RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 ZNF658Q5TYW1 1059 aaPredicted RBP10.63□□□□□ -0.71
CUX1-206ENST00000437600 CABP7Q86V35 215 aa10.63□□□□□ -0.71
CUX1-206ENST00000437600 ELOA2Q8IYF1 753 aaPredicted RBP10.63□□□□□ -0.71
CUX1-206ENST00000437600 UBXN4Q92575 508 aa10.63□□□□□ -0.71
CUX1-206ENST00000437600 KANSL2Q9H9L4 492 aa10.63□□□□□ -0.71
CUX1-206ENST00000437600 L2HGDHQ9H9P8 463 aa10.63□□□□□ -0.71
CUX1-206ENST00000437600 RNF181Q9P0P0 153 aa10.63□□□□□ -0.71
CUX1-206ENST00000437600 USP17L15C9J2P7 530 aa10.62□□□□□ -0.71
CUX1-206ENST00000437600 USP17L10C9JJH3 530 aa10.62□□□□□ -0.71
CUX1-206ENST00000437600 USP17L13C9JLJ4 530 aa10.62□□□□□ -0.71
CUX1-206ENST00000437600 USP17L11C9JVI0 530 aa10.62□□□□□ -0.71
CUX1-206ENST00000437600 USP17L18D6R9N7 530 aa10.62□□□□□ -0.71
CUX1-206ENST00000437600 USP17L22D6RA61 530 aa10.62□□□□□ -0.71
CUX1-206ENST00000437600 USP17L17D6RBQ6 530 aa10.62□□□□□ -0.71
CUX1-206ENST00000437600 USP17L19D6RCP7 530 aa10.62□□□□□ -0.71
CUX1-206ENST00000437600 USP17L20D6RJB6 530 aa10.62□□□□□ -0.71
CUX1-206ENST00000437600 IDEP14735 1019 aa10.62□□□□□ -0.71
CUX1-206ENST00000437600 LONP1P36776 959 aaKnown RBP10.62□□□□□ -0.71
CUX1-206ENST00000437600 TRAPPC10P48553 1259 aa10.62□□□□□ -0.71
CUX1-206ENST00000437600 GMPSP49915 693 aaPredicted RBP10.62□□□□□ -0.71
CUX1-206ENST00000437600 ERVK-24P63145 666 aa10.62□□□□□ -0.71
CUX1-206ENST00000437600 CACNB1Q02641 598 aaPredicted RBP10.62□□□□□ -0.71
CUX1-206ENST00000437600 PDE4DQ08499 809 aa10.62□□□□□ -0.71
CUX1-206ENST00000437600 USP17L24Q0WX57 530 aa10.62□□□□□ -0.71
CUX1-206ENST00000437600 ZNF569Q5MCW4 686 aa10.62□□□□□ -0.71
CUX1-206ENST00000437600 TEX35Q5T0J7 233 aa10.62□□□□□ -0.71
CUX1-206ENST00000437600 USP17L6PQ6QN14 398 aa10.62□□□□□ -0.71
CUX1-206ENST00000437600 DLK2Q6UY11 383 aa10.62□□□□□ -0.71
CUX1-206ENST00000437600 SLC30A10Q6XR72 485 aa10.62□□□□□ -0.71
CUX1-206ENST00000437600 OGFOD1Q8N543 542 aa10.62□□□□□ -0.71
CUX1-206ENST00000437600 TRIM47Q96LD4 638 aa10.62□□□□□ -0.71
CUX1-206ENST00000437600 TBC1D7Q9P0N9 293 aa10.62□□□□□ -0.71
CUX1-206ENST00000437600 B4DLN1 442 aa10.62□□□□□ -0.71
CUX1-206ENST00000437600 EDIL3O43854 480 aa10.62□□□□□ -0.71
CUX1-206ENST00000437600 DDNO94850 711 aaPredicted RBP10.62□□□□□ -0.71
CUX1-206ENST00000437600 ASIC1P78348 528 aa10.62□□□□□ -0.71
CUX1-206ENST00000437600 NONOQ15233 471 aaKnown RBP eCLIP10.62□□□□□ -0.711e-6■■■□□ 18.5
CUX1-206ENST00000437600 ZYXQ15942 572 aaKnown RBP10.62□□□□□ -0.71
CUX1-206ENST00000437600 PRAMEF18Q5VWM3 479 aa10.62□□□□□ -0.71
CUX1-206ENST00000437600 GMLQ99445 158 aa10.62□□□□□ -0.71
CUX1-206ENST00000437600 ZMYND12Q9H0C1 365 aa10.62□□□□□ -0.71
CUX1-206ENST00000437600 AGPAT5Q9NUQ2 364 aa10.62□□□□□ -0.71
CUX1-206ENST00000437600 PI4KBQ9UBF8 816 aa10.62□□□□□ -0.71
CUX1-206ENST00000437600 ADGRG1Q9Y653 693 aa10.62□□□□□ -0.71
CUX1-206ENST00000437600 MYH8P13535 1937 aa10.61□□□□□ -0.71
CUX1-206ENST00000437600 TTC26A0AVF1 554 aa10.61□□□□□ -0.71
CUX1-206ENST00000437600 FAM170AA1A519 330 aa10.61□□□□□ -0.71
CUX1-206ENST00000437600 ENC1O14682 589 aa10.61□□□□□ -0.71
CUX1-206ENST00000437600 KLRC4O43908 158 aa10.61□□□□□ -0.71
CUX1-206ENST00000437600 GH2P01242 217 aa10.61□□□□□ -0.71
CUX1-206ENST00000437600 SSBP05455 408 aaKnown RBP eCLIP10.61□□□□□ -0.71
CUX1-206ENST00000437600 IKQ13123 557 aaPredicted RBP10.61□□□□□ -0.71
CUX1-206ENST00000437600 MCM6Q14566 821 aa10.61□□□□□ -0.71
CUX1-206ENST00000437600 ANKRD40Q6AI12 368 aa10.61□□□□□ -0.71
CUX1-206ENST00000437600 ADGRF4Q8IZF3 695 aa10.61□□□□□ -0.71
CUX1-206ENST00000437600 C6orf50Q9HD87 102 aa10.61□□□□□ -0.71
CUX1-206ENST00000437600 FZD1Q9UP38 647 aa10.61□□□□□ -0.71
CUX1-206ENST00000437600 FOCADQ5VW36 1801 aa10.61□□□□□ -0.71
CUX1-206ENST00000437600 PPP1R11O60927 126 aaPredicted RBP10.61□□□□□ -0.71
CUX1-206ENST00000437600 CLCN6P51797 869 aa10.61□□□□□ -0.71
CUX1-206ENST00000437600 ARL6IP4Q66PJ3 421 aaKnown RBP10.61□□□□□ -0.71
CUX1-206ENST00000437600 NEK8Q86SG6 692 aa10.61□□□□□ -0.71
CUX1-206ENST00000437600 MICALL2Q8IY33 904 aa10.61□□□□□ -0.71
CUX1-206ENST00000437600 REXO1Q8N1G1 1221 aaKnown RBP10.61□□□□□ -0.71
CUX1-206ENST00000437600 PCMTD1Q96MG8 357 aaPredicted RBP10.61□□□□□ -0.71
CUX1-206ENST00000437600 MMTAG2Q9BU76 263 aaKnown RBP10.61□□□□□ -0.71
CUX1-206ENST00000437600 SPZ1Q9BXG8 430 aa10.61□□□□□ -0.71
CUX1-206ENST00000437600 KCND1Q9NSA2 647 aa10.61□□□□□ -0.71
CUX1-206ENST00000437600 CEP350Q5VT06 3117 aa10.61□□□□□ -0.71
CUX1-206ENST00000437600 MFAP3LO75121 409 aa10.6□□□□□ -0.71
CUX1-206ENST00000437600 CCDC175P0C221 793 aa10.6□□□□□ -0.71
CUX1-206ENST00000437600 OR52Z1P0C646 297 aa10.6□□□□□ -0.71
CUX1-206ENST00000437600 PBX1P40424 430 aa10.6□□□□□ -0.71
CUX1-206ENST00000437600 SLC1A4P43007 532 aa10.6□□□□□ -0.71
CUX1-206ENST00000437600 DLGAP5Q15398 846 aa10.6□□□□□ -0.71
CUX1-206ENST00000437600 KCNK18Q7Z418 384 aa10.6□□□□□ -0.71
CUX1-206ENST00000437600 ADSSL1Q8N142 457 aa10.6□□□□□ -0.71
CUX1-206ENST00000437600 CCDC155Q8N6L0 562 aa10.6□□□□□ -0.71
CUX1-206ENST00000437600 CCDC148Q8NFR7 591 aa10.6□□□□□ -0.71
CUX1-206ENST00000437600 TMEM39BQ9GZU3 492 aa10.6□□□□□ -0.71
CUX1-206ENST00000437600 JMJD4Q9H9V9 463 aa10.6□□□□□ -0.71
CUX1-206ENST00000437600 RWDD2AQ9UIY3 292 aa10.6□□□□□ -0.71
CUX1-206ENST00000437600 SERPINA10Q9UK55 444 aa10.6□□□□□ -0.71
CUX1-206ENST00000437600 GUCA1BQ9UMX6 200 aa10.6□□□□□ -0.71
CUX1-206ENST00000437600 IGKV6D-41A0A0C4DH26 115 aa10.6□□□□□ -0.71
CUX1-206ENST00000437600 SPDYE2BA6NHP3 402 aa10.6□□□□□ -0.71
CUX1-206ENST00000437600 WNT10BO00744 389 aa10.6□□□□□ -0.71
CUX1-206ENST00000437600 SPDYE6P0CI01 402 aa10.6□□□□□ -0.71
CUX1-206ENST00000437600 ECE1P42892 770 aa10.6□□□□□ -0.71
CUX1-206ENST00000437600 ICA1Q05084 483 aa10.6□□□□□ -0.71
CUX1-206ENST00000437600 ZNF543Q08ER8 600 aa10.6□□□□□ -0.71
CUX1-206ENST00000437600 ECM1Q16610 540 aa10.6□□□□□ -0.71
CUX1-206ENST00000437600 CSGALNACT2Q8N6G5 542 aa10.6□□□□□ -0.71
CUX1-206ENST00000437600 SWAP70Q9UH65 585 aa10.6□□□□□ -0.71
CUX1-206ENST00000437600 KIF2AO00139 706 aaPredicted RBP10.6□□□□□ -0.71
CUX1-206ENST00000437600 MARCH6O60337 910 aa10.6□□□□□ -0.71
CUX1-206ENST00000437600 LMNB1P20700 586 aa10.6□□□□□ -0.71
CUX1-206ENST00000437600 SIAH1Q8IUQ4 282 aa10.6□□□□□ -0.71
CUX1-206ENST00000437600 ZNF397Q8NF99 534 aaPredicted RBP10.6□□□□□ -0.71
CUX1-206ENST00000437600 TRIM9Q9C026 710 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 275.6 ms