKBP1-212ENST00000596163 USP17L6PQ6QN14 398 aa19.86■□□□□ 0.77
SHKBP1-212ENST00000596163 SEPT14Q6ZU15 432 aa19.86■□□□□ 0.77
SHKBP1-212ENST00000596163 TLK2Q86UE8 772 aa19.86■□□□□ 0.77
SHKBP1-212ENST00000596163 C22orf23Q9BZE7 217 aa19.86■□□□□ 0.77
SHKBP1-212ENST00000596163 SLKQ9H2G2 1235 aaPredicted RBP19.86■□□□□ 0.77
SHKBP1-212ENST00000596163 EHMT1Q9H9B1 1298 aa19.86■□□□□ 0.77
SHKBP1-212ENST00000596163 MYH6P13533 1939 aa19.86■□□□□ 0.77
SHKBP1-212ENST00000596163 ADCY6O43306 1168 aa19.85■□□□□ 0.77
SHKBP1-212ENST00000596163 CDKL5O76039 1030 aa19.85■□□□□ 0.77
SHKBP1-212ENST00000596163 TXNP10599 105 aaKnown RBP19.85■□□□□ 0.77
SHKBP1-212ENST00000596163 ADCY7P51828 1080 aa19.85■□□□□ 0.77
SHKBP1-212ENST00000596163 AK2P54819 239 aa19.85■□□□□ 0.77
SHKBP1-212ENST00000596163 SSRP1Q08945 709 aaKnown RBP19.85■□□□□ 0.77
SHKBP1-212ENST00000596163 STK3Q13188 491 aa19.85■□□□□ 0.77
SHKBP1-212ENST00000596163 NTRK3Q16288 839 aa19.85■□□□□ 0.77
SHKBP1-212ENST00000596163 KCNA10Q16322 511 aa19.85■□□□□ 0.77
SHKBP1-212ENST00000596163 LARP6Q9BRS8 491 aaKnown RBP19.85■□□□□ 0.77
SHKBP1-212ENST00000596163 SLC26A6Q9BXS9 759 aa19.85■□□□□ 0.77
SHKBP1-212ENST00000596163 NCOA5Q9HCD5 579 aaKnown RBP19.85■□□□□ 0.77
SHKBP1-212ENST00000596163 RIC8AQ9NPQ8 531 aa19.85■□□□□ 0.77
SHKBP1-212ENST00000596163 SMCO2A6NFE2 343 aa19.84■□□□□ 0.77
SHKBP1-212ENST00000596163 STXBP3O00186 592 aa19.84■□□□□ 0.77
SHKBP1-212ENST00000596163 FOSP01100 380 aaPredicted RBP19.84■□□□□ 0.77
SHKBP1-212ENST00000596163 ACLYP53396 1101 aa19.84■□□□□ 0.77
SHKBP1-212ENST00000596163 FSCN1Q16658 493 aaKnown RBP19.84■□□□□ 0.77
SHKBP1-212ENST00000596163 MCTP2Q6DN12 878 aa19.84■□□□□ 0.77
SHKBP1-212ENST00000596163 PHKBQ93100 1093 aa19.84■□□□□ 0.77
SHKBP1-212ENST00000596163 FERMT2Q96AC1 680 aa19.84■□□□□ 0.77
SHKBP1-212ENST00000596163 FRMPD4Q14CM0 1322 aa19.83■□□□□ 0.77
SHKBP1-212ENST00000596163 PFKFB2O60825 505 aa19.83■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms