RNA–Protein interactions for RNA: ENST00000293748.9

SYNGAP1-201, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 4,556 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-201ENST00000293748 IQCDQ96DY2 449 aa13.09□□□□□ -0.31
SYNGAP1-201ENST00000293748 RRP36Q96EU6 259 aaKnown RBP13.09□□□□□ -0.31
SYNGAP1-201ENST00000293748 MRFAP1L1Q96HT8 127 aa13.09□□□□□ -0.31
SYNGAP1-201ENST00000293748 UTP11Q9Y3A2 253 aaKnown RBP13.09□□□□□ -0.31
SYNGAP1-201ENST00000293748 TRAF5O00463 557 aa13.09□□□□□ -0.31
SYNGAP1-201ENST00000293748 FAM13AO94988 1023 aa13.09□□□□□ -0.31
SYNGAP1-201ENST00000293748 SLC9C1Q4G0N8 1177 aa13.09□□□□□ -0.31
SYNGAP1-201ENST00000293748 CNNM4Q6P4Q7 775 aa13.09□□□□□ -0.31
SYNGAP1-201ENST00000293748 NAP1L4Q99733 375 aaKnown RBP13.09□□□□□ -0.31
SYNGAP1-201ENST00000293748 TMEM39BQ9GZU3 492 aa13.09□□□□□ -0.31
SYNGAP1-201ENST00000293748 ARHGEF10LQ9HCE6 1279 aa13.09□□□□□ -0.31
SYNGAP1-201ENST00000293748 VSIG1Q86XK7 387 aa13.09□□□□□ -0.31
SYNGAP1-201ENST00000293748 TXNDC16Q9P2K2 825 aa13.09□□□□□ -0.31
SYNGAP1-201ENST00000293748 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.09□□□□□ -0.31
SYNGAP1-201ENST00000293748 CFAP221Q4G0U5 840 aa13.08□□□□□ -0.31
SYNGAP1-201ENST00000293748 ARHGAP24Q8N264 748 aa13.08□□□□□ -0.31
SYNGAP1-201ENST00000293748 CSGALNACT2Q8N6G5 542 aa13.08□□□□□ -0.31
SYNGAP1-201ENST00000293748 RAB3IL1Q8TBN0 382 aa13.08□□□□□ -0.31
SYNGAP1-201ENST00000293748 XPO4Q9C0E2 1151 aaKnown RBP13.08□□□□□ -0.31
SYNGAP1-201ENST00000293748 VCXQ9H320 206 aa13.08□□□□□ -0.31
SYNGAP1-201ENST00000293748 VCX3BQ9H321 246 aa13.08□□□□□ -0.31
SYNGAP1-201ENST00000293748 IRS2Q9Y4H2 1338 aa13.08□□□□□ -0.31
SYNGAP1-201ENST00000293748 HIRAP54198 1017 aaPredicted RBP13.08□□□□□ -0.32
SYNGAP1-201ENST00000293748 CLUL1Q15846 466 aa13.08□□□□□ -0.32
SYNGAP1-201ENST00000293748 ERCC6LQ2NKX8 1250 aa13.08□□□□□ -0.32
SYNGAP1-201ENST00000293748 CCDC38Q502W7 563 aa13.08□□□□□ -0.32
SYNGAP1-201ENST00000293748 POLR2DO15514 142 aaKnown RBP13.08□□□□□ -0.32
SYNGAP1-201ENST00000293748 ASNSP08243 561 aa13.08□□□□□ -0.32
SYNGAP1-201ENST00000293748 POTEIP0CG38 1075 aa13.08□□□□□ -0.32
SYNGAP1-201ENST00000293748 GJC1P36383 396 aa13.08□□□□□ -0.32
SYNGAP1-201ENST00000293748 INF2Q27J81 1249 aa13.08□□□□□ -0.32
SYNGAP1-201ENST00000293748 SLC4A8Q2Y0W8 1093 aa13.08□□□□□ -0.32
SYNGAP1-201ENST00000293748 MIGA2Q7L4E1 593 aa13.08□□□□□ -0.32
SYNGAP1-201ENST00000293748 TRMT1LQ7Z2T5 733 aaKnown RBP13.08□□□□□ -0.32
SYNGAP1-201ENST00000293748 MSANTD4Q8NCY6 345 aa13.08□□□□□ -0.32
SYNGAP1-201ENST00000293748 PGAP2Q9UHJ9 254 aa13.08□□□□□ -0.32
SYNGAP1-201ENST00000293748 BRCA1P38398 1863 aaKnown RBP13.08□□□□□ -0.32
SYNGAP1-201ENST00000293748 UBE2Q2LH0YL09 131 aa13.08□□□□□ -0.32
SYNGAP1-201ENST00000293748 TAF1P21675 1872 aa13.08□□□□□ -0.32
SYNGAP1-201ENST00000293748 PRAMEF18Q5VWM3 479 aa13.08□□□□□ -0.32
SYNGAP1-201ENST00000293748 MIPOL1Q8TD10 442 aa13.08□□□□□ -0.32
SYNGAP1-201ENST00000293748 MED4Q9NPJ6 270 aa13.08□□□□□ -0.32
SYNGAP1-201ENST00000293748 PDE4DQ08499 809 aa13.07□□□□□ -0.32
SYNGAP1-201ENST00000293748 CERKLQ49MI3 558 aaPredicted RBP13.07□□□□□ -0.32
SYNGAP1-201ENST00000293748 ZMYM1Q5SVZ6 1142 aa13.07□□□□□ -0.32
SYNGAP1-201ENST00000293748 CCDC84Q86UT8 332 aaPredicted RBP13.07□□□□□ -0.32
SYNGAP1-201ENST00000293748 PI4K2BQ8TCG2 481 aa13.07□□□□□ -0.32
SYNGAP1-201ENST00000293748 TSC1Q92574 1164 aa13.07□□□□□ -0.32
SYNGAP1-201ENST00000293748 ATP8B1O43520 1251 aa13.07□□□□□ -0.32
SYNGAP1-201ENST00000293748 NBPF12Q5TAG4 269 aaPredicted RBP13.07□□□□□ -0.32
SYNGAP1-201ENST00000293748 DIS3L2Q8IYB7 885 aaKnown RBP13.07□□□□□ -0.32
SYNGAP1-201ENST00000293748 GOLGA5Q8TBA6 731 aa13.07□□□□□ -0.32
SYNGAP1-201ENST00000293748 PPP1R12CQ9BZL4 782 aa13.07□□□□□ -0.32
SYNGAP1-201ENST00000293748 TIAM2Q8IVF5 1701 aa13.07□□□□□ -0.32
SYNGAP1-201ENST00000293748 DDX23Q9BUQ8 820 aaKnown RBP13.07□□□□□ -0.32
SYNGAP1-201ENST00000293748 PABPN1LA6NDY0 278 aaKnown RBP13.06□□□□□ -0.32
SYNGAP1-201ENST00000293748 ZNF174Q15697 407 aa13.06□□□□□ -0.32
SYNGAP1-201ENST00000293748 APBB1IPQ7Z5R6 666 aaPredicted RBP13.06□□□□□ -0.32
SYNGAP1-201ENST00000293748 LCORLQ8N3X6 602 aa13.06□□□□□ -0.32
SYNGAP1-201ENST00000293748 PLCB1Q9NQ66 1216 aa13.06□□□□□ -0.32
SYNGAP1-201ENST00000293748 SAR1BQ9Y6B6 198 aa13.06□□□□□ -0.32
SYNGAP1-201ENST00000293748 SPOPO43791 374 aa13.06□□□□□ -0.32
SYNGAP1-201ENST00000293748 DMTNQ08495 405 aa13.06□□□□□ -0.32
SYNGAP1-201ENST00000293748 CFAP157Q5JU67 520 aa13.06□□□□□ -0.32
SYNGAP1-201ENST00000293748 SMARCC2Q8TAQ2 1214 aa13.06□□□□□ -0.32
SYNGAP1-201ENST00000293748 FLT1P17948 1338 aa13.06□□□□□ -0.32
SYNGAP1-201ENST00000293748 MANSC4A6NHS7 340 aaPredicted RBP13.06□□□□□ -0.32
SYNGAP1-201ENST00000293748 SPDYE3A6NKU9 549 aa13.06□□□□□ -0.32
SYNGAP1-201ENST00000293748 USP17L12C9JPN9 530 aa13.06□□□□□ -0.32
SYNGAP1-201ENST00000293748 USP17L21D6R901 530 aa13.06□□□□□ -0.32
SYNGAP1-201ENST00000293748 ALDH1A1P00352 501 aa13.06□□□□□ -0.32
SYNGAP1-201ENST00000293748 RXRAP19793 462 aa13.06□□□□□ -0.32
SYNGAP1-201ENST00000293748 NT5C2P49902 561 aa13.06□□□□□ -0.32
SYNGAP1-201ENST00000293748 USP14P54578 494 aa13.06□□□□□ -0.32
SYNGAP1-201ENST00000293748 POSTNQ15063 836 aa13.06□□□□□ -0.32
SYNGAP1-201ENST00000293748 PPP2R5BQ15173 497 aa13.06□□□□□ -0.32
SYNGAP1-201ENST00000293748 NUCKS1Q9H1E3 243 aaKnown RBP13.06□□□□□ -0.32
SYNGAP1-201ENST00000293748 POTECB2RU33 542 aa13.06□□□□□ -0.32
SYNGAP1-201ENST00000293748 EPB41P11171 864 aaKnown RBP13.06□□□□□ -0.32
SYNGAP1-201ENST00000293748 ERCC5P28715 1186 aaPredicted RBP13.06□□□□□ -0.32
SYNGAP1-201ENST00000293748 INHBEP58166 350 aa13.06□□□□□ -0.32
SYNGAP1-201ENST00000293748 KIF22Q14807 665 aa13.06□□□□□ -0.32
SYNGAP1-201ENST00000293748 ABCB5Q2M3G0 1257 aa13.06□□□□□ -0.32
SYNGAP1-201ENST00000293748 CEP85LQ5SZL2 805 aa13.06□□□□□ -0.32
SYNGAP1-201ENST00000293748 FCHSD1Q86WN1 690 aa13.06□□□□□ -0.32
SYNGAP1-201ENST00000293748 UBL4BQ8N7F7 174 aa13.06□□□□□ -0.32
SYNGAP1-201ENST00000293748 SDR42E1Q8WUS8 393 aa13.06□□□□□ -0.32
SYNGAP1-201ENST00000293748 MCUR1Q96AQ8 359 aa13.06□□□□□ -0.32
SYNGAP1-201ENST00000293748 MYCBPQ99417 103 aaPredicted RBP13.06□□□□□ -0.32
SYNGAP1-201ENST00000293748 KIAA1468Q9P260 1216 aa13.06□□□□□ -0.32
SYNGAP1-201ENST00000293748 PALD1Q9ULE6 856 aa13.06□□□□□ -0.32
SYNGAP1-201ENST00000293748 PSMC4P43686 418 aa13.05□□□□□ -0.32
SYNGAP1-201ENST00000293748 GRIK5Q16478 980 aa13.05□□□□□ -0.32
SYNGAP1-201ENST00000293748 ADALQ6DHV7 355 aa13.05□□□□□ -0.32
SYNGAP1-201ENST00000293748 ZNF365Q70YC5 407 aa13.05□□□□□ -0.32
SYNGAP1-201ENST00000293748 ERO1BQ86YB8 467 aa13.05□□□□□ -0.32
SYNGAP1-201ENST00000293748 SLF1Q9BQI6 1058 aa13.05□□□□□ -0.32
SYNGAP1-201ENST00000293748 ELP3Q9H9T3 547 aa13.05□□□□□ -0.32
SYNGAP1-201ENST00000293748 SSX2IPQ9Y2D8 614 aa13.05□□□□□ -0.32
SYNGAP1-201ENST00000293748 CETN3O15182 167 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms