RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 SMC3Q9UQE7 1217 aa13.64□□□□□ -0.23
LDLR-212ENST00000560467 DDX49Q9Y6V7 483 aaKnown RBP13.64□□□□□ -0.23
LDLR-212ENST00000560467 GREB1LQ9C091 1923 aaPredicted RBP13.63□□□□□ -0.23
LDLR-212ENST00000560467 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.63□□□□□ -0.23
LDLR-212ENST00000560467 PFKFB2O60825 505 aa13.63□□□□□ -0.23
LDLR-212ENST00000560467 CD2BP2O95400 341 aaKnown RBP13.63□□□□□ -0.23
LDLR-212ENST00000560467 TOP1P11387 765 aaKnown RBP13.63□□□□□ -0.23
LDLR-212ENST00000560467 RCAN1P53805 252 aa13.63□□□□□ -0.23
LDLR-212ENST00000560467 EVCP57679 992 aa13.63□□□□□ -0.23
LDLR-212ENST00000560467 ANTXR2P58335 489 aa13.63□□□□□ -0.23
LDLR-212ENST00000560467 CHST13Q8NET6 341 aa13.63□□□□□ -0.23
LDLR-212ENST00000560467 SYMPKQ92797 1274 aaKnown RBP13.63□□□□□ -0.23
LDLR-212ENST00000560467 LARP6Q9BRS8 491 aaKnown RBP13.63□□□□□ -0.23
LDLR-212ENST00000560467 LLPHQ9BRT6 129 aaKnown RBP13.63□□□□□ -0.23
LDLR-212ENST00000560467 LY9Q9HBG7 655 aa13.63□□□□□ -0.23
LDLR-212ENST00000560467 MTMR4Q9NYA4 1195 aa13.63□□□□□ -0.23
LDLR-212ENST00000560467 FBXO40Q9UH90 709 aa13.63□□□□□ -0.23
LDLR-212ENST00000560467 FEM1BQ9UK73 627 aa13.63□□□□□ -0.23
LDLR-212ENST00000560467 ISY1Q9ULR0 285 aaKnown RBP13.63□□□□□ -0.23
LDLR-212ENST00000560467 ASTN1O14525 1302 aa13.63□□□□□ -0.23
LDLR-212ENST00000560467 MYH8P13535 1937 aa13.62□□□□□ -0.23
LDLR-212ENST00000560467 MUC3AQ02505 3323 aa13.62□□□□□ -0.23
LDLR-212ENST00000560467 GOLGA8AA7E2F4 631 aa13.62□□□□□ -0.23
LDLR-212ENST00000560467 TTLL1O95922 423 aa13.62□□□□□ -0.23
LDLR-212ENST00000560467 PDCP20941 246 aa13.62□□□□□ -0.23
LDLR-212ENST00000560467 PDIA3P30101 505 aaKnown RBP13.62□□□□□ -0.23
LDLR-212ENST00000560467 GNAQP50148 359 aa13.62□□□□□ -0.23
LDLR-212ENST00000560467 AKAP17AQ02040 695 aaKnown RBP13.62□□□□□ -0.23
LDLR-212ENST00000560467 ME3Q16798 604 aa13.62□□□□□ -0.23
LDLR-212ENST00000560467 SLFN13Q68D06 897 aa13.62□□□□□ -0.23
LDLR-212ENST00000560467 PSRC1Q6PGN9 363 aaPredicted RBP13.62□□□□□ -0.23
LDLR-212ENST00000560467 CCDC174Q6PII3 467 aa13.62□□□□□ -0.23
LDLR-212ENST00000560467 CXCL17Q6UXB2 119 aa13.62□□□□□ -0.23
LDLR-212ENST00000560467 TMEM199Q8N511 208 aa13.62□□□□□ -0.23
LDLR-212ENST00000560467 ENAHQ8N8S7 591 aaPredicted RBP13.62□□□□□ -0.23
LDLR-212ENST00000560467 FAM184AQ8NB25 1140 aa13.62□□□□□ -0.23
LDLR-212ENST00000560467 ANKS1AQ92625 1134 aa13.62□□□□□ -0.23
LDLR-212ENST00000560467 MKL1Q969V6 931 aa13.62□□□□□ -0.23
LDLR-212ENST00000560467 RBM28Q9NW13 759 aaKnown RBP13.62□□□□□ -0.23
LDLR-212ENST00000560467 CXXC1Q9P0U4 656 aaPredicted RBP13.62□□□□□ -0.23
LDLR-212ENST00000560467 UMODL1Q5DID0 1318 aa13.62□□□□□ -0.23
LDLR-212ENST00000560467 ZNFX1Q9P2E3 1918 aaKnown RBP13.61□□□□□ -0.23
LDLR-212ENST00000560467 SOWAHBA6NEL2 793 aa13.61□□□□□ -0.23
LDLR-212ENST00000560467 TMEM232C9JQI7 657 aa13.61□□□□□ -0.23
LDLR-212ENST00000560467 TLR3O15455 904 aaKnown RBP13.61□□□□□ -0.23
LDLR-212ENST00000560467 DDAH1O94760 285 aa13.61□□□□□ -0.23
LDLR-212ENST00000560467 CD4P01730 458 aa13.61□□□□□ -0.23
LDLR-212ENST00000560467 BMP3P12645 472 aa13.61□□□□□ -0.23
LDLR-212ENST00000560467 OAZ1P54368 228 aa13.61□□□□□ -0.23
LDLR-212ENST00000560467 CCT2P78371 535 aaKnown RBP13.61□□□□□ -0.23
LDLR-212ENST00000560467 HMGN5P82970 282 aaKnown RBP13.61□□□□□ -0.23
LDLR-212ENST00000560467 CUL4AQ13619 759 aa13.61□□□□□ -0.23
LDLR-212ENST00000560467 ADGRE1Q14246 886 aa13.61□□□□□ -0.23
LDLR-212ENST00000560467 RTN1Q16799 776 aa13.61□□□□□ -0.23
LDLR-212ENST00000560467 APOA5Q6Q788 366 aa13.61□□□□□ -0.23
LDLR-212ENST00000560467 MICU3Q86XE3 530 aa13.61□□□□□ -0.23
LDLR-212ENST00000560467 CCDC83Q8IWF9 413 aa13.61□□□□□ -0.23
LDLR-212ENST00000560467 TRIM22Q8IYM9 498 aa13.61□□□□□ -0.23
LDLR-212ENST00000560467 ZNF654Q8IZM8 581 aa13.61□□□□□ -0.23
LDLR-212ENST00000560467 FAM133AQ8N9E0 248 aa13.61□□□□□ -0.23
LDLR-212ENST00000560467 GMCL1P1Q8NEA9 526 aa13.61□□□□□ -0.23
LDLR-212ENST00000560467 AGBL1Q96MI9 1066 aa13.61□□□□□ -0.23
LDLR-212ENST00000560467 GAS2L1Q99501 681 aaPredicted RBP13.61□□□□□ -0.23
LDLR-212ENST00000560467 ACAD9Q9H845 621 aa13.61□□□□□ -0.23
LDLR-212ENST00000560467 A1CFQ9NQ94 594 aaKnown RBP13.61□□□□□ -0.23
LDLR-212ENST00000560467 RNF146Q9NTX7 359 aa13.61□□□□□ -0.23
LDLR-212ENST00000560467 FOXD4L1Q9NU39 408 aa13.61□□□□□ -0.23
LDLR-212ENST00000560467 PLXNA1Q9UIW2 1896 aa13.61□□□□□ -0.23
LDLR-212ENST00000560467 PLIN4Q96Q06 1357 aa13.6□□□□□ -0.23
LDLR-212ENST00000560467 CHD9Q3L8U1 2897 aa13.6□□□□□ -0.23
LDLR-212ENST00000560467 TNFRSF10AO00220 468 aa13.6□□□□□ -0.23
LDLR-212ENST00000560467 SNAP25P60880 206 aa13.6□□□□□ -0.23
LDLR-212ENST00000560467 TNFAIP2Q03169 654 aa13.6□□□□□ -0.23
LDLR-212ENST00000560467 SEC23AQ15436 765 aa13.6□□□□□ -0.23
LDLR-212ENST00000560467 RASGRP2Q7LDG7 609 aa13.6□□□□□ -0.23
LDLR-212ENST00000560467 TLK2Q86UE8 772 aa13.6□□□□□ -0.23
LDLR-212ENST00000560467 NECAB1Q8N987 351 aa13.6□□□□□ -0.23
LDLR-212ENST00000560467 FANCBQ8NB91 859 aa13.6□□□□□ -0.23
LDLR-212ENST00000560467 PNMA1Q8ND90 353 aa13.6□□□□□ -0.23
LDLR-212ENST00000560467 HERVK_113Q902F9 699 aa13.6□□□□□ -0.23
LDLR-212ENST00000560467 WASF1Q92558 559 aa13.6□□□□□ -0.23
LDLR-212ENST00000560467 GTF3C6Q969F1 213 aa13.6□□□□□ -0.23
LDLR-212ENST00000560467 MAP3K14Q99558 947 aa13.6□□□□□ -0.23
LDLR-212ENST00000560467 LZTS2Q9BRK4 669 aa13.6□□□□□ -0.23
LDLR-212ENST00000560467 NKX2-4Q9H2Z4 354 aa13.6□□□□□ -0.23
LDLR-212ENST00000560467 IL23AQ9NPF7 189 aa13.6□□□□□ -0.23
LDLR-212ENST00000560467 SYNPO2Q9UMS6 1093 aa13.6□□□□□ -0.23
LDLR-212ENST00000560467 GNEQ9Y223 722 aaKnown RBP13.6□□□□□ -0.23
LDLR-212ENST00000560467 YBX2Q9Y2T7 364 aaKnown RBP13.6□□□□□ -0.23
LDLR-212ENST00000560467 ZNF536O15090 1300 aa13.6□□□□□ -0.23
LDLR-212ENST00000560467 SMPD1P17405 629 aa13.59□□□□□ -0.23
LDLR-212ENST00000560467 NKX3-2P78367 333 aa13.59□□□□□ -0.23
LDLR-212ENST00000560467 NUCB2P80303 420 aa13.59□□□□□ -0.23
LDLR-212ENST00000560467 IKQ13123 557 aaPredicted RBP13.59□□□□□ -0.23
LDLR-212ENST00000560467 CCDC85BQ15834 202 aaPredicted RBP13.59□□□□□ -0.23
LDLR-212ENST00000560467 FSCN1Q16658 493 aaKnown RBP13.59□□□□□ -0.23
LDLR-212ENST00000560467 TMEM63BQ5T3F8 832 aa13.59□□□□□ -0.23
LDLR-212ENST00000560467 FBXO16Q8IX29 292 aaPredicted RBP13.59□□□□□ -0.23
LDLR-212ENST00000560467 SLC43A3Q8NBI5 491 aa13.59□□□□□ -0.23
LDLR-212ENST00000560467 TMEM47Q9BQJ4 181 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms