RNA–Protein interactions for RNA: ENST00000589788.1

SDF2-208, Transcript of stromal cell derived factor 2, humanhuman

TSL 2

Gene SDF2, Length 1,342 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF2-208ENST00000589788 MMP19Q99542 508 aa12.14□□□□□ -0.47
SDF2-208ENST00000589788 LSG1Q9H089 658 aaKnown RBP12.14□□□□□ -0.47
SDF2-208ENST00000589788 RAVER2Q9HCJ3 691 aaKnown RBP12.14□□□□□ -0.47
SDF2-208ENST00000589788 ZNFX1Q9P2E3 1918 aaKnown RBP12.14□□□□□ -0.47
SDF2-208ENST00000589788 FRMPD2Q68DX3 1309 aaPredicted RBP12.14□□□□□ -0.47
SDF2-208ENST00000589788 ERICH2A1L162 156 aa12.13□□□□□ -0.47
SDF2-208ENST00000589788 HRO43593 1189 aa12.13□□□□□ -0.47
SDF2-208ENST00000589788 GJB1P08034 283 aa12.13□□□□□ -0.47
SDF2-208ENST00000589788 CFHP08603 1231 aa12.13□□□□□ -0.47
SDF2-208ENST00000589788 HOXC6P09630 235 aa12.13□□□□□ -0.47
SDF2-208ENST00000589788 PDHBP11177 359 aa12.13□□□□□ -0.47
SDF2-208ENST00000589788 SART3Q15020 963 aaKnown RBP12.13□□□□□ -0.47
SDF2-208ENST00000589788 CCL14Q16627 93 aa12.13□□□□□ -0.47
SDF2-208ENST00000589788 TMEM259Q4ZIN3 620 aa12.13□□□□□ -0.47
SDF2-208ENST00000589788 IFIT1BQ5T764 474 aaKnown RBP12.13□□□□□ -0.47
SDF2-208ENST00000589788 MFSD14CQ5VZR4 134 aa12.13□□□□□ -0.47
SDF2-208ENST00000589788 ENAHQ8N8S7 591 aaPredicted RBP12.13□□□□□ -0.47
SDF2-208ENST00000589788 ANKS1AQ92625 1134 aa12.13□□□□□ -0.47
SDF2-208ENST00000589788 HMX1Q9NP08 348 aaPredicted RBP12.13□□□□□ -0.47
SDF2-208ENST00000589788 PRR12Q9ULL5 1215 aa12.13□□□□□ -0.47
SDF2-208ENST00000589788 RPTORQ8N122 1335 aa12.13□□□□□ -0.47
SDF2-208ENST00000589788 SLC16A2P36021 539 aa12.12□□□□□ -0.47
SDF2-208ENST00000589788 ZNF543Q08ER8 600 aa12.12□□□□□ -0.47
SDF2-208ENST00000589788 TRIM32Q13049 653 aa12.12□□□□□ -0.47
SDF2-208ENST00000589788 GPATCH4Q5T3I0 446 aaKnown RBP12.12□□□□□ -0.47
SDF2-208ENST00000589788 SYDE2Q5VT97 1194 aa12.12□□□□□ -0.47
SDF2-208ENST00000589788 PRPF38BQ5VTL8 546 aaKnown RBP12.12□□□□□ -0.47
SDF2-208ENST00000589788 RNF20Q5VTR2 975 aa12.12□□□□□ -0.47
SDF2-208ENST00000589788 TTBK2Q6IQ55 1244 aa12.12□□□□□ -0.47
SDF2-208ENST00000589788 CCDC174Q6PII3 467 aa12.12□□□□□ -0.47
SDF2-208ENST00000589788 CYB5R4Q7L1T6 521 aa12.12□□□□□ -0.47
SDF2-208ENST00000589788 NPLOC4Q8TAT6 608 aa12.12□□□□□ -0.47
SDF2-208ENST00000589788 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.12□□□□□ -0.47
SDF2-208ENST00000589788 HOMER2Q9NSB8 354 aa12.12□□□□□ -0.47
SDF2-208ENST00000589788 FBXO40Q9UH90 709 aa12.12□□□□□ -0.47
SDF2-208ENST00000589788 RIPK3Q9Y572 518 aa12.12□□□□□ -0.47
SDF2-208ENST00000589788 IFIT3O14879 490 aaKnown RBP12.11□□□□□ -0.47
SDF2-208ENST00000589788 COBLO75128 1261 aa12.11□□□□□ -0.47
SDF2-208ENST00000589788 GJA8P48165 433 aa12.11□□□□□ -0.47
SDF2-208ENST00000589788 SNAP25P60880 206 aa12.11□□□□□ -0.47
SDF2-208ENST00000589788 CACNB2Q08289 660 aaPredicted RBP12.11□□□□□ -0.47
SDF2-208ENST00000589788 FUT2Q10981 343 aa12.11□□□□□ -0.47
SDF2-208ENST00000589788 BTNL9Q6UXG8 535 aa12.11□□□□□ -0.47
SDF2-208ENST00000589788 STOX1Q6ZVD7 989 aa12.11□□□□□ -0.47
SDF2-208ENST00000589788 CHST13Q8NET6 341 aa12.11□□□□□ -0.47
SDF2-208ENST00000589788 U2AF1L4Q8WU68 220 aaKnown RBP12.11□□□□□ -0.47
SDF2-208ENST00000589788 DDX11Q96FC9 970 aa12.11□□□□□ -0.47
SDF2-208ENST00000589788 DEFB118Q96PH6 123 aa12.11□□□□□ -0.47
SDF2-208ENST00000589788 PAK6Q9NQU5 681 aaPredicted RBP12.11□□□□□ -0.47
SDF2-208ENST00000589788 TAF6LQ9Y6J9 622 aa12.11□□□□□ -0.47
SDF2-208ENST00000589788 HTTP42858 3142 aa12.11□□□□□ -0.47
SDF2-208ENST00000589788 SLC27A2O14975 620 aa12.11□□□□□ -0.47
SDF2-208ENST00000589788 SGPL1O95470 568 aa12.11□□□□□ -0.47
SDF2-208ENST00000589788 TFRCP02786 760 aaKnown RBP12.11□□□□□ -0.47
SDF2-208ENST00000589788 PGK2P07205 417 aa12.11□□□□□ -0.47
SDF2-208ENST00000589788 PARP1P09874 1014 aaKnown RBP12.11□□□□□ -0.47
SDF2-208ENST00000589788 GOLGA8HP0CJ92 632 aa12.11□□□□□ -0.47
SDF2-208ENST00000589788 SNHG28P0DPA3 235 aa12.11□□□□□ -0.47
SDF2-208ENST00000589788 ALAS1P13196 640 aa12.11□□□□□ -0.47
SDF2-208ENST00000589788 WTAPQ15007 396 aa12.11□□□□□ -0.47
SDF2-208ENST00000589788 NECTIN1Q15223 517 aa12.11□□□□□ -0.47
SDF2-208ENST00000589788 SEC23AQ15436 765 aa12.11□□□□□ -0.47
SDF2-208ENST00000589788 TKFCQ3LXA3 575 aa12.11□□□□□ -0.47
SDF2-208ENST00000589788 ASPRV1Q53RT3 343 aa12.11□□□□□ -0.47
SDF2-208ENST00000589788 MAP3K21Q5TCX8 1036 aa12.11□□□□□ -0.47
SDF2-208ENST00000589788 OLFML2BQ68BL8 750 aa12.11□□□□□ -0.47
SDF2-208ENST00000589788 CREB3L3Q68CJ9 461 aa12.11□□□□□ -0.47
SDF2-208ENST00000589788 CHST3Q7LGC8 479 aa12.11□□□□□ -0.47
SDF2-208ENST00000589788 ANKRD35Q8N283 1001 aa12.11□□□□□ -0.47
SDF2-208ENST00000589788 AGBL1Q96MI9 1066 aa12.11□□□□□ -0.47
SDF2-208ENST00000589788 ACAD9Q9H845 621 aa12.11□□□□□ -0.47
SDF2-208ENST00000589788 FLRT1Q9NZU1 646 aa12.11□□□□□ -0.47
SDF2-208ENST00000589788 PLXNA1Q9UIW2 1896 aa12.11□□□□□ -0.47
SDF2-208ENST00000589788 CCPG1Q9ULG6 757 aa12.11□□□□□ -0.47
SDF2-208ENST00000589788 ZNF536O15090 1300 aa12.1□□□□□ -0.47
SDF2-208ENST00000589788 TRAK2O60296 914 aa12.1□□□□□ -0.47
SDF2-208ENST00000589788 ICAM1P05362 532 aa12.1□□□□□ -0.47
SDF2-208ENST00000589788 CAPN2P17655 700 aa12.1□□□□□ -0.47
SDF2-208ENST00000589788 CYP2C19P33261 490 aa12.1□□□□□ -0.47
SDF2-208ENST00000589788 MCM5P33992 734 aa12.1□□□□□ -0.47
SDF2-208ENST00000589788 TMEM67Q5HYA8 995 aa12.1□□□□□ -0.47
SDF2-208ENST00000589788 MB21D2Q8IYB1 491 aaPredicted RBP12.1□□□□□ -0.47
SDF2-208ENST00000589788 MAML3Q96JK9 1138 aa12.1□□□□□ -0.47
SDF2-208ENST00000589788 TRERF1Q96PN7 1200 aa12.1□□□□□ -0.47
SDF2-208ENST00000589788 RANBP17Q9H2T7 1088 aaKnown RBP12.1□□□□□ -0.47
SDF2-208ENST00000589788 RNF146Q9NTX7 359 aa12.1□□□□□ -0.47
SDF2-208ENST00000589788 PNMA2Q9UL42 364 aa12.1□□□□□ -0.47
SDF2-208ENST00000589788 DIS3Q9Y2L1 958 aaKnown RBP12.1□□□□□ -0.47
SDF2-208ENST00000589788 PRC1O43663 620 aa12.09□□□□□ -0.47
SDF2-208ENST00000589788 DHX16O60231 1041 aaKnown RBP12.09□□□□□ -0.47
SDF2-208ENST00000589788 CNGA1P29973 690 aa12.09□□□□□ -0.47
SDF2-208ENST00000589788 CCND3P30281 292 aaPredicted RBP12.09□□□□□ -0.47
SDF2-208ENST00000589788 SHISA4Q96DD7 197 aa12.09□□□□□ -0.47
SDF2-208ENST00000589788 UBA5Q9GZZ9 404 aa12.09□□□□□ -0.47
SDF2-208ENST00000589788 RNF40O75150 1001 aa12.08□□□□□ -0.48
SDF2-208ENST00000589788 FARP2O94887 1054 aaPredicted RBP12.08□□□□□ -0.48
SDF2-208ENST00000589788 REC8O95072 547 aa12.08□□□□□ -0.48
SDF2-208ENST00000589788 ANTXR2P58335 489 aa12.08□□□□□ -0.48
SDF2-208ENST00000589788 ZNF792Q3KQV3 632 aa12.08□□□□□ -0.48
SDF2-208ENST00000589788 NFXL1Q6ZNB6 911 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms