RNA–Protein interactions for RNA: ENST00000577880.5

SMCHD1-203, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,951 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-203ENST00000577880 TTC38Q5R3I4 469 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 RNF187Q5TA31 235 aaPredicted RBP3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 ADALQ6DHV7 355 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 LDHDQ86WU2 507 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 POTEDQ86YR6 584 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 FAM178BQ8IXR5 827 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 EFCAB13Q8IY85 973 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 ZNF280CQ8ND82 737 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 EHBP1Q8NDI1 1231 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 EDC3Q96F86 508 aaKnown RBP3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 TTC25Q96NG3 672 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 YME1L1Q96TA2 773 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 RMDN3Q96TC7 470 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 TSPYL1Q9H0U9 437 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 CCDC68Q9H2F9 335 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 IFT122Q9HBG6 1241 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 STARD7Q9NQZ5 370 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 TSHZ2Q9NRE2 1034 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 TMEM39AQ9NV64 488 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 PI4K2BG5E9Z4 385 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 H0YHG0 523 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 K7ENM7 598 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 HNRNPDLO14979 420 aaKnown RBP3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 SPTLC2O15270 562 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 HOXA2O43364 376 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 CIAO1O76071 339 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 MOCS3O95396 460 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 CYBBP04839 570 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 ATXN8OSP0DMR3 200 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 CPB1P15086 417 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 MARK3P27448 753 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 MAPK4P31152 587 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 ST8SIA6P61647 398 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 TSTA3Q13630 321 aaPredicted RBP3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 UBE3CQ15386 1083 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 DIXDC1Q155Q3 683 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 TKFCQ3LXA3 575 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 ARHGAP15Q53QZ3 475 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 PRR5LQ6MZQ0 368 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 NBPF10Q6P3W6 841 aaKnown RBP3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 USP50Q70EL3 339 aaPredicted RBP3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 MYOCDQ8IZQ8 938 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 ZNF713Q8N859 430 aaPredicted RBP3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 CCDC63Q8NA47 563 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 MARCH10Q8NA82 808 aaPredicted RBP3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 PI4K2BQ8TCG2 481 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 FAM149B1Q96BN6 582 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 NLRP4Q96MN2 994 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 TRERF1Q96PN7 1200 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 DDX23Q9BUQ8 820 aaKnown RBP3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 DEFB129Q9H1M3 183 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 MYOZ2Q9NPC6 264 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 EHD2Q9NZN4 543 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 USP25Q9UHP3 1055 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 MTUS1Q9ULD2 1270 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 G3BP2Q9UN86 482 aaKnown RBP3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 SHTN1A0MZ66 631 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 hCG_1984214I3L0E3 225 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 CYP27B1O15528 508 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 NEMFO60524 1076 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 GOLGA8HP0CJ92 632 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 TXNP10599 105 aaKnown RBP3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 ATP5JP18859 108 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 ARL4DP49703 201 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 EPHB1P54762 984 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 TNFAIP2Q03169 654 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 BMP2KLQ5H9B9 411 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 CREB3L3Q68CJ9 461 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 KCTD1Q719H9 257 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 SAMD7Q7Z3H4 446 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 SRGAP1Q7Z6B7 1085 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 PLEKHH3Q7Z736 793 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 SCN4BQ8IWT1 228 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 ENGASEQ8NFI3 743 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 SPDYE1Q8NFV5 336 aaPredicted RBP3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 GDAP1Q8TB36 358 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 SKA2Q8WVK7 121 aaPredicted RBP3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 MRPS27Q92552 414 aaKnown RBP3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 TBRG4Q969Z0 631 aaKnown RBP eCLIP3.23□□□□□ -1.891e-7■■■■■ 66.7
SMCHD1-203ENST00000577880 RAVER2Q9HCJ3 691 aaKnown RBP3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 C1orf112Q9NSG2 853 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 STRIP2Q9ULQ0 834 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 ZBTB12Q9Y330 459 aaPredicted RBP3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 COL4A3BPQ9Y5P4 624 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 MAST1Q9Y2H9 1570 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 ROBO1Q9Y6N7 1651 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 PSMD14O00487 310 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 MSCO60682 206 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 GMNNO75496 209 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 EIF3JO75822 258 aaKnown RBP3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 RPLP2P05387 115 aaKnown RBP3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 CYP19A1P11511 503 aaPredicted RBP3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 ERCC5P28715 1186 aaPredicted RBP3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 CPT1AP50416 773 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 SLC12A2P55011 1212 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 MYL7Q01449 175 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 PPP2R5DQ14738 602 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 TMEM132BQ14DG7 1078 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 CEP85Q6P2H3 762 aa3.23□□□□□ -1.89
SMCHD1-203ENST00000577880 COL23A1Q86Y22 540 aaPredicted RBP3.23□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms