RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 TMEM199Q8N511 208 aa9.95□□□□□ -0.82
USP28-215ENST00000545608 EXOC6Q8TAG9 804 aa9.95□□□□□ -0.82
USP28-215ENST00000545608 YTHDC1Q96MU7 727 aaKnown RBP9.95□□□□□ -0.82
USP28-215ENST00000545608 DCBLD2Q96PD2 775 aa9.95□□□□□ -0.82
USP28-215ENST00000545608 ZKSCAN3Q9BRR0 538 aa9.95□□□□□ -0.82
USP28-215ENST00000545608 OSBPL3Q9H4L5 887 aa9.95□□□□□ -0.82
USP28-215ENST00000545608 VTA1Q9NP79 307 aa9.95□□□□□ -0.82
USP28-215ENST00000545608 NEDD4P46934 1319 aa9.95□□□□□ -0.82
USP28-215ENST00000545608 UMODL1Q5DID0 1318 aa9.95□□□□□ -0.82
USP28-215ENST00000545608 TMEM265A0A087WTH1 108 aa9.94□□□□□ -0.82
USP28-215ENST00000545608 RBM47A0AV96 593 aaKnown RBP9.94□□□□□ -0.82
USP28-215ENST00000545608 GRXCR1A8MXD5 290 aa9.94□□□□□ -0.82
USP28-215ENST00000545608 GPR37O15354 613 aa9.94□□□□□ -0.82
USP28-215ENST00000545608 ZEB2O60315 1214 aa9.94□□□□□ -0.82
USP28-215ENST00000545608 GOLGA8HP0CJ92 632 aa9.94□□□□□ -0.82
USP28-215ENST00000545608 PCP11498 1178 aaKnown RBP9.94□□□□□ -0.82
USP28-215ENST00000545608 DNAJB2P25686 324 aa9.94□□□□□ -0.82
USP28-215ENST00000545608 CALML3P27482 149 aa9.94□□□□□ -0.82
USP28-215ENST00000545608 NUCB1Q02818 461 aa9.94□□□□□ -0.82
USP28-215ENST00000545608 AAMPQ13685 434 aa9.94□□□□□ -0.82
USP28-215ENST00000545608 GRIN2CQ14957 1233 aa9.94□□□□□ -0.82
USP28-215ENST00000545608 DUSP28Q4G0W2 176 aa9.94□□□□□ -0.82
USP28-215ENST00000545608 RASIP1Q5U651 963 aa9.94□□□□□ -0.82
USP28-215ENST00000545608 CWC27Q6UX04 472 aaKnown RBP9.94□□□□□ -0.82
USP28-215ENST00000545608 SLC30A10Q6XR72 485 aa9.94□□□□□ -0.82
USP28-215ENST00000545608 RNF207Q6ZRF8 634 aa9.94□□□□□ -0.82
USP28-215ENST00000545608 MAFAQ8NHW3 353 aaPredicted RBP9.94□□□□□ -0.82
USP28-215ENST00000545608 COL25A1Q9BXS0 654 aaPredicted RBP9.94□□□□□ -0.82
USP28-215ENST00000545608 WDR11Q9BZH6 1224 aa9.94□□□□□ -0.82
USP28-215ENST00000545608 UBA5Q9GZZ9 404 aa9.94□□□□□ -0.82
USP28-215ENST00000545608 TRPV6Q9H1D0 765 aa9.94□□□□□ -0.82
USP28-215ENST00000545608 CPVLQ9H3G5 476 aa9.94□□□□□ -0.82
USP28-215ENST00000545608 RNF41Q9H4P4 317 aaPredicted RBP9.94□□□□□ -0.82
USP28-215ENST00000545608 ADD3Q9UEY8 706 aaKnown RBP9.94□□□□□ -0.82
USP28-215ENST00000545608 LOC102724159A0A0B4J2E5 919 aa9.93□□□□□ -0.82
USP28-215ENST00000545608 ZNF213O14771 459 aa9.93□□□□□ -0.82
USP28-215ENST00000545608 B4GALT4O60513 344 aa9.93□□□□□ -0.82
USP28-215ENST00000545608 FOSL2P15408 326 aa9.93□□□□□ -0.82
USP28-215ENST00000545608 PBX2P40425 430 aa9.93□□□□□ -0.82
USP28-215ENST00000545608 MFAP1P55081 439 aaKnown RBP9.93□□□□□ -0.82
USP28-215ENST00000545608 CCL23P55773 120 aa9.93□□□□□ -0.82
USP28-215ENST00000545608 RPS6P62753 249 aaKnown RBP9.93□□□□□ -0.82
USP28-215ENST00000545608 PWP2Q15269 919 aaKnown RBP9.93□□□□□ -0.82
USP28-215ENST00000545608 DGKHQ86XP1 1220 aa9.93□□□□□ -0.82
USP28-215ENST00000545608 IL27Q8NEV9 243 aa9.93□□□□□ -0.82
USP28-215ENST00000545608 TBC1D5Q92609 795 aa9.93□□□□□ -0.82
USP28-215ENST00000545608 ESR2Q92731 530 aa9.93□□□□□ -0.82
USP28-215ENST00000545608 TIFAQ96CG3 184 aa9.93□□□□□ -0.82
USP28-215ENST00000545608 PBX4Q9BYU1 374 aa9.93□□□□□ -0.82
USP28-215ENST00000545608 HIPK3Q9H422 1215 aa9.93□□□□□ -0.82
USP28-215ENST00000545608 ZNF576Q9H609 170 aa9.93□□□□□ -0.82
USP28-215ENST00000545608 IL23AQ9NPF7 189 aa9.93□□□□□ -0.82
USP28-215ENST00000545608 WDR19Q8NEZ3 1342 aa9.92□□□□□ -0.82
USP28-215ENST00000545608 B4E1Z4 1266 aa9.92□□□□□ -0.82
USP28-215ENST00000545608 KDM4AO75164 1064 aa9.92□□□□□ -0.82
USP28-215ENST00000545608 GABBR2O75899 941 aa9.92□□□□□ -0.82
USP28-215ENST00000545608 MYL3P08590 195 aa9.92□□□□□ -0.82
USP28-215ENST00000545608 EDNRBP24530 442 aa9.92□□□□□ -0.82
USP28-215ENST00000545608 USH1GQ495M9 461 aa9.92□□□□□ -0.82
USP28-215ENST00000545608 GPATCH4Q5T3I0 446 aaKnown RBP9.92□□□□□ -0.82
USP28-215ENST00000545608 PSRC1Q6PGN9 363 aaPredicted RBP9.92□□□□□ -0.82
USP28-215ENST00000545608 OR6J1Q8NGC5 347 aa9.92□□□□□ -0.82
USP28-215ENST00000545608 PPP1R13LQ8WUF5 828 aa9.92□□□□□ -0.82
USP28-215ENST00000545608 HERVK_113Q902F9 699 aa9.92□□□□□ -0.82
USP28-215ENST00000545608 ANKS1AQ92625 1134 aa9.92□□□□□ -0.82
USP28-215ENST00000545608 COPS5Q92905 334 aa9.92□□□□□ -0.82
USP28-215ENST00000545608 VWCEQ96DN2 955 aa9.92□□□□□ -0.82
USP28-215ENST00000545608 NOC4LQ9BVI4 516 aaKnown RBP9.92□□□□□ -0.82
USP28-215ENST00000545608 SEZ6LQ9BYH1 1024 aa9.92□□□□□ -0.82
USP28-215ENST00000545608 WNT8AQ9H1J5 351 aa9.92□□□□□ -0.82
USP28-215ENST00000545608 DIAPH3Q9NSV4 1193 aa9.92□□□□□ -0.82
USP28-215ENST00000545608 CXXC1Q9P0U4 656 aaPredicted RBP9.92□□□□□ -0.82
USP28-215ENST00000545608 ZSWIM5Q9P217 1185 aa9.92□□□□□ -0.82
USP28-215ENST00000545608 PNMA2Q9UL42 364 aa9.92□□□□□ -0.82
USP28-215ENST00000545608 FGBP02675 491 aa9.91□□□□□ -0.82
USP28-215ENST00000545608 PURAQ00577 322 aaKnown RBP9.91□□□□□ -0.82
USP28-215ENST00000545608 HIC1Q14526 733 aa9.91□□□□□ -0.82
USP28-215ENST00000545608 TMEM92Q6UXU6 159 aa9.91□□□□□ -0.82
USP28-215ENST00000545608 OTOP2Q7RTS6 562 aa9.91□□□□□ -0.82
USP28-215ENST00000545608 IQCA1Q86XH1 822 aa9.91□□□□□ -0.82
USP28-215ENST00000545608 PNMA1Q8ND90 353 aa9.91□□□□□ -0.82
USP28-215ENST00000545608 DNERQ8NFT8 737 aa9.91□□□□□ -0.82
USP28-215ENST00000545608 SLC39A7Q92504 469 aa9.91□□□□□ -0.82
USP28-215ENST00000545608 DDX12PQ92771 950 aa9.91□□□□□ -0.82
USP28-215ENST00000545608 SCLYQ96I15 445 aa9.91□□□□□ -0.82
USP28-215ENST00000545608 TAAR1Q96RJ0 339 aa9.91□□□□□ -0.82
USP28-215ENST00000545608 ZSCAN10Q96SZ4 725 aaPredicted RBP9.91□□□□□ -0.82
USP28-215ENST00000545608 DSCC1Q9BVC3 393 aa9.91□□□□□ -0.82
USP28-215ENST00000545608 IL25Q9H293 177 aa9.91□□□□□ -0.82
USP28-215ENST00000545608 ALDH8A1Q9H2A2 487 aaPredicted RBP9.91□□□□□ -0.82
USP28-215ENST00000545608 TRMT13Q9NUP7 481 aaKnown RBP9.91□□□□□ -0.82
USP28-215ENST00000545608 POLR3EQ9NVU0 708 aa9.91□□□□□ -0.82
USP28-215ENST00000545608 LCTP09848 1927 aa9.9□□□□□ -0.82
USP28-215ENST00000545608 ARIH2O95376 493 aa9.9□□□□□ -0.82
USP28-215ENST00000545608 TXNP10599 105 aaKnown RBP9.9□□□□□ -0.82
USP28-215ENST00000545608 CYP2C9P11712 490 aa9.9□□□□□ -0.82
USP28-215ENST00000545608 CPT1AP50416 773 aa9.9□□□□□ -0.82
USP28-215ENST00000545608 PPP2R5BQ15173 497 aa9.9□□□□□ -0.82
USP28-215ENST00000545608 CDC37Q16543 378 aaPredicted RBP9.9□□□□□ -0.82
USP28-215ENST00000545608 NBPF20Q3BBV1 942 aa9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms